Wall clock time and date at job start Tue Mar 31 2020 17:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47416 * 2 1 4 4 N 1.32158 * 120.53440 * 274.98315 * 3 2 1 5 5 C 1.31858 * 120.96968 * 179.97438 * 4 3 2 6 6 N 1.31887 * 122.09199 * 0.02562 * 5 4 3 7 7 C 1.32130 * 120.96786 * 359.97438 * 6 5 4 8 8 C 1.39922 * 120.53971 * 94.96060 * 3 2 1 9 9 C 1.47837 * 120.94107 * 0.04769 * 8 3 2 10 10 O 1.21554 * 120.00007 * 54.37870 * 9 8 3 11 11 N 1.34782 * 119.99834 * 234.38351 * 9 8 3 12 12 C 1.46925 * 120.63012 * 5.32121 * 11 9 8 13 13 C 1.53629 * 108.54338 * 126.36814 * 12 11 9 14 14 C 1.53044 * 109.23927 * 54.85245 * 13 12 11 15 15 C 1.53029 * 109.53945 * 298.51456 * 14 13 12 16 16 C 1.53005 * 109.52438 * 181.33411 * 15 14 13 17 17 O 1.42900 * 109.47107 * 180.14200 * 16 15 14 18 18 N 1.46503 * 109.49815 * 301.40938 * 15 14 13 19 19 C 1.36936 * 120.00181 * 179.83835 * 18 15 14 20 20 H 1.07996 * 120.00104 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99951 * 180.02562 * 19 18 15 22 22 N 1.31620 * 120.00108 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46973 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46961 * 120.00073 * 23 21 19 26 26 H 1.48498 * 109.47325 * 240.00057 * 23 21 19 27 27 C 1.46919 * 120.62727 * 185.60045 * 11 9 8 28 28 H 1.08997 * 109.47723 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46820 * 300.00427 * 1 2 3 30 30 H 1.08998 * 109.47271 * 59.99644 * 1 2 3 31 31 H 1.08993 * 109.47133 * 239.99565 * 2 1 3 32 32 H 1.09007 * 109.47047 * 120.00307 * 2 1 3 33 33 H 1.07992 * 118.95438 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.54156 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.58443 * 246.20071 * 12 11 9 36 36 H 1.08998 * 109.58843 * 6.62764 * 12 11 9 37 37 H 1.08998 * 109.62980 * 294.86367 * 13 12 11 38 38 H 1.09000 * 109.45668 * 174.73818 * 13 12 11 39 39 H 1.09000 * 109.45412 * 178.48724 * 14 13 12 40 40 H 1.09002 * 109.45612 * 58.53581 * 14 13 12 41 41 H 1.09000 * 109.47102 * 300.14233 * 16 15 14 42 42 H 1.09007 * 109.46759 * 60.14105 * 16 15 14 43 43 H 0.96699 * 113.99474 * 180.02562 * 17 16 15 44 44 H 0.97007 * 119.99714 * 359.84479 * 18 15 14 45 45 H 0.96998 * 120.00278 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.59148 * 353.36922 * 27 11 9 47 47 H 1.09000 * 109.58829 * 113.80108 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1630 2.0868 -1.1340 5 6 2.6013 3.3303 -1.1439 6 7 2.9288 3.9667 -0.0362 7 6 2.8290 3.3766 1.1418 8 6 2.3677 2.0564 1.2006 9 6 2.2392 1.3531 2.4946 10 8 2.7871 0.2808 2.6606 11 7 1.5145 1.9009 3.4903 12 6 0.7518 3.1369 3.2685 13 6 -0.7067 2.8923 3.6844 14 6 -0.7410 2.3833 5.1273 15 6 0.0150 1.0560 5.2199 16 6 -0.0479 0.5308 6.6556 17 8 0.6612 -0.7069 6.7415 18 7 -0.5976 0.0801 4.3151 19 6 -0.0848 -1.1864 4.2252 20 1 0.7710 -1.4661 4.8216 21 6 -0.6650 -2.1109 3.3675 22 7 -1.7078 -1.7699 2.6403 23 14 0.0340 -3.8388 3.2454 24 1 1.1972 -3.9679 4.1597 25 1 -1.0091 -4.8231 3.6303 26 1 0.4695 -4.0992 1.8498 27 6 1.4772 1.2766 4.8198 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.6951 3.8441 -2.0892 34 1 3.0987 3.9044 2.0447 35 1 1.1762 3.9410 3.8696 36 1 0.7919 3.4066 2.2131 37 1 -1.1556 2.1490 3.0256 38 1 -1.2656 3.8255 3.6144 39 1 -1.7760 2.2341 5.4351 40 1 -0.2697 3.1162 5.7822 41 1 0.4070 1.2576 7.3286 42 1 -1.0885 0.3739 6.9398 43 1 0.6625 -1.0988 7.6255 44 1 -1.3665 0.3312 3.7796 45 1 -2.1130 -2.4158 2.0406 46 1 1.9960 0.3186 4.7884 47 1 1.9595 1.9321 5.5449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717260279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:29 Heat of formation + Delta-G solvation = -12.228930 kcal Electronic energy + Delta-G solvation = -31738.605187 eV Core-core repulsion = 27729.339829 eV Total energy + Delta-G solvation = -4009.265358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28707 -39.62640 -37.75366 -35.83375 -34.86315 -33.91215 -32.85330 -32.18109 -31.07465 -30.65401 -28.58211 -26.16880 -25.43562 -24.79684 -24.16106 -23.48599 -21.81658 -21.57133 -19.91519 -18.43471 -17.86335 -17.36905 -16.85909 -16.76797 -16.21601 -15.88940 -15.08395 -14.81677 -14.42924 -14.25987 -14.00061 -13.89731 -13.67644 -13.41085 -13.35335 -13.14709 -13.09963 -12.73112 -12.36851 -12.13241 -12.11313 -11.68552 -11.49663 -11.26256 -11.03788 -10.87713 -10.74643 -10.64827 -10.57883 -10.53780 -10.34621 -10.17584 -9.72033 -9.58628 -9.48828 -9.28056 -9.19978 -9.00201 -8.81590 -8.12980 -6.81191 -5.56345 -2.81936 0.66302 1.04458 2.96592 3.34823 3.56520 3.64043 3.68437 3.77352 4.04659 4.11104 4.41838 4.62235 4.73111 4.78643 5.02600 5.03353 5.15660 5.26043 5.38924 5.39748 5.53491 5.59051 5.62853 5.73239 5.80003 5.83324 5.86382 5.87160 5.98404 6.05192 6.08526 6.13825 6.21951 6.31399 6.33611 6.55598 6.59392 6.65594 6.73817 6.81680 6.95186 7.01042 7.02868 7.79207 8.03192 8.16822 8.34625 8.57331 8.60154 9.74776 10.21059 10.57466 11.66242 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.006076 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.235814 B = 4607.520966 C = 6009.028521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C 0.235 3.765 4 N -0.520 5.520 5 C 0.301 3.699 6 N -0.530 5.530 7 C 0.174 3.826 8 C -0.223 4.223 9 C 0.574 3.426 10 O -0.511 6.511 11 N -0.584 5.584 12 C 0.108 3.892 13 C -0.130 4.130 14 C -0.115 4.115 15 C 0.189 3.811 16 C 0.076 3.924 17 O -0.540 6.540 18 N -0.701 5.701 19 C -0.197 4.197 20 H 0.091 0.909 21 C -0.017 4.017 22 N -0.939 5.939 23 Si 0.894 3.106 24 H -0.282 1.282 25 H -0.300 1.300 26 H -0.297 1.297 27 C 0.111 3.889 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.197 0.803 34 H 0.169 0.831 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.023 0.977 42 H 0.040 0.960 43 H 0.354 0.646 44 H 0.381 0.619 45 H 0.247 0.753 46 H 0.106 0.894 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 13.837 1.337 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.131 4.131 3 C 0.089 3.911 4 N -0.234 5.234 5 C 0.014 3.986 6 N -0.244 5.244 7 C 0.008 3.992 8 C -0.231 4.231 9 C 0.359 3.641 10 O -0.386 6.386 11 N -0.316 5.316 12 C -0.015 4.015 13 C -0.168 4.168 14 C -0.153 4.153 15 C 0.095 3.905 16 C -0.005 4.005 17 O -0.342 6.342 18 N -0.342 5.342 19 C -0.328 4.328 20 H 0.108 0.892 21 C -0.211 4.211 22 N -0.590 5.590 23 Si 0.728 3.272 24 H -0.207 1.207 25 H -0.228 1.228 26 H -0.224 1.224 27 C -0.013 4.013 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.213 0.787 34 H 0.186 0.814 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.199 0.801 44 H 0.216 0.784 45 H 0.057 0.943 46 H 0.125 0.875 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.988 13.677 -0.092 14.558 hybrid contribution -0.210 -1.262 1.045 1.652 sum 4.778 12.415 0.954 13.337 Atomic orbital electron populations 1.21498 0.91666 1.03768 1.01296 1.20906 0.98327 0.88509 1.05335 1.22040 0.86086 0.96671 0.86298 1.68361 1.15547 1.09595 1.29882 1.25082 0.88836 0.87686 0.96996 1.68400 1.18291 1.38668 0.99055 1.23352 0.89637 0.89748 0.96474 1.21760 1.06896 0.97388 0.97020 1.17598 0.79617 0.84563 0.82331 1.90800 1.47297 1.19714 1.80770 1.47666 1.46597 1.25541 1.11798 1.21819 0.92372 0.86427 1.00906 1.21920 0.95600 1.01531 0.97791 1.21620 1.00931 0.96361 0.96398 1.19931 0.91755 0.89135 0.89665 1.22748 0.94791 0.85348 0.97604 1.86880 1.76584 1.37646 1.33130 1.42415 1.35442 1.09037 1.47264 1.19525 1.09770 0.86698 1.16764 0.89174 1.24568 0.98584 0.97669 1.00266 1.69658 1.24596 1.33954 1.30816 0.86264 0.77951 0.85886 0.77131 1.20689 1.22779 1.22426 1.22185 0.99403 0.99078 0.80659 0.90805 0.91564 0.93910 0.90064 0.87226 0.78668 0.81385 0.91668 0.91017 0.90031 0.91439 0.91424 0.91957 0.95907 0.94207 0.80142 0.78383 0.94309 0.87533 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.89 37.16 0.37 -2.03 16 2 C -0.09 -1.73 6.00 -27.88 -0.17 -1.90 16 3 C 0.24 4.02 6.12 -81.82 -0.50 3.51 16 4 N -0.52 -8.03 10.36 -10.48 -0.11 -8.14 16 5 C 0.30 3.87 12.27 -92.02 -1.13 2.74 16 6 N -0.53 -6.98 10.42 -14.24 -0.15 -7.13 16 7 C 0.17 2.32 9.12 -16.77 -0.15 2.17 16 8 C -0.22 -3.63 4.61 -104.69 -0.48 -4.11 16 9 C 0.57 10.70 6.61 -12.33 -0.08 10.62 16 10 O -0.51 -11.59 14.64 5.32 0.08 -11.51 16 11 N -0.58 -9.63 2.88 -173.62 -0.50 -10.13 16 12 C 0.11 1.40 5.69 -3.48 -0.02 1.38 16 13 C -0.13 -1.75 5.93 -26.38 -0.16 -1.91 16 14 C -0.12 -1.59 4.76 -26.69 -0.13 -1.71 16 15 C 0.19 3.30 0.68 -131.70 -0.09 3.21 16 16 C 0.08 1.24 6.08 37.16 0.23 1.47 16 17 O -0.54 -9.80 10.11 -35.23 -0.36 -10.16 16 18 N -0.70 -15.73 4.75 -47.12 -0.22 -15.95 16 19 C -0.20 -5.15 8.21 -15.06 -0.12 -5.27 16 20 H 0.09 2.49 5.28 -52.49 -0.28 2.21 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 22 N -0.94 -26.70 13.06 55.49 0.72 -25.97 16 23 Si 0.89 23.26 29.55 -169.99 -5.02 18.23 16 24 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 C 0.11 1.95 4.86 -3.71 -0.02 1.93 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.11 2.38 5.72 -51.92 -0.30 2.08 16 33 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.17 1.78 7.83 -52.48 -0.41 1.37 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.92 5.38 -51.93 -0.28 0.64 16 37 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.35 4.72 9.12 45.56 0.42 5.13 16 44 H 0.38 9.24 6.43 -40.82 -0.26 8.97 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.11 2.33 5.68 -51.93 -0.30 2.04 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -32.37 371.54 -8.48 -40.84 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.97 Total: 14.79 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -2.55 Total: 9.54 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.26 Total: -67.33 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.28 Total: -21.67 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.37 -8.48 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717260279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.615 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds