Wall clock time and date at job start Tue Mar 31 2020 18:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47588 * 2 1 4 4 H 1.09000 * 109.49825 * 304.93641 * 3 2 1 5 5 C 1.53034 * 109.50044 * 184.83846 * 3 2 1 6 6 C 1.53041 * 109.53689 * 178.68512 * 5 3 2 7 7 C 1.52763 * 109.38707 * 61.23940 * 6 5 3 8 8 N 1.46924 * 109.00322 * 305.58809 * 7 6 5 9 9 C 1.34779 * 120.62729 * 233.57910 * 8 7 6 10 10 O 1.21361 * 119.99899 * 181.63336 * 9 8 7 11 11 C 1.49348 * 120.00130 * 1.63737 * 9 8 7 12 12 O 1.21385 * 119.99737 * 353.04171 * 11 9 8 13 13 N 1.34771 * 120.00011 * 173.04473 * 11 9 8 14 14 C 1.39928 * 119.99988 * 180.02562 * 13 11 9 15 15 C 1.40464 * 125.98182 * 359.97438 * 14 13 11 16 16 C 1.35214 * 107.87002 * 179.97438 * 15 14 13 17 17 N 1.34983 * 107.87527 * 0.02562 * 16 15 14 18 18 C 1.46498 * 125.97193 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47542 * 124.99628 * 18 17 16 20 20 H 1.07993 * 119.99405 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99798 * 179.72351 * 19 18 17 22 22 N 1.31507 * 120.00335 * 0.27574 * 21 19 18 23 23 Si 1.86804 * 119.99490 * 180.27714 * 21 19 18 24 24 H 1.48504 * 109.47012 * 90.00419 * 23 21 19 25 25 H 1.48506 * 109.46764 * 209.99945 * 23 21 19 26 26 H 1.48494 * 109.47291 * 329.99856 * 23 21 19 27 27 N 1.31273 * 125.98446 * 180.26266 * 14 13 11 28 28 C 1.46929 * 118.74093 * 53.31214 * 8 7 6 29 29 H 1.09001 * 109.47338 * 300.00378 * 1 2 3 30 30 H 1.09003 * 109.46820 * 59.99669 * 1 2 3 31 31 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46762 * 239.99801 * 2 1 3 33 33 H 1.09003 * 109.46820 * 120.00331 * 2 1 3 34 34 H 1.09001 * 109.45606 * 298.70192 * 5 3 2 35 35 H 1.08999 * 109.46254 * 58.66317 * 5 3 2 36 36 H 1.09008 * 109.49462 * 181.31475 * 6 5 3 37 37 H 1.09000 * 109.49818 * 301.37667 * 6 5 3 38 38 H 1.08996 * 109.50726 * 185.70739 * 7 6 5 39 39 H 1.09003 * 109.42986 * 65.41943 * 7 6 5 40 40 H 0.97000 * 119.99956 * 359.97438 * 13 11 9 41 41 H 1.08008 * 126.05873 * 359.95814 * 15 14 13 42 42 H 1.07995 * 126.05796 * 180.02562 * 16 15 14 43 43 H 1.09007 * 109.47039 * 4.99397 * 18 17 16 44 44 H 1.09004 * 109.46934 * 245.00109 * 18 17 16 45 45 H 0.96996 * 120.00099 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58805 * 66.42467 * 28 8 7 47 47 H 1.09001 * 109.58288 * 186.85024 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6067 1.9816 -0.8423 5 6 3.5656 1.4448 -0.1217 6 6 4.0742 2.8878 -0.1547 7 6 3.6915 3.5903 1.1467 8 7 2.2417 3.4656 1.3493 9 6 1.4817 4.5580 1.5628 10 8 0.2898 4.4392 1.7583 11 6 2.1062 5.9146 1.5588 12 8 3.3129 6.0270 1.4899 13 7 1.3301 7.0140 1.6319 14 6 1.9152 8.2850 1.6276 15 6 3.2906 8.5601 1.5524 16 6 3.4469 9.9030 1.5748 17 7 2.2211 10.4615 1.6612 18 6 1.9310 11.8965 1.7130 19 6 0.9650 12.2538 0.6129 20 1 0.6031 11.4884 -0.0575 21 6 0.5385 13.5567 0.4662 22 7 0.9789 14.4887 1.2829 23 14 -0.6649 13.9981 -0.8927 24 1 -2.0544 13.8622 -0.3867 25 1 -0.4305 15.3992 -1.3255 26 1 -0.4663 13.0840 -2.0460 27 7 1.2752 9.4290 1.6984 28 6 1.6351 2.1279 1.3088 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9989 0.9266 0.7338 35 1 3.8575 0.9358 -1.0403 36 1 5.1587 2.8889 -0.2649 37 1 3.6225 3.4136 -0.9960 38 1 3.9625 4.6442 1.0847 39 1 4.2183 3.1236 1.9791 40 1 0.3658 6.9241 1.6866 41 1 4.0827 7.8286 1.4884 42 1 4.3861 10.4344 1.5311 43 1 2.8554 12.4591 1.5817 44 1 1.4895 12.1433 2.6786 45 1 0.6792 15.4053 1.1794 46 1 1.9908 1.5396 2.1546 47 1 0.5497 2.2174 1.3539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086449446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:32 Heat of formation + Delta-G solvation = 20.540418 kcal Electronic energy + Delta-G solvation = -28466.323047 eV Core-core repulsion = 24458.478675 eV Total energy + Delta-G solvation = -4007.844373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.37738 -40.44289 -39.02239 -38.03093 -35.52651 -34.50621 -33.39661 -32.60118 -31.07795 -29.73664 -29.45420 -27.35845 -26.43525 -24.59366 -24.25601 -22.77391 -21.79409 -21.37730 -20.48237 -19.95261 -19.52102 -17.64120 -17.16360 -16.63720 -16.57469 -16.22401 -15.75812 -15.56979 -15.14109 -14.78295 -14.59855 -14.34875 -14.19276 -14.03721 -13.89670 -13.77661 -13.26762 -12.99929 -12.94015 -12.60488 -12.41583 -12.31875 -12.04888 -11.90528 -11.63260 -11.35006 -11.22269 -11.09126 -11.06154 -10.90187 -10.84199 -10.65300 -10.58823 -10.29138 -10.00706 -9.56998 -9.10347 -9.01017 -8.66348 -8.27088 -7.62286 -6.27519 -4.32772 1.14712 1.98894 2.62671 2.98119 3.06375 3.22902 3.28829 3.33884 3.61419 3.71707 4.17361 4.28631 4.32538 4.38389 4.48880 4.73417 4.91205 4.93517 4.97305 5.05459 5.07874 5.24709 5.28727 5.38314 5.40995 5.51018 5.55758 5.59764 5.60615 5.66939 5.70019 5.80618 5.85435 5.89906 6.04719 6.08598 6.13473 6.34578 6.51551 6.76702 6.88055 6.99484 7.20333 7.28333 7.59180 7.66939 7.82516 7.91703 7.94764 8.50478 8.75605 9.33215 10.81297 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002187 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.990173 B =12802.239954 C =13428.320085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.103 4.103 4 H 0.076 0.924 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.044 3.956 8 N -0.577 5.577 9 C 0.515 3.485 10 O -0.520 6.520 11 C 0.518 3.482 12 O -0.490 6.490 13 N -0.594 5.594 14 C 0.248 3.752 15 C -0.285 4.285 16 C 0.054 3.946 17 N -0.313 5.313 18 C 0.257 3.743 19 C -0.530 4.530 20 H 0.069 0.931 21 C 0.063 3.937 22 N -0.894 5.894 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.272 1.272 27 N -0.293 5.293 28 C 0.111 3.889 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.067 0.933 40 H 0.424 0.576 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.268 0.732 46 H 0.072 0.928 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 -26.947 -1.109 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.122 4.122 4 H 0.094 0.906 5 C -0.155 4.155 6 C -0.172 4.172 7 C -0.076 4.076 8 N -0.310 5.310 9 C 0.297 3.703 10 O -0.396 6.396 11 C 0.299 3.701 12 O -0.366 6.366 13 N -0.241 5.241 14 C -0.004 4.004 15 C -0.316 4.316 16 C -0.096 4.096 17 N -0.095 5.095 18 C 0.140 3.860 19 C -0.568 4.568 20 H 0.087 0.913 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.125 5.125 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.177 0.823 39 H 0.085 0.915 40 H 0.262 0.738 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.430 -26.029 -0.903 26.605 hybrid contribution -0.318 -0.158 -0.732 0.813 sum 5.112 -26.187 -1.634 26.732 Atomic orbital electron populations 1.21851 0.95595 1.01731 1.02330 1.21517 0.96139 0.95383 1.02308 1.21576 0.96323 0.96341 0.97995 0.90557 1.21630 0.94652 0.97046 1.02176 1.21838 1.01465 0.95613 0.98265 1.23309 0.78106 1.09162 0.97063 1.47923 1.09361 1.05573 1.68176 1.19761 0.86519 0.85313 0.78680 1.90779 1.14475 1.86315 1.48011 1.19996 0.86805 0.85303 0.77995 1.90240 1.13744 1.84424 1.48147 1.42027 1.11520 1.01926 1.68629 1.19017 0.91988 0.84684 1.04744 1.21509 0.94932 0.95235 1.19925 1.22587 0.91188 0.93738 1.02114 1.49179 1.02110 1.07478 1.50777 1.19810 0.98815 0.67992 0.99430 1.21240 1.26826 0.94360 1.14423 0.91265 1.24942 0.96515 0.95864 0.96723 1.69909 1.43964 1.02023 1.37359 0.86316 0.81007 0.77565 0.81555 1.20285 1.20965 1.19700 1.77414 1.15225 0.92884 1.26940 1.21875 1.00176 0.81553 0.97507 0.92309 0.92578 0.92671 0.91560 0.91751 0.91734 0.91659 0.90387 0.91568 0.82268 0.91498 0.73849 0.82084 0.81199 0.92329 0.93536 0.92273 0.90976 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.65 5.41 -26.73 -0.14 -0.80 16 3 C -0.10 -0.73 2.34 -90.50 -0.21 -0.94 16 4 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.12 -0.75 5.17 -26.69 -0.14 -0.89 16 6 C -0.13 -1.01 6.06 -26.83 -0.16 -1.17 16 7 C 0.04 0.41 6.20 -3.93 -0.02 0.38 16 8 N -0.58 -6.10 2.98 -173.57 -0.52 -6.62 16 9 C 0.52 6.76 7.76 -11.63 -0.09 6.67 16 10 O -0.52 -7.75 15.91 5.49 0.09 -7.67 16 11 C 0.52 7.47 7.77 -11.64 -0.09 7.38 16 12 O -0.49 -7.18 10.14 5.47 0.06 -7.13 16 13 N -0.59 -9.57 5.43 -11.58 -0.06 -9.63 16 14 C 0.25 4.84 8.10 -154.55 -1.25 3.58 16 15 C -0.28 -5.22 9.60 -39.82 -0.38 -5.60 16 16 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 17 N -0.31 -7.05 3.67 -62.56 -0.23 -7.28 16 18 C 0.26 6.37 6.26 -5.19 -0.03 6.34 16 19 C -0.53 -14.54 9.24 -34.44 -0.32 -14.86 16 20 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 23 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 N -0.29 -6.64 12.43 31.41 0.39 -6.25 16 28 C 0.11 0.96 5.32 -3.71 -0.02 0.94 16 29 H 0.06 0.38 6.70 -51.93 -0.35 0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.16 1.77 3.79 -56.99 -0.22 1.55 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.42 6.34 8.31 -40.82 -0.34 6.00 16 41 H 0.16 2.70 5.91 -52.48 -0.31 2.39 16 42 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 43 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.94 5.73 -51.93 -0.30 0.64 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -30.48 380.88 -8.59 -39.07 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.97 Total: 4.96 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.80 Total: 2.86 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.32 Total: -54.05 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.14 Total: -14.79 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.48 -8.59 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086449446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.613 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds