Wall clock time and date at job start Tue Mar 31 2020 18:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47311 * 2 1 4 4 C 1.50697 * 109.47058 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00252 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99772 * 179.97438 * 4 3 2 7 7 C 1.46918 * 120.63227 * 3.62782 * 6 4 3 8 8 C 1.53192 * 108.77529 * 126.39453 * 7 6 4 9 9 C 1.53034 * 109.31520 * 54.63219 * 8 7 6 10 10 C 1.53033 * 109.54037 * 298.63816 * 9 8 7 11 11 C 1.46930 * 120.62954 * 183.63187 * 6 4 3 12 12 H 1.09003 * 109.70662 * 113.74554 * 11 6 4 13 13 C 1.50702 * 109.58478 * 353.39279 * 11 6 4 14 14 O 1.21301 * 120.00290 * 294.67159 * 13 11 6 15 15 N 1.34778 * 119.99905 * 114.67305 * 13 11 6 16 16 C 1.40592 * 120.00162 * 179.97438 * 15 13 11 17 17 C 1.40649 * 126.08169 * 0.02600 * 16 15 13 18 18 N 1.30911 * 108.38644 * 179.69662 * 17 16 15 19 19 N 1.40063 * 108.40592 * 0.44075 * 18 17 16 20 20 C 1.37330 * 126.06839 * 179.81643 * 19 18 17 21 21 H 1.08000 * 119.99747 * 179.68657 * 20 19 18 22 22 C 1.38987 * 119.99855 * 359.69442 * 20 19 18 23 23 N 1.31292 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.46760 * 299.99230 * 24 22 20 27 27 H 1.48499 * 109.47437 * 59.99318 * 24 22 20 28 28 C 1.35684 * 126.08522 * 179.97438 * 16 15 13 29 29 H 1.09005 * 109.47586 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47516 * 300.00132 * 1 2 3 31 31 H 1.08998 * 109.47004 * 59.99967 * 1 2 3 32 32 H 1.08994 * 109.47170 * 239.99144 * 2 1 3 33 33 H 1.09006 * 109.46930 * 119.99708 * 2 1 3 34 34 H 1.08999 * 109.47161 * 59.99945 * 3 2 1 35 35 H 1.08993 * 109.46678 * 299.99875 * 3 2 1 36 36 H 1.09001 * 109.58912 * 6.60370 * 7 6 4 37 37 H 1.09001 * 109.70627 * 246.24545 * 7 6 4 38 38 H 1.08998 * 109.49396 * 294.68378 * 8 7 6 39 39 H 1.08999 * 109.52245 * 174.60804 * 8 7 6 40 40 H 1.08996 * 109.46104 * 178.61080 * 9 8 7 41 41 H 1.09003 * 109.45637 * 58.66166 * 9 8 7 42 42 H 1.08995 * 109.50341 * 301.41211 * 10 9 8 43 43 H 1.09000 * 109.50182 * 181.30984 * 10 9 8 44 44 H 0.97010 * 119.99997 * 359.97438 * 15 13 11 45 45 H 1.08003 * 125.80721 * 0.02562 * 17 16 15 46 46 H 0.97003 * 120.00317 * 180.02562 * 23 22 20 47 47 H 1.08002 * 126.24160 * 0.04169 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5025 3.8888 0.0791 8 6 4.0742 4.7043 1.2432 9 6 5.5881 4.8434 1.0684 10 6 6.2350 3.4566 1.0866 11 6 5.6879 2.6270 -0.0793 12 1 5.9996 3.0735 -1.0235 13 6 6.2154 1.2183 0.0118 14 8 6.0682 0.5802 1.0329 15 7 6.8509 0.6673 -1.0414 16 6 7.3435 -0.6468 -0.9563 17 6 7.2445 -1.4980 0.1590 18 7 7.8120 -2.6390 -0.1407 19 7 8.3028 -2.5583 -1.4500 20 6 8.9670 -3.5515 -2.1271 21 1 9.2997 -3.3845 -3.1409 22 6 9.2109 -4.7716 -1.5076 23 7 8.8068 -4.9744 -0.2751 24 14 10.1150 -6.1222 -2.4283 25 1 10.2476 -7.3146 -1.5532 26 1 9.3512 -6.4860 -3.6489 27 1 11.4652 -5.6398 -2.8147 28 6 7.9983 -1.3198 -1.9358 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 2.4421 3.7025 0.2495 37 1 3.6316 4.4409 -0.8518 38 1 3.8618 4.1949 2.1831 39 1 3.6167 5.6936 1.2541 40 1 5.9940 5.4442 1.8823 41 1 5.8005 5.3307 0.1168 42 1 6.0023 2.9589 2.0280 43 1 7.3156 3.5578 0.9854 44 1 6.9684 1.1774 -1.8581 45 1 6.7749 -1.2538 1.1005 46 1 8.9773 -5.8258 0.1574 47 1 8.2356 -0.9437 -2.9200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049993988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:02 Heat of formation + Delta-G solvation = -12.343655 kcal Electronic energy + Delta-G solvation = -29748.308510 eV Core-core repulsion = 25739.038176 eV Total energy + Delta-G solvation = -4009.270333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.07052 -41.31132 -39.45386 -38.34548 -35.83286 -35.33655 -34.87588 -33.86402 -32.58982 -32.07609 -29.59710 -28.99629 -27.06027 -26.16148 -24.73498 -23.27113 -22.79914 -21.88415 -21.54133 -21.12752 -19.78762 -19.33273 -18.35560 -17.49519 -17.28966 -17.22685 -16.72562 -16.61589 -15.76516 -15.72270 -15.51893 -15.21118 -15.06303 -14.97369 -14.74356 -14.67906 -14.43347 -14.01135 -13.79323 -13.54194 -13.39366 -13.26378 -12.89785 -12.86567 -12.83029 -12.66411 -12.43263 -12.14450 -12.11855 -11.96158 -11.75393 -11.68984 -11.67676 -11.53359 -10.95637 -10.79875 -10.48203 -10.32804 -10.05952 -9.62448 -8.45490 -8.44503 -6.21936 1.25869 1.37458 1.52296 1.55097 1.70381 1.81086 2.08732 2.20316 2.36312 2.70757 2.93270 3.09904 3.58488 3.81143 3.88369 3.91788 3.96570 4.06291 4.11091 4.16980 4.26292 4.44322 4.47763 4.57401 4.64269 4.65882 4.68034 4.75079 4.85091 4.86156 4.91556 5.00713 5.09712 5.14198 5.17577 5.21597 5.22675 5.25161 5.31633 5.41387 5.48327 5.54744 5.61949 5.97858 6.37608 6.40772 6.76754 6.88875 7.27128 7.49527 7.64299 7.77227 8.54277 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.003060 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.185050 B = 9149.525683 C =10438.624413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.120 4.120 4 C 0.480 3.520 5 O -0.549 6.549 6 N -0.605 5.605 7 C 0.103 3.897 8 C -0.135 4.135 9 C -0.110 4.110 10 C -0.120 4.120 11 C 0.139 3.861 12 H 0.119 0.881 13 C 0.516 3.484 14 O -0.565 6.565 15 N -0.625 5.625 16 C -0.026 4.026 17 C -0.057 4.057 18 N -0.312 5.312 19 N -0.169 5.169 20 C -0.357 4.357 21 H 0.140 0.860 22 C -0.010 4.010 23 N -0.829 5.829 24 Si 1.023 2.977 25 H -0.278 1.278 26 H -0.253 1.253 27 H -0.251 1.251 28 C -0.091 4.091 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.411 0.589 45 H 0.155 0.845 46 H 0.275 0.725 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.476 24.464 -4.088 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.159 4.159 4 C 0.270 3.730 5 O -0.426 6.426 6 N -0.341 5.341 7 C -0.017 4.017 8 C -0.173 4.173 9 C -0.147 4.147 10 C -0.159 4.159 11 C 0.032 3.968 12 H 0.136 0.864 13 C 0.305 3.695 14 O -0.443 6.443 15 N -0.270 5.270 16 C -0.132 4.132 17 C -0.232 4.232 18 N -0.145 5.145 19 N 0.061 4.939 20 C -0.488 4.488 21 H 0.158 0.842 22 C -0.221 4.221 23 N -0.457 5.457 24 Si 0.841 3.159 25 H -0.202 1.202 26 H -0.177 1.177 27 H -0.175 1.175 28 C -0.241 4.241 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.247 0.753 45 H 0.172 0.828 46 H 0.085 0.915 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.006 22.165 -2.757 25.847 hybrid contribution 0.458 -0.217 -0.382 0.635 sum -12.548 21.948 -3.139 25.476 Atomic orbital electron populations 1.21717 0.92699 1.02197 1.03228 1.21260 0.97430 0.95643 1.00843 1.21711 0.88423 0.99218 1.06540 1.21835 0.92373 0.83233 0.75595 1.90967 1.69421 1.32924 1.49298 1.48227 1.04339 1.07558 1.74011 1.22177 0.97268 0.81836 1.00468 1.21968 0.95850 1.01634 0.97873 1.21513 0.95379 0.93751 1.04101 1.21828 1.00928 0.96943 0.96169 1.21140 0.82187 0.91225 1.02277 0.86363 1.20617 0.76999 0.88903 0.82992 1.90544 1.57383 1.63410 1.32962 1.42407 1.56669 1.11308 1.16661 1.17295 1.11582 0.88604 0.95692 1.23935 1.06368 0.92508 1.00408 1.78102 1.19886 1.20586 0.95904 1.44795 1.32347 1.08655 1.08127 1.20590 1.35932 0.92503 0.99755 0.84231 1.26956 0.97168 1.01441 0.96506 1.70431 1.37692 1.24635 1.12921 0.84615 0.78620 0.74982 0.77679 1.20246 1.17705 1.17481 1.21938 1.12506 0.88608 1.01010 0.93116 0.91124 0.90743 0.94136 0.94739 0.86520 0.85578 0.87253 0.88248 0.93155 0.87168 0.90288 0.89170 0.93711 0.90324 0.75274 0.82818 0.91521 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.62 16 2 C -0.11 -2.84 5.22 30.59 0.16 -2.68 16 3 C -0.12 -2.27 4.08 29.85 0.12 -2.15 16 4 C 0.48 14.18 7.56 87.66 0.66 14.84 16 5 O -0.55 -24.26 11.51 20.71 0.24 -24.02 16 6 N -0.60 -13.24 2.97 -799.17 -2.38 -15.62 16 7 C 0.10 1.00 6.33 86.36 0.55 1.55 16 8 C -0.14 -1.24 6.08 30.67 0.19 -1.06 16 9 C -0.11 -1.25 5.88 30.62 0.18 -1.07 16 10 C -0.12 -2.58 5.29 30.67 0.16 -2.42 16 11 C 0.14 3.46 3.32 44.23 0.15 3.61 16 12 H 0.12 2.08 7.93 -2.39 -0.02 2.06 16 13 C 0.52 20.47 4.37 87.66 0.38 20.85 16 14 O -0.57 -28.77 11.65 20.66 0.24 -28.53 16 15 N -0.62 -25.17 5.47 -303.92 -1.66 -26.83 16 16 C -0.03 -1.34 6.90 37.73 0.26 -1.08 16 17 C -0.06 -3.56 10.85 85.42 0.93 -2.63 16 18 N -0.31 -20.78 10.40 -56.46 -0.59 -21.37 16 19 N -0.17 -10.29 3.74 -190.01 -0.71 -11.00 16 20 C -0.36 -20.35 10.25 84.01 0.86 -19.48 16 21 H 0.14 6.88 7.83 -2.91 -0.02 6.85 16 22 C -0.01 -0.55 5.50 84.95 0.47 -0.08 16 23 N -0.83 -51.23 11.81 21.66 0.26 -50.97 16 24 Si 1.02 41.06 29.55 68.60 2.03 43.09 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 27 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 28 C -0.09 -4.68 11.49 83.38 0.96 -3.73 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 1.22 8.10 -2.39 -0.02 1.21 16 33 H 0.03 1.09 8.10 -2.38 -0.02 1.07 16 34 H 0.12 1.57 7.54 -2.39 -0.02 1.55 16 35 H 0.13 1.47 8.07 -2.39 -0.02 1.45 16 36 H 0.11 0.61 5.95 -2.39 -0.01 0.60 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.04 1.29 7.86 -2.39 -0.02 1.27 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.41 12.46 8.68 -92.70 -0.80 11.66 16 45 H 0.15 10.00 5.92 -2.91 -0.02 9.99 16 46 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.19 7.60 8.06 -2.91 -0.02 7.58 16 Total: -1.00 -97.08 377.09 4.35 -92.73 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: 0.18 Total: 39.67 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.74 Total: 2.86 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -5.08 Total: -125.79 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: 0.48 Total: -52.55 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -97.08 4.35 -92.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.386 kcal (2) G-P(sol) polarization free energy of solvation -97.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds