Wall clock time and date at job start Tue Mar 31 2020 17:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47416 * 2 1 4 4 N 1.32158 * 120.53440 * 274.98315 * 3 2 1 5 5 C 1.31858 * 120.96968 * 179.97438 * 4 3 2 6 6 N 1.31887 * 122.09199 * 0.02562 * 5 4 3 7 7 C 1.32130 * 120.96786 * 359.97438 * 6 5 4 8 8 C 1.39922 * 120.53971 * 94.96060 * 3 2 1 9 9 C 1.47837 * 120.94107 * 0.04769 * 8 3 2 10 10 O 1.21554 * 120.00007 * 54.37870 * 9 8 3 11 11 N 1.34782 * 119.99834 * 234.38351 * 9 8 3 12 12 C 1.46925 * 120.63012 * 5.32121 * 11 9 8 13 13 C 1.53629 * 108.54338 * 126.36814 * 12 11 9 14 14 C 1.53044 * 109.23927 * 54.85245 * 13 12 11 15 15 C 1.53029 * 109.53945 * 298.51456 * 14 13 12 16 16 C 1.53005 * 109.52438 * 181.33411 * 15 14 13 17 17 O 1.42900 * 109.47107 * 180.14200 * 16 15 14 18 18 N 1.46503 * 109.49815 * 301.40938 * 15 14 13 19 19 C 1.36936 * 120.00181 * 179.83835 * 18 15 14 20 20 H 1.07996 * 120.00104 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99951 * 180.02562 * 19 18 15 22 22 N 1.31620 * 120.00108 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46973 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46961 * 120.00073 * 23 21 19 26 26 H 1.48498 * 109.47325 * 240.00057 * 23 21 19 27 27 C 1.46919 * 120.62727 * 185.60045 * 11 9 8 28 28 H 1.08997 * 109.47723 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46820 * 300.00427 * 1 2 3 30 30 H 1.08998 * 109.47271 * 59.99644 * 1 2 3 31 31 H 1.08993 * 109.47133 * 239.99565 * 2 1 3 32 32 H 1.09007 * 109.47047 * 120.00307 * 2 1 3 33 33 H 1.07992 * 118.95438 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.54156 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.58443 * 246.20071 * 12 11 9 36 36 H 1.08998 * 109.58843 * 6.62764 * 12 11 9 37 37 H 1.08998 * 109.62980 * 294.86367 * 13 12 11 38 38 H 1.09000 * 109.45668 * 174.73818 * 13 12 11 39 39 H 1.09000 * 109.45412 * 178.48724 * 14 13 12 40 40 H 1.09002 * 109.45612 * 58.53581 * 14 13 12 41 41 H 1.09000 * 109.47102 * 300.14233 * 16 15 14 42 42 H 1.09007 * 109.46759 * 60.14105 * 16 15 14 43 43 H 0.96699 * 113.99474 * 180.02562 * 17 16 15 44 44 H 0.97007 * 119.99714 * 359.84479 * 18 15 14 45 45 H 0.96998 * 120.00278 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.59148 * 353.36922 * 27 11 9 47 47 H 1.09000 * 109.58829 * 113.80108 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1630 2.0868 -1.1340 5 6 2.6013 3.3303 -1.1439 6 7 2.9288 3.9667 -0.0362 7 6 2.8290 3.3766 1.1418 8 6 2.3677 2.0564 1.2006 9 6 2.2392 1.3531 2.4946 10 8 2.7871 0.2808 2.6606 11 7 1.5145 1.9009 3.4903 12 6 0.7518 3.1369 3.2685 13 6 -0.7067 2.8923 3.6844 14 6 -0.7410 2.3833 5.1273 15 6 0.0150 1.0560 5.2199 16 6 -0.0479 0.5308 6.6556 17 8 0.6612 -0.7069 6.7415 18 7 -0.5976 0.0801 4.3151 19 6 -0.0848 -1.1864 4.2252 20 1 0.7710 -1.4661 4.8216 21 6 -0.6650 -2.1109 3.3675 22 7 -1.7078 -1.7699 2.6403 23 14 0.0340 -3.8388 3.2454 24 1 1.1972 -3.9679 4.1597 25 1 -1.0091 -4.8231 3.6303 26 1 0.4695 -4.0992 1.8498 27 6 1.4772 1.2766 4.8198 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.6951 3.8441 -2.0892 34 1 3.0987 3.9044 2.0447 35 1 1.1762 3.9410 3.8696 36 1 0.7919 3.4066 2.2131 37 1 -1.1556 2.1490 3.0256 38 1 -1.2656 3.8255 3.6144 39 1 -1.7760 2.2341 5.4351 40 1 -0.2697 3.1162 5.7822 41 1 0.4070 1.2576 7.3286 42 1 -1.0885 0.3739 6.9398 43 1 0.6625 -1.0988 7.6255 44 1 -1.3665 0.3312 3.7796 45 1 -2.1130 -2.4158 2.0406 46 1 1.9960 0.3186 4.7884 47 1 1.9595 1.9321 5.5449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717260279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:28 Heat of formation + Delta-G solvation = -36.577819 kcal Electronic energy + Delta-G solvation = -31739.661034 eV Core-core repulsion = 27729.339829 eV Total energy + Delta-G solvation = -4010.321205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.47405 -40.92871 -39.17677 -37.17308 -36.15855 -35.52030 -34.29196 -33.61004 -32.49794 -32.02616 -30.31179 -27.47556 -26.62497 -26.09552 -25.54614 -25.28495 -23.06749 -22.88812 -21.24529 -19.82153 -19.18762 -18.97952 -18.15930 -17.89905 -17.73697 -17.27563 -16.60088 -16.09157 -15.89594 -15.68572 -15.62594 -15.22988 -15.00621 -14.89761 -14.76565 -14.44146 -14.40606 -14.20317 -13.70134 -13.55314 -13.52382 -13.18847 -12.90967 -12.74969 -12.67933 -12.61314 -12.51573 -12.11787 -12.02015 -11.98560 -11.79548 -11.58289 -11.33271 -11.27424 -10.91523 -10.74832 -10.54123 -10.49946 -10.37514 -9.51721 -8.71020 -7.70768 -4.90389 -0.47563 -0.12037 1.41115 1.46245 1.52909 1.59875 2.09844 2.62576 2.69234 2.89580 3.09241 3.26065 3.39809 3.49116 3.74834 3.80272 3.93075 3.95647 4.09833 4.15236 4.17905 4.27262 4.29587 4.35342 4.49288 4.54399 4.61430 4.65196 4.66690 4.78641 4.85946 4.94349 4.97040 5.03173 5.06506 5.08596 5.20749 5.23323 5.34505 5.48246 5.52667 5.70385 5.77775 6.01708 6.47219 6.52860 6.92128 7.19132 7.21800 7.62478 8.29814 8.53587 9.51978 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.006076 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.235814 B = 4607.520966 C = 6009.028521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.087 4.087 3 C 0.221 3.779 4 N -0.532 5.532 5 C 0.309 3.691 6 N -0.524 5.524 7 C 0.195 3.805 8 C -0.239 4.239 9 C 0.568 3.432 10 O -0.567 6.567 11 N -0.581 5.581 12 C 0.105 3.895 13 C -0.127 4.127 14 C -0.108 4.108 15 C 0.175 3.825 16 C 0.076 3.924 17 O -0.573 6.573 18 N -0.707 5.707 19 C -0.162 4.162 20 H 0.077 0.923 21 C -0.072 4.072 22 N -0.960 5.960 23 Si 0.927 3.073 24 H -0.285 1.285 25 H -0.302 1.302 26 H -0.309 1.309 27 C 0.116 3.884 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.239 0.761 34 H 0.203 0.797 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.375 0.625 44 H 0.371 0.629 45 H 0.237 0.763 46 H 0.056 0.944 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 18.361 2.164 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C 0.075 3.925 4 N -0.246 5.246 5 C 0.022 3.978 6 N -0.238 5.238 7 C 0.028 3.972 8 C -0.246 4.246 9 C 0.354 3.646 10 O -0.447 6.447 11 N -0.312 5.312 12 C -0.017 4.017 13 C -0.166 4.166 14 C -0.145 4.145 15 C 0.083 3.917 16 C -0.004 4.004 17 O -0.379 6.379 18 N -0.346 5.346 19 C -0.294 4.294 20 H 0.094 0.906 21 C -0.262 4.262 22 N -0.614 5.614 23 Si 0.762 3.238 24 H -0.211 1.211 25 H -0.230 1.230 26 H -0.238 1.238 27 C -0.009 4.009 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.254 0.746 34 H 0.219 0.781 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.222 0.778 44 H 0.204 0.796 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.702 18.255 0.790 19.141 hybrid contribution -0.352 -2.527 0.859 2.692 sum 5.350 15.728 1.649 16.694 Atomic orbital electron populations 1.21250 0.92417 1.01794 1.00805 1.20657 0.97550 0.90397 1.03909 1.21697 0.87358 0.95891 0.87546 1.68366 1.16473 1.10843 1.28960 1.25945 0.86615 0.86663 0.98538 1.68566 1.17997 1.38190 0.99011 1.23807 0.87403 0.88227 0.97801 1.21596 1.08913 0.98776 0.95351 1.18019 0.79189 0.84027 0.83355 1.90769 1.49842 1.22248 1.81828 1.47806 1.46021 1.26385 1.10956 1.22151 0.91718 0.85685 1.02123 1.21896 0.96129 1.01920 0.96610 1.21623 1.00674 0.94788 0.97464 1.20415 0.91915 0.90089 0.89234 1.22722 0.94791 0.85687 0.97200 1.86800 1.76899 1.38935 1.35289 1.42499 1.35165 1.08798 1.48119 1.19516 1.07697 0.88031 1.14200 0.90551 1.24924 0.99961 0.99457 1.01905 1.69732 1.25839 1.33751 1.32083 0.85700 0.77226 0.84708 0.76124 1.21057 1.23046 1.23804 1.22026 0.98822 0.97912 0.82102 0.93495 0.94270 0.91800 0.89104 0.90992 0.74556 0.78071 0.86982 0.90827 0.94436 0.87762 0.91538 0.87684 0.91491 0.94804 0.77807 0.79621 0.95398 0.92509 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.28 9.89 71.98 0.71 -3.57 16 2 C -0.09 -3.43 6.00 29.85 0.18 -3.25 16 3 C 0.22 7.54 6.12 42.92 0.26 7.81 16 4 N -0.53 -15.56 10.36 -187.07 -1.94 -17.50 16 5 C 0.31 6.86 12.27 180.84 2.22 9.08 16 6 N -0.52 -11.74 10.42 -198.97 -2.07 -13.82 16 7 C 0.19 4.55 9.12 85.07 0.78 5.33 16 8 C -0.24 -7.57 4.61 -19.91 -0.09 -7.67 16 9 C 0.57 21.41 6.61 86.78 0.57 21.99 16 10 O -0.57 -27.25 14.64 -3.89 -0.06 -27.31 16 11 N -0.58 -18.36 2.88 -821.49 -2.37 -20.73 16 12 C 0.10 2.32 5.69 86.51 0.49 2.81 16 13 C -0.13 -3.03 5.93 30.82 0.18 -2.85 16 14 C -0.11 -2.57 4.76 30.62 0.15 -2.43 16 15 C 0.17 5.84 0.68 3.68 0.00 5.84 16 16 C 0.08 2.31 6.08 71.98 0.44 2.74 16 17 O -0.57 -20.54 10.11 -148.98 -1.51 -22.05 16 18 N -0.71 -32.38 4.75 -302.99 -1.44 -33.81 16 19 C -0.16 -8.81 8.21 84.03 0.69 -8.12 16 20 H 0.08 4.40 5.28 -2.91 -0.02 4.39 16 21 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 22 N -0.96 -57.46 13.06 21.65 0.28 -57.18 16 23 Si 0.93 50.28 29.55 68.60 2.03 52.31 16 24 H -0.28 -15.37 7.11 99.48 0.71 -14.66 16 25 H -0.30 -16.27 7.11 99.48 0.71 -15.57 16 26 H -0.31 -17.19 7.11 99.48 0.71 -16.48 16 27 C 0.12 3.90 4.86 86.36 0.42 4.32 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.07 3.41 5.72 -2.38 -0.01 3.39 16 33 H 0.24 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.20 3.27 7.83 -2.91 -0.02 3.24 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.63 5.38 -2.39 -0.01 1.62 16 37 H 0.04 1.24 6.75 -2.39 -0.02 1.23 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.37 9.66 9.12 -74.06 -0.68 8.99 16 44 H 0.37 18.55 6.43 -92.70 -0.60 17.95 16 45 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.06 2.54 5.68 -2.39 -0.01 2.52 16 47 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -78.10 371.54 0.14 -77.96 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.25 Total: 33.82 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 7.47 Total: 28.31 kcal Atomic # 7 Polarization: -135.50 SS G_CDS: -7.54 Total: -143.04 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.56 Total: -49.35 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.03 Total: 52.31 kcal Total: -78.10 0.14 -77.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717260279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.378 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds