Wall clock time and date at job start Tue Mar 31 2020 17:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47078 * 2 1 4 4 C 1.53004 * 109.47040 * 239.99971 * 2 1 3 5 5 C 1.50702 * 109.47137 * 120.00329 * 2 1 3 6 6 C 1.40956 * 126.73292 * 74.99866 * 5 2 1 7 7 C 1.36524 * 103.91864 * 180.02562 * 6 5 2 8 8 N 1.38722 * 126.87959 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00036 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99856 * 359.71845 * 9 8 7 11 11 C 1.50707 * 119.99985 * 179.72783 * 9 8 7 12 12 N 1.46901 * 109.46738 * 179.97438 * 11 9 8 13 13 C 1.46904 * 110.99320 * 189.99891 * 12 11 9 14 14 C 1.50703 * 109.46809 * 164.61229 * 13 12 11 15 15 H 1.08004 * 120.00154 * 1.03542 * 14 13 12 16 16 C 1.37875 * 120.00013 * 181.04097 * 14 13 12 17 17 N 1.31515 * 120.00200 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00058 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46990 * 90.00205 * 18 16 14 20 20 H 1.48502 * 109.47449 * 210.00268 * 18 16 14 21 21 H 1.48502 * 109.47181 * 330.00558 * 18 16 14 22 22 C 1.46893 * 111.00300 * 66.04538 * 12 11 9 23 23 C 1.53003 * 109.47142 * 60.52741 * 22 12 11 24 24 C 1.47201 * 109.47270 * 178.19864 * 23 22 12 25 25 N 9.95090 * 83.47624 * 108.79198 * 2 1 3 26 26 O 1.34254 * 106.24099 * 0.25993 * 7 6 5 27 27 N 1.20907 * 111.48284 * 359.53076 * 26 7 6 28 28 H 1.08995 * 109.47060 * 299.99442 * 1 2 3 29 29 H 1.08997 * 109.47020 * 60.00153 * 1 2 3 30 30 H 1.08999 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46775 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47070 * 299.99816 * 3 2 1 33 33 H 1.09008 * 109.46774 * 60.00049 * 3 2 1 34 34 H 1.08999 * 109.47499 * 300.00183 * 4 2 1 35 35 H 1.09002 * 109.46921 * 60.00296 * 4 2 1 36 36 H 1.09002 * 109.47000 * 179.97438 * 4 2 1 37 37 H 1.07992 * 128.03891 * 0.03699 * 6 5 2 38 38 H 0.97004 * 120.00314 * 359.72544 * 8 7 6 39 39 H 1.08995 * 109.46859 * 299.99758 * 11 9 8 40 40 H 1.09000 * 109.46944 * 60.00154 * 11 9 8 41 41 H 1.08996 * 109.46933 * 284.60507 * 13 12 11 42 42 H 1.08990 * 109.47417 * 44.60983 * 13 12 11 43 43 H 0.96994 * 120.00224 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.47505 * 180.53006 * 22 12 11 45 45 H 1.08999 * 109.47226 * 300.52936 * 22 12 11 46 46 H 1.09002 * 109.47421 * 298.19923 * 23 22 12 47 47 H 1.09000 * 109.46924 * 58.20044 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 2.0377 -2.1016 1.4575 7 6 2.5858 -2.2292 2.7014 8 7 2.8145 -3.4096 3.3933 9 6 3.3675 -3.3743 4.6219 10 8 3.6700 -2.3109 5.1203 11 6 3.6102 -4.6563 5.3761 12 7 4.2171 -4.3507 6.6785 13 6 4.6848 -5.5753 7.3415 14 6 5.6200 -5.2119 8.4660 15 1 5.8313 -4.1743 8.6787 16 6 6.2058 -6.2039 9.2234 17 7 7.0223 -5.8868 10.2044 18 14 5.8399 -7.9985 8.8561 19 1 6.8248 -8.5130 7.8709 20 1 5.9339 -8.7896 10.1093 21 1 4.4699 -8.1198 8.2958 22 6 3.2800 -3.6129 7.5359 23 6 2.0310 -4.4632 7.7763 24 6 1.1108 -3.7418 8.6705 25 7 0.3995 -3.1848 9.3595 26 8 2.8545 -0.9832 3.1229 27 7 2.5466 -0.1591 2.2935 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.6894 -2.8845 0.8003 38 1 2.5730 -4.2603 2.9944 39 1 2.6627 -5.1730 5.5286 40 1 4.2834 -5.2934 4.8025 41 1 3.8302 -6.1208 7.7417 42 1 5.2100 -6.2012 6.6202 43 1 7.4341 -6.5847 10.7374 44 1 3.7579 -3.3913 8.4901 45 1 2.9964 -2.6811 7.0466 46 1 1.5353 -4.6579 6.8252 47 1 2.3182 -5.4086 8.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072948135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:35 Heat of formation + Delta-G solvation = 37.763402 kcal Electronic energy + Delta-G solvation = -28509.329269 eV Core-core repulsion = 24502.231741 eV Total energy + Delta-G solvation = -4007.097528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.84790 -41.26582 -38.92722 -38.41084 -37.34521 -36.43666 -34.59328 -33.55563 -32.23752 -31.61803 -30.22808 -28.25385 -28.11909 -27.46797 -25.19247 -24.86732 -23.51542 -22.49753 -21.25807 -20.13798 -19.23886 -18.73536 -18.65016 -18.53189 -18.05218 -17.00862 -16.75530 -16.31911 -16.21908 -15.71241 -15.47834 -15.32625 -15.15435 -15.03534 -14.85941 -14.62843 -14.40156 -14.24195 -13.70267 -13.47455 -13.22363 -13.16614 -13.07791 -13.03493 -12.73578 -12.57426 -12.53878 -12.42719 -12.40910 -12.25831 -12.19251 -12.06550 -11.87159 -11.63859 -11.56537 -11.41769 -10.95358 -10.93837 -10.65687 -9.48719 -8.93492 -8.15204 -6.19567 0.39429 1.25453 1.28474 1.47556 1.50858 1.60107 1.71947 1.76229 1.77944 2.42280 2.47040 2.93369 3.13051 3.20307 3.41114 3.62700 3.89492 4.02029 4.05161 4.10404 4.11462 4.13603 4.28904 4.38631 4.47341 4.55467 4.59253 4.74095 4.75525 4.78189 4.88850 4.92666 5.00331 5.02029 5.09038 5.13203 5.15297 5.25371 5.32645 5.36016 5.39194 5.44418 5.65598 5.97618 6.14277 6.31568 6.57476 6.71026 6.90168 7.01171 7.42730 7.43615 9.02435 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.002451 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.517898 B =11419.560152 C =12166.878152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 C -0.139 4.139 4 C -0.134 4.134 5 C 0.049 3.951 6 C -0.257 4.257 7 C 0.204 3.796 8 N -0.610 5.610 9 C 0.506 3.494 10 O -0.525 6.525 11 C 0.031 3.969 12 N -0.530 5.530 13 C 0.166 3.834 14 C -0.513 4.513 15 H 0.024 0.976 16 C -0.003 4.003 17 N -0.960 5.960 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.299 1.299 21 H -0.219 1.219 22 C 0.069 3.931 23 C -0.063 4.063 24 C 0.240 3.760 25 N -0.499 5.499 26 O 0.067 5.933 27 N -0.406 5.406 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.214 0.786 38 H 0.454 0.546 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.028 0.972 42 H 0.050 0.950 43 H 0.262 0.738 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.145 0.855 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -1.013 -28.975 32.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 C -0.197 4.197 4 C -0.191 4.191 5 C -0.110 4.110 6 C -0.283 4.283 7 C 0.043 3.957 8 N -0.268 5.268 9 C 0.295 3.705 10 O -0.397 6.397 11 C -0.099 4.099 12 N -0.253 5.253 13 C 0.040 3.960 14 C -0.551 4.551 15 H 0.042 0.958 16 C -0.199 4.199 17 N -0.602 5.602 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.226 1.226 21 H -0.141 1.141 22 C -0.061 4.061 23 C -0.104 4.104 24 C -0.077 4.077 25 N -0.177 5.177 26 O 0.012 5.988 27 N -0.120 5.120 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.230 0.770 38 H 0.299 0.701 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.163 0.837 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.752 2.004 -27.055 31.370 hybrid contribution 0.143 -1.785 0.484 1.855 sum -15.609 0.219 -26.571 30.817 Atomic orbital electron populations 1.21853 0.91578 1.03312 1.02446 1.19199 0.96715 0.94446 0.89061 1.21815 1.00590 0.94927 1.02325 1.21864 1.00856 1.01296 0.95105 1.23739 0.98503 0.92682 0.96052 1.22159 1.12712 0.97347 0.96053 1.21302 0.98888 0.83220 0.92256 1.42801 1.61399 1.05749 1.16852 1.21745 0.75360 0.92797 0.80626 1.90823 1.47989 1.33621 1.67236 1.22272 1.03748 0.92399 0.91461 1.61639 1.36728 1.24481 1.02406 1.20168 0.94956 0.87506 0.93385 1.21316 1.26241 0.93305 1.14278 0.95809 1.26009 0.94545 1.04827 0.94496 1.70110 1.32776 1.35040 1.22243 0.85693 0.81529 0.77894 0.77630 1.19255 1.22619 1.14084 1.22011 0.89166 0.96887 0.98011 1.20300 0.92552 0.99561 0.98018 1.29508 0.92654 0.92523 0.92966 1.81187 1.13135 1.11372 1.12012 1.85106 1.63945 1.11912 1.37882 1.73980 1.20990 1.14651 1.02380 0.94211 0.89632 0.90795 0.93778 0.89695 0.94009 0.90342 0.89902 0.93308 0.76957 0.70050 0.86394 0.84089 0.95486 0.93193 0.92899 0.92853 0.90286 0.83718 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.46 71.98 0.61 -0.84 16 2 C 0.01 0.10 0.97 -52.93 -0.05 0.04 16 3 C -0.14 -2.25 8.06 71.98 0.58 -1.67 16 4 C -0.13 -1.18 8.22 71.98 0.59 -0.58 16 5 C 0.05 1.00 5.69 43.45 0.25 1.25 16 6 C -0.26 -3.90 10.51 22.54 0.24 -3.66 16 7 C 0.20 4.29 7.92 83.20 0.66 4.95 16 8 N -0.61 -9.02 5.39 -419.70 -2.26 -11.28 16 9 C 0.51 11.62 7.51 87.66 0.66 12.28 16 10 O -0.52 -18.61 13.15 17.44 0.23 -18.38 16 11 C 0.03 0.59 5.21 85.56 0.45 1.04 16 12 N -0.53 -17.25 4.40 -905.38 -3.98 -21.23 16 13 C 0.17 6.09 3.67 85.56 0.31 6.40 16 14 C -0.51 -26.95 9.11 25.60 0.23 -26.72 16 15 H 0.02 1.48 7.70 -2.91 -0.02 1.46 16 16 C 0.00 -0.16 5.47 84.65 0.46 0.30 16 17 N -0.96 -58.87 13.96 21.45 0.30 -58.57 16 18 Si 0.95 38.55 27.45 68.60 1.88 40.43 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.30 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.22 -7.14 6.57 99.48 0.65 -6.48 16 22 C 0.07 2.29 4.81 86.31 0.42 2.70 16 23 C -0.06 -1.48 5.05 28.79 0.15 -1.34 16 24 C 0.24 7.27 15.43 89.44 1.38 8.65 16 25 N -0.50 -17.99 18.54 20.01 0.37 -17.62 16 26 O 0.07 2.07 9.63 90.08 0.87 2.94 16 27 N -0.41 -11.84 11.45 -49.00 -0.56 -12.40 16 28 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.83 8.10 -2.38 -0.02 0.81 16 34 H 0.08 0.43 7.72 -2.39 -0.02 0.41 16 35 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.21 1.20 7.91 -2.91 -0.02 1.18 16 38 H 0.45 1.63 8.82 -92.71 -0.82 0.81 16 39 H 0.12 1.11 6.05 -2.39 -0.01 1.10 16 40 H 0.14 1.90 7.87 -2.39 -0.02 1.89 16 41 H 0.03 0.88 5.01 -2.39 -0.01 0.87 16 42 H 0.05 1.67 7.19 -2.39 -0.02 1.65 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.05 2.23 7.15 -2.39 -0.02 2.21 16 45 H 0.08 2.75 5.87 -2.39 -0.01 2.74 16 46 H 0.15 2.00 6.38 -2.39 -0.02 1.98 16 47 H 0.13 2.89 6.18 -2.39 -0.01 2.87 16 Total: -1.00 -86.73 388.10 3.91 -82.82 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.14 Total: 10.47 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 6.93 Total: 2.81 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.14 Total: -121.09 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 1.10 Total: -15.44 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.88 Total: 40.43 kcal Total: -86.73 3.91 -82.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072948135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.587 kcal (2) G-P(sol) polarization free energy of solvation -86.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds