Wall clock time and date at job start Tue Mar 31 2020 18:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 C 1.50699 * 109.47095 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00103 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99798 * 180.02562 * 4 3 2 7 7 C 1.46958 * 120.65131 * 5.90799 * 6 4 3 8 8 C 1.53192 * 108.88792 * 233.53410 * 7 6 4 9 9 C 1.53042 * 109.31455 * 305.44723 * 8 7 6 10 10 C 1.53042 * 109.53672 * 61.36253 * 9 8 7 11 11 C 1.46924 * 120.62910 * 186.09539 * 6 4 3 12 12 H 1.09000 * 109.58452 * 246.31873 * 11 6 4 13 13 C 1.50700 * 109.58656 * 6.59951 * 11 6 4 14 14 O 1.21308 * 119.99962 * 61.41394 * 13 11 6 15 15 N 1.34778 * 120.00194 * 241.41166 * 13 11 6 16 16 C 1.40592 * 119.99957 * 180.02562 * 15 13 11 17 17 C 1.40646 * 126.08588 * 359.97438 * 16 15 13 18 18 N 1.30900 * 108.39114 * 179.97438 * 17 16 15 19 19 N 1.40068 * 108.40821 * 0.02562 * 18 17 16 20 20 C 1.37324 * 126.07242 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99521 * 180.02562 * 20 19 18 22 22 C 1.38984 * 119.99906 * 0.02562 * 20 19 18 23 23 N 1.31297 * 120.00092 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99699 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47043 * 269.99998 * 24 22 20 26 26 H 1.48496 * 109.47437 * 30.00492 * 24 22 20 27 27 H 1.48499 * 109.46865 * 150.00681 * 24 22 20 28 28 C 1.35687 * 126.08055 * 180.28605 * 16 15 13 29 29 H 1.08993 * 109.47472 * 59.99783 * 1 2 3 30 30 H 1.09007 * 109.47306 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47115 * 299.99596 * 1 2 3 32 32 H 1.09001 * 109.47179 * 239.99624 * 2 1 3 33 33 H 1.09002 * 109.47389 * 120.00001 * 2 1 3 34 34 H 1.08996 * 109.46967 * 59.99851 * 3 2 1 35 35 H 1.09002 * 109.46997 * 300.00241 * 3 2 1 36 36 H 1.09009 * 109.46429 * 113.75414 * 7 6 4 37 37 H 1.09000 * 109.72023 * 353.47245 * 7 6 4 38 38 H 1.08999 * 109.49842 * 185.49706 * 8 7 6 39 39 H 1.09004 * 109.49517 * 65.40071 * 8 7 6 40 40 H 1.08997 * 109.46135 * 301.34698 * 9 8 7 41 41 H 1.08998 * 109.45640 * 181.37932 * 9 8 7 42 42 H 1.08996 * 109.49947 * 178.67991 * 10 9 8 43 43 H 1.09004 * 109.49819 * 58.58739 * 10 9 8 44 44 H 0.97000 * 119.99614 * 0.02562 * 15 13 11 45 45 H 1.08003 * 125.80459 * 359.97438 * 17 16 15 46 46 H 0.96994 * 120.00164 * 179.97438 * 23 22 20 47 47 H 1.07997 * 126.24206 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6098 -0.0002 7 6 3.5064 3.8873 0.1310 8 6 3.9097 4.8025 -1.0294 9 6 5.4340 4.9352 -1.0631 10 6 6.0627 3.5589 -1.2924 11 6 5.6837 2.6296 -0.1351 12 1 6.1309 2.9959 0.7890 13 6 6.1837 1.2369 -0.4208 14 8 5.8274 0.6590 -1.4261 15 7 7.0266 0.6335 0.4405 16 6 7.4934 -0.6655 0.1736 17 6 7.1651 -1.4498 -0.9467 18 7 7.7907 -2.5953 -0.8467 19 7 8.5399 -2.5881 0.3368 20 6 9.3343 -3.6093 0.7971 21 1 9.8711 -3.4984 1.7277 22 6 9.4475 -4.7855 0.0654 23 7 8.7953 -4.9201 -1.0662 24 14 10.5276 -6.1749 0.6919 25 1 11.9057 -6.0067 0.1648 26 1 10.5585 -6.1471 2.1763 27 1 9.9773 -7.4753 0.2324 28 6 8.3362 -1.3878 0.9540 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.7739 4.3576 1.0773 37 1 2.4310 3.7120 0.1014 38 1 3.4619 5.7863 -0.8894 39 1 3.5610 4.3738 -1.9690 40 1 5.7843 5.3408 -0.1140 41 1 5.7222 5.6055 -1.8728 42 1 7.1471 3.6575 -1.3397 43 1 5.6937 3.1419 -2.2295 44 1 7.3112 1.0956 1.2445 45 1 6.5084 -1.1569 -1.7526 46 1 8.8746 -5.7408 -1.5770 47 1 8.7695 -1.0697 1.8907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049993987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:59 Heat of formation + Delta-G solvation = 13.389048 kcal Electronic energy + Delta-G solvation = -29734.165479 eV Core-core repulsion = 25726.010999 eV Total energy + Delta-G solvation = -4008.154479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.82378 -39.39576 -37.95800 -37.33331 -34.41000 -33.90377 -32.99902 -32.94727 -31.56483 -30.01805 -28.19464 -27.62380 -25.64115 -24.68384 -23.75131 -22.26227 -20.97763 -20.67929 -20.30319 -19.19460 -18.75446 -17.55547 -16.97929 -16.16696 -16.12497 -15.63860 -15.29721 -15.03424 -14.69768 -14.59977 -14.17634 -13.95786 -13.87212 -13.81142 -13.40372 -13.12152 -12.99207 -12.84087 -12.68008 -12.49259 -11.98087 -11.78367 -11.64363 -11.55475 -11.32562 -11.21020 -11.17455 -11.15058 -11.05191 -10.87397 -10.77563 -10.75243 -10.44641 -9.95305 -9.29044 -8.97660 -8.85525 -8.62116 -8.58197 -7.85143 -6.46258 -6.41102 -4.05927 2.63942 2.81780 3.04466 3.12584 3.17554 3.44236 3.72663 3.90878 3.97964 4.45591 4.51565 4.61650 4.67451 4.74317 4.82857 4.89031 4.93749 4.96806 5.01921 5.16505 5.18449 5.22730 5.34583 5.39962 5.42533 5.49968 5.51417 5.60865 5.64578 5.70046 5.80780 5.86146 5.98859 6.13949 6.16198 6.33496 6.41355 6.43663 6.67275 7.07949 7.20346 7.34659 7.37361 7.48940 8.02894 8.33998 8.42392 8.52495 8.84156 9.19415 9.56817 9.87710 10.55248 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.003041 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.063962 B = 9205.944501 C =10499.887254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.131 4.131 4 C 0.498 3.502 5 O -0.478 6.478 6 N -0.611 5.611 7 C 0.112 3.888 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.133 3.867 12 H 0.080 0.920 13 C 0.523 3.477 14 O -0.521 6.521 15 N -0.626 5.626 16 C -0.041 4.041 17 C -0.027 4.027 18 N -0.262 5.262 19 N -0.148 5.148 20 C -0.324 4.324 21 H 0.113 0.887 22 C 0.046 3.954 23 N -0.773 5.773 24 Si 0.932 3.068 25 H -0.272 1.272 26 H -0.265 1.265 27 H -0.277 1.277 28 C -0.089 4.089 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.390 0.610 45 H 0.174 0.826 46 H 0.272 0.728 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 20.630 4.181 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.285 3.715 5 O -0.350 6.350 6 N -0.349 5.349 7 C -0.011 4.011 8 C -0.176 4.176 9 C -0.155 4.155 10 C -0.161 4.161 11 C 0.026 3.974 12 H 0.098 0.902 13 C 0.308 3.692 14 O -0.396 6.396 15 N -0.268 5.268 16 C -0.147 4.147 17 C -0.203 4.203 18 N -0.093 5.093 19 N 0.084 4.916 20 C -0.456 4.456 21 H 0.131 0.869 22 C -0.171 4.171 23 N -0.400 5.400 24 Si 0.757 3.243 25 H -0.197 1.197 26 H -0.189 1.189 27 H -0.202 1.202 28 C -0.239 4.239 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.222 0.778 45 H 0.191 0.809 46 H 0.083 0.917 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.736 18.282 2.720 21.894 hybrid contribution 0.470 0.695 1.253 1.508 sum -11.265 18.977 3.973 22.424 Atomic orbital electron populations 1.21777 0.95680 1.01938 1.01349 1.21307 0.94952 0.94674 1.04121 1.21677 0.91774 1.00144 1.03528 1.20891 0.90464 0.83394 0.76714 1.90931 1.68106 1.30262 1.45666 1.48014 1.05393 1.06393 1.75106 1.21719 0.97085 0.83799 0.98532 1.21949 0.96732 0.99621 0.99280 1.21505 0.95010 0.96685 1.02250 1.21820 1.01331 0.94386 0.98560 1.21068 0.81529 0.95370 0.99399 0.90248 1.19455 0.79080 0.86271 0.84358 1.90569 1.56471 1.64260 1.28348 1.42341 1.46377 1.14523 1.23588 1.17196 1.09187 0.87522 1.00793 1.24035 1.04183 0.92236 0.99807 1.78213 1.10885 1.18653 1.01572 1.44478 1.26439 1.08283 1.12436 1.19798 1.24892 0.92890 1.08006 0.86897 1.25606 0.97222 0.98940 0.95302 1.70232 1.33406 1.25712 1.10651 0.85868 0.79522 0.79557 0.79387 1.19715 1.18929 1.20198 1.21219 1.10236 0.90594 1.01891 0.92856 0.92400 0.92951 0.90850 0.91176 0.89461 0.89282 0.91359 0.89502 0.90681 0.91190 0.91664 0.91271 0.90376 0.90119 0.77798 0.80935 0.91695 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.11 -1.37 5.22 -26.73 -0.14 -1.51 16 3 C -0.13 -1.38 4.06 -27.88 -0.11 -1.50 16 4 C 0.50 7.43 7.39 -10.98 -0.08 7.35 16 5 O -0.48 -9.91 11.75 -19.10 -0.22 -10.14 16 6 N -0.61 -7.36 2.98 -166.51 -0.50 -7.86 16 7 C 0.11 0.81 6.34 -3.69 -0.02 0.79 16 8 C -0.14 -0.91 6.08 -26.61 -0.16 -1.07 16 9 C -0.12 -0.87 5.88 -26.69 -0.16 -1.03 16 10 C -0.12 -1.36 5.32 -26.61 -0.14 -1.50 16 11 C 0.13 1.76 3.31 -68.76 -0.23 1.53 16 12 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 13 C 0.52 10.02 4.34 -10.98 -0.05 9.97 16 14 O -0.52 -12.21 11.76 -19.13 -0.23 -12.44 16 15 N -0.63 -12.44 5.47 -10.00 -0.05 -12.50 16 16 C -0.04 -1.05 6.90 -83.84 -0.58 -1.63 16 17 C -0.03 -0.77 10.85 -17.04 -0.18 -0.96 16 18 N -0.26 -8.16 10.40 30.80 0.32 -7.84 16 19 N -0.15 -4.33 3.74 -11.41 -0.04 -4.38 16 20 C -0.32 -9.08 10.25 -14.81 -0.15 -9.24 16 21 H 0.11 2.84 7.83 -52.48 -0.41 2.43 16 22 C 0.05 1.24 5.50 -17.50 -0.10 1.15 16 23 N -0.77 -22.77 11.81 55.49 0.66 -22.11 16 24 Si 0.93 19.92 29.55 -169.99 -5.02 14.90 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 27 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 28 C -0.09 -2.26 11.49 -16.39 -0.19 -2.45 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 33 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 35 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 36 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.09 0.48 5.95 -51.93 -0.31 0.18 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 44 H 0.39 6.16 8.67 -40.82 -0.35 5.81 16 45 H 0.17 5.04 5.92 -52.48 -0.31 4.73 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.14 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -38.67 377.33 -8.55 -47.22 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.22 Total: 10.52 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.92 Total: -1.07 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.38 Total: -54.68 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.45 Total: -22.58 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.67 -8.55 -47.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.611 kcal (2) G-P(sol) polarization free energy of solvation -38.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds