Wall clock time and date at job start Tue Mar 31 2020 18:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.50706 * 109.46995 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00160 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99667 * 180.02562 * 4 3 2 7 7 C 1.47425 * 125.65136 * 359.95409 * 6 4 3 8 8 C 1.54915 * 104.83334 * 204.16738 * 7 6 4 9 9 C 1.55165 * 101.57980 * 322.99105 * 8 7 6 10 10 C 1.47022 * 125.64528 * 180.02562 * 6 4 3 11 11 H 1.08998 * 109.88661 * 298.31659 * 10 6 4 12 12 C 1.50704 * 110.01106 * 59.41293 * 10 6 4 13 13 O 1.21284 * 119.99991 * 359.33767 * 12 10 6 14 14 N 1.34778 * 119.99707 * 179.33800 * 12 10 6 15 15 C 1.40154 * 119.99796 * 180.02562 * 14 12 10 16 16 C 1.40414 * 125.97438 * 359.71248 * 15 14 12 17 17 C 1.35237 * 107.86876 * 179.83053 * 16 15 14 18 18 N 1.34970 * 107.85794 * 0.43012 * 17 16 15 19 19 C 1.46507 * 125.97172 * 179.69003 * 18 17 16 20 20 C 1.50705 * 109.46971 * 125.02187 * 19 18 17 21 21 H 1.07996 * 119.99624 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00056 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99757 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00358 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47032 * 60.00001 * 24 22 20 26 26 H 1.48494 * 109.47434 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47144 * 300.00528 * 24 22 20 28 28 N 1.31217 * 125.97459 * 180.02562 * 15 14 12 29 29 H 1.08998 * 109.47173 * 299.99952 * 1 2 3 30 30 H 1.09009 * 109.47265 * 59.99701 * 1 2 3 31 31 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47173 * 240.00048 * 2 1 3 33 33 H 1.08998 * 109.47071 * 119.99859 * 2 1 3 34 34 H 1.08997 * 109.47171 * 60.00537 * 3 2 1 35 35 H 1.09002 * 109.47527 * 299.99938 * 3 2 1 36 36 H 1.08997 * 110.36855 * 323.00479 * 7 6 4 37 37 H 1.08999 * 110.36490 * 85.21794 * 7 6 4 38 38 H 1.08995 * 111.00392 * 204.91661 * 8 7 6 39 39 H 1.09001 * 111.00387 * 81.05917 * 8 7 6 40 40 H 1.08993 * 110.71917 * 277.13865 * 9 8 7 41 41 H 1.09002 * 110.71751 * 153.86437 * 9 8 7 42 42 H 0.97001 * 120.00559 * 0.02562 * 14 12 10 43 43 H 1.07998 * 126.06018 * 359.97438 * 16 15 14 44 44 H 1.07997 * 126.06938 * 180.16484 * 17 16 15 45 45 H 1.09005 * 109.46782 * 245.02095 * 19 18 17 46 46 H 1.08995 * 109.47521 * 5.02271 * 19 18 17 47 47 H 0.97003 * 119.99477 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6097 -0.0002 7 6 3.6129 3.9528 -0.0001 8 6 4.6943 4.8776 -0.6127 9 6 5.9949 4.2657 -0.0282 10 6 5.6839 2.7544 -0.0013 11 1 6.1014 2.3063 0.9003 12 6 6.2670 2.0891 -1.2213 13 8 5.5384 1.5321 -2.0149 14 7 7.5983 2.1131 -1.4305 15 6 8.1405 1.4948 -2.5654 16 6 7.4181 0.8133 -3.5580 17 6 8.3003 0.3670 -4.4807 18 7 9.5359 0.7406 -4.0866 19 6 10.7873 0.4564 -4.7936 20 6 11.5227 1.7464 -5.0514 21 1 11.0999 2.6840 -4.7219 22 6 12.7350 1.7295 -5.7077 23 7 13.2495 0.5876 -6.1093 24 14 13.6462 3.3283 -6.0279 25 1 13.9475 3.9938 -4.7350 26 1 14.9146 3.0403 -6.7443 27 1 12.8005 4.2221 -6.8593 28 7 9.4127 1.4466 -2.8831 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.7132 3.9620 -0.6152 37 1 3.3786 4.2630 1.0182 38 1 4.5626 5.9069 -0.2794 39 1 4.6890 4.8173 -1.7011 40 1 6.1784 4.6400 0.9788 41 1 6.8447 4.4729 -0.6786 42 1 8.1811 2.5582 -0.7956 43 1 6.3475 0.6728 -3.5816 44 1 8.0593 -0.1929 -5.3722 45 1 11.4080 -0.2001 -4.1838 46 1 10.5657 -0.0314 -5.7427 47 1 14.1023 0.5758 -6.5714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117711826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:14 Heat of formation + Delta-G solvation = -14.360381 kcal Electronic energy + Delta-G solvation = -28701.344495 eV Core-core repulsion = 24691.986711 eV Total energy + Delta-G solvation = -4009.357785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.36880 -41.57946 -39.98732 -38.25866 -36.26497 -35.31065 -35.28824 -33.10665 -32.53777 -31.05950 -30.70095 -28.76067 -28.42819 -25.52785 -24.76089 -23.58829 -22.69348 -22.39279 -21.73289 -20.82327 -20.06554 -18.71276 -18.62629 -18.16632 -18.02239 -17.20120 -16.82744 -16.59356 -16.48279 -16.04864 -15.92616 -15.37984 -14.99573 -14.85643 -14.54593 -14.42458 -14.23190 -14.20328 -13.87592 -13.73838 -13.65745 -13.55538 -12.96509 -12.85978 -12.73076 -12.66278 -12.37234 -12.29703 -12.25341 -12.06814 -11.99192 -11.94437 -11.64431 -11.61888 -11.42547 -10.90614 -10.86143 -10.73311 -9.80865 -9.71711 -9.16667 -8.34298 -6.48971 0.90641 1.23083 1.36850 1.39881 1.41579 1.49368 1.72869 1.95032 2.17389 2.30160 2.42395 2.97301 3.37659 3.48556 3.62941 3.80174 3.93858 3.99841 4.04483 4.11258 4.20795 4.28203 4.49420 4.56069 4.67823 4.70359 4.72262 4.78217 4.83293 4.84872 4.86790 4.89874 4.92685 4.99068 5.05004 5.10410 5.22703 5.24217 5.27150 5.32284 5.46350 5.54536 5.77095 5.87871 6.19667 6.25153 6.50205 6.61991 6.95730 7.08954 7.20824 7.23610 8.73414 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002392 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.583208 B =11700.636778 C =12700.140019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.520 3.480 5 O -0.581 6.581 6 N -0.609 5.609 7 C 0.096 3.904 8 C -0.131 4.131 9 C -0.119 4.119 10 C 0.124 3.876 11 H 0.114 0.886 12 C 0.506 3.494 13 O -0.534 6.534 14 N -0.624 5.624 15 C 0.268 3.732 16 C -0.296 4.296 17 C 0.056 3.944 18 N -0.343 5.343 19 C 0.272 3.728 20 C -0.548 4.548 21 H 0.054 0.946 22 C 0.016 3.984 23 N -0.921 5.921 24 Si 0.975 3.025 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.269 1.269 28 N -0.342 5.342 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.056 0.944 40 H 0.129 0.871 41 H 0.083 0.917 42 H 0.424 0.576 43 H 0.158 0.842 44 H 0.200 0.800 45 H 0.021 0.979 46 H 0.058 0.942 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.943 10.940 16.142 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.162 4.162 4 C 0.311 3.689 5 O -0.459 6.459 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.169 4.169 9 C -0.157 4.157 10 C 0.016 3.984 11 H 0.131 0.869 12 C 0.293 3.707 13 O -0.408 6.408 14 N -0.275 5.275 15 C 0.013 3.987 16 C -0.327 4.327 17 C -0.092 4.092 18 N -0.125 5.125 19 C 0.154 3.846 20 C -0.586 4.586 21 H 0.072 0.928 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.799 3.201 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.194 1.194 28 N -0.173 5.173 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.262 0.738 43 H 0.175 0.825 44 H 0.217 0.783 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.810 10.126 15.778 30.304 hybrid contribution 0.650 -0.129 -0.613 0.903 sum -23.160 9.997 15.164 29.432 Atomic orbital electron populations 1.21735 0.93120 1.02372 1.02930 1.21266 0.97120 0.95076 1.01528 1.21710 0.88173 0.99948 1.06329 1.21245 0.91694 0.81706 0.74272 1.90716 1.71616 1.32690 1.50913 1.48523 1.04728 1.07595 1.73439 1.22735 0.97280 0.79066 1.03410 1.22865 0.92866 1.01001 1.00190 1.22831 0.99616 0.87807 1.05475 1.21623 0.83435 0.99389 0.93963 0.86888 1.21873 0.80446 0.79663 0.88756 1.90615 1.59794 1.43207 1.47165 1.42606 1.08129 1.54858 1.21923 1.19449 0.90973 0.97604 0.90664 1.21628 1.01244 1.12224 0.97631 1.23112 0.84192 1.00692 1.01250 1.48858 1.07677 1.39795 1.16135 1.19359 0.77638 0.97047 0.90587 1.21349 1.05769 0.92880 1.38598 0.92808 1.25798 0.97442 1.00668 0.94508 1.70004 1.19855 1.27057 1.39060 0.85351 0.77679 0.78573 0.78537 1.19652 1.19812 1.19378 1.77241 1.16045 1.21527 1.02493 0.90893 0.91875 0.92560 0.94225 0.92750 0.85622 0.87433 0.88977 0.87382 0.85724 0.92556 0.85282 0.89874 0.73837 0.82503 0.78330 0.96139 0.92467 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.11 -2.03 5.22 30.59 0.16 -1.87 16 3 C -0.12 -1.82 4.71 29.85 0.14 -1.68 16 4 C 0.52 12.78 7.00 87.66 0.61 13.40 16 5 O -0.58 -20.91 15.04 13.36 0.20 -20.71 16 6 N -0.61 -11.47 2.89 -792.16 -2.29 -13.76 16 7 C 0.10 0.80 6.69 86.86 0.58 1.38 16 8 C -0.13 -1.12 7.09 31.99 0.23 -0.89 16 9 C -0.12 -1.27 6.43 31.79 0.20 -1.06 16 10 C 0.12 2.46 3.29 44.60 0.15 2.61 16 11 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 12 C 0.51 15.74 6.70 87.66 0.59 16.33 16 13 O -0.53 -20.98 11.97 13.35 0.16 -20.82 16 14 N -0.62 -20.38 5.12 -307.51 -1.58 -21.95 16 15 C 0.27 11.48 8.11 133.33 1.08 12.56 16 16 C -0.30 -12.80 9.61 22.11 0.21 -12.59 16 17 C 0.06 2.41 11.44 83.52 0.96 3.36 16 18 N -0.34 -16.94 3.67 -351.82 -1.29 -18.23 16 19 C 0.27 14.62 6.26 85.63 0.54 15.16 16 20 C -0.55 -31.44 9.24 25.60 0.24 -31.21 16 21 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 22 C 0.02 0.90 5.46 84.65 0.46 1.37 16 23 N -0.92 -52.99 13.29 21.45 0.28 -52.70 16 24 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 N -0.34 -16.65 12.42 -54.45 -0.68 -17.32 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 0.95 8.10 -2.39 -0.02 0.94 16 33 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.29 7.85 -2.39 -0.02 1.27 16 36 H 0.09 0.57 7.48 -2.39 -0.02 0.55 16 37 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 1.07 7.43 -2.39 -0.02 1.05 16 42 H 0.42 10.86 8.64 -92.71 -0.80 10.06 16 43 H 0.16 6.84 5.92 -2.91 -0.02 6.82 16 44 H 0.20 6.85 8.06 -2.91 -0.02 6.82 16 45 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 47 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -84.60 389.55 3.88 -80.71 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.18 Total: 23.03 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 6.86 Total: 15.91 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.54 Total: -123.96 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: 0.36 Total: -41.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -84.60 3.88 -80.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.354 kcal (2) G-P(sol) polarization free energy of solvation -84.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds