Wall clock time and date at job start Tue Mar 31 2020 18:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47397 * 2 1 4 4 H 1.09003 * 109.58265 * 60.65098 * 3 2 1 5 5 C 1.53163 * 109.59151 * 300.21901 * 3 2 1 6 6 C 1.53036 * 109.33140 * 185.56653 * 5 3 2 7 7 C 1.53050 * 109.52468 * 61.36974 * 6 5 3 8 8 C 1.53194 * 109.31195 * 298.64381 * 7 6 5 9 9 N 1.46922 * 109.58884 * 180.93308 * 3 2 1 10 10 C 1.34776 * 120.63403 * 353.37459 * 9 3 2 11 11 O 1.21363 * 119.99880 * 355.04486 * 10 9 3 12 12 C 1.49342 * 120.00288 * 175.03476 * 10 9 3 13 13 O 1.21380 * 119.99670 * 6.30261 * 12 10 9 14 14 N 1.34777 * 119.99709 * 186.29680 * 12 10 9 15 15 C 1.39931 * 119.99455 * 180.02562 * 14 12 10 16 16 C 1.40457 * 125.98511 * 359.71804 * 15 14 12 17 17 C 1.35214 * 107.87036 * 179.82647 * 16 15 14 18 18 N 1.34990 * 107.87280 * 0.42985 * 17 16 15 19 19 C 1.46498 * 125.96629 * 179.72533 * 18 17 16 20 20 C 1.50705 * 109.46776 * 124.97964 * 19 18 17 21 21 H 1.08000 * 119.99874 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99943 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99768 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00003 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47592 * 89.99677 * 24 22 20 26 26 H 1.48497 * 109.47245 * 209.99786 * 24 22 20 27 27 H 1.48502 * 109.47194 * 329.99284 * 24 22 20 28 28 N 1.31273 * 125.98020 * 180.02562 * 15 14 12 29 29 H 1.08995 * 109.47640 * 295.08724 * 1 2 3 30 30 H 1.09007 * 109.46816 * 55.08677 * 1 2 3 31 31 H 1.08998 * 109.47316 * 175.08178 * 1 2 3 32 32 H 1.08999 * 109.47384 * 240.00096 * 2 1 3 33 33 H 1.09000 * 109.46812 * 120.00006 * 2 1 3 34 34 H 1.08999 * 109.47858 * 65.61576 * 5 3 2 35 35 H 1.08998 * 109.50144 * 305.53211 * 5 3 2 36 36 H 1.09002 * 109.46038 * 301.35940 * 6 5 3 37 37 H 1.09000 * 109.46485 * 181.38089 * 6 5 3 38 38 H 1.09004 * 109.49715 * 58.59513 * 7 6 5 39 39 H 1.08998 * 109.49860 * 178.68832 * 7 6 5 40 40 H 1.09002 * 109.58486 * 174.42271 * 8 7 6 41 41 H 1.08994 * 109.58497 * 294.70292 * 8 7 6 42 42 H 0.96999 * 120.00494 * 0.02562 * 14 12 10 43 43 H 1.08000 * 126.06399 * 359.96041 * 16 15 14 44 44 H 1.08007 * 126.06286 * 180.13399 * 17 16 15 45 45 H 1.09008 * 109.47138 * 244.97402 * 19 18 17 46 46 H 1.09000 * 109.47947 * 4.97614 * 19 18 17 47 47 H 0.97002 * 119.99735 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6873 1.9547 0.8952 5 6 1.5265 2.1688 -1.2469 6 6 2.1509 3.5644 -1.3133 7 6 3.6726 3.4394 -1.4196 8 6 4.2107 2.7274 -0.1745 9 7 3.5091 1.4455 -0.0225 10 6 4.2000 0.2942 0.0944 11 8 3.6136 -0.7463 0.3098 12 6 5.6873 0.2989 -0.0412 13 8 6.2842 1.3509 -0.1423 14 7 6.3666 -0.8651 -0.0513 15 6 7.7602 -0.8607 -0.1778 16 6 8.5735 0.2771 -0.3075 17 6 9.8569 -0.1386 -0.3995 18 7 9.8608 -1.4872 -0.3408 19 6 11.0441 -2.3480 -0.4104 20 6 11.0803 -3.2506 0.7959 21 1 10.3002 -3.1888 1.5402 22 6 12.1101 -4.1545 0.9500 23 7 13.0604 -4.2293 0.0439 24 14 12.1554 -5.2727 2.4456 25 1 11.4269 -6.5313 2.1450 26 1 13.5662 -5.5866 2.7864 27 1 11.5091 -4.5890 3.5946 28 7 8.5358 -1.9196 -0.2018 29 1 -0.3634 0.4357 0.9306 30 1 -0.3633 0.5882 -0.8428 31 1 -0.3634 -1.0238 -0.0881 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 0.4414 2.2578 -1.1946 35 1 1.8032 1.6037 -2.1369 36 1 1.8943 4.1203 -0.4116 37 1 1.7681 4.0923 -2.1867 38 1 3.9291 2.8623 -2.3081 39 1 4.1151 4.4330 -1.4904 40 1 5.2796 2.5476 -0.2897 41 1 4.0372 3.3478 0.7047 42 1 5.8896 -1.7059 0.0292 43 1 8.2342 1.3022 -0.3278 44 1 10.7245 0.4957 -0.5063 45 1 11.0004 -2.9534 -1.3159 46 1 11.9422 -1.7305 -0.4293 47 1 13.7846 -4.8655 0.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123841478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:50 Heat of formation + Delta-G solvation = 40.242969 kcal Electronic energy + Delta-G solvation = -28854.996514 eV Core-core repulsion = 24848.006508 eV Total energy + Delta-G solvation = -4006.990006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50585 -40.53202 -39.06839 -37.80858 -35.21734 -34.26252 -33.44462 -33.03045 -31.07377 -29.66008 -29.44619 -27.32600 -26.32638 -24.55052 -24.20343 -22.81047 -21.88728 -21.26021 -20.69848 -19.94069 -19.46636 -17.59062 -17.04086 -16.63121 -16.51643 -16.14001 -15.75279 -15.20731 -15.12717 -14.98746 -14.76160 -14.37653 -14.32368 -13.99064 -13.76852 -13.57639 -13.27403 -12.96004 -12.86056 -12.50223 -12.43515 -12.31936 -12.07827 -11.86975 -11.66940 -11.29281 -11.20810 -11.07226 -10.93310 -10.91130 -10.87806 -10.57045 -10.29307 -10.16901 -9.98357 -9.56488 -8.92948 -8.84685 -8.66236 -8.26863 -7.62075 -6.27488 -4.32700 1.15981 1.99626 2.63483 2.98604 3.06307 3.23076 3.28997 3.34161 3.62242 3.71876 4.18819 4.31022 4.41133 4.46570 4.57664 4.75387 4.87667 4.94896 5.07849 5.07959 5.17152 5.30237 5.35372 5.41927 5.41987 5.54552 5.58162 5.61060 5.68893 5.73294 5.82315 5.88314 5.96934 6.01729 6.09682 6.14657 6.33829 6.38677 6.55120 6.77343 6.92212 6.99437 7.21291 7.29648 7.62500 7.68049 7.82996 7.93470 7.94963 8.50780 8.75777 9.33310 10.81334 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002329 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.780663 B =12016.941115 C =12972.382960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C 0.143 3.857 4 H 0.076 0.924 5 C -0.132 4.132 6 C -0.123 4.123 7 C -0.132 4.132 8 C 0.040 3.960 9 N -0.574 5.574 10 C 0.516 3.484 11 O -0.512 6.512 12 C 0.514 3.486 13 O -0.491 6.491 14 N -0.594 5.594 15 C 0.248 3.752 16 C -0.285 4.285 17 C 0.054 3.946 18 N -0.314 5.314 19 C 0.257 3.743 20 C -0.530 4.530 21 H 0.069 0.931 22 C 0.063 3.937 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.293 5.293 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.066 0.934 42 H 0.424 0.576 43 H 0.162 0.838 44 H 0.171 0.829 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.683 15.935 -2.698 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.160 4.160 3 C 0.041 3.959 4 H 0.094 0.906 5 C -0.170 4.170 6 C -0.161 4.161 7 C -0.170 4.170 8 C -0.080 4.080 9 N -0.307 5.307 10 C 0.298 3.702 11 O -0.388 6.388 12 C 0.296 3.704 13 O -0.367 6.367 14 N -0.241 5.241 15 C -0.005 4.005 16 C -0.316 4.316 17 C -0.097 4.097 18 N -0.096 5.096 19 C 0.140 3.860 20 C -0.569 4.569 21 H 0.087 0.913 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.125 5.125 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.180 0.820 41 H 0.084 0.916 42 H 0.261 0.739 43 H 0.179 0.821 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.252 14.669 -2.655 25.959 hybrid contribution -0.190 -0.074 0.717 0.745 sum -21.442 14.595 -1.937 26.010 Atomic orbital electron populations 1.21971 0.96452 1.01883 1.01392 1.22168 0.94316 0.94084 1.05425 1.21499 0.77982 0.98140 0.98285 0.90570 1.22047 1.00611 0.96302 0.98034 1.21581 0.95835 0.96609 1.02079 1.21891 0.95474 1.01057 0.98611 1.23466 1.04023 0.82879 0.97630 1.47988 1.06586 1.06829 1.69307 1.19756 0.87325 0.84348 0.78761 1.90812 1.68852 1.31870 1.47270 1.20204 0.88561 0.83713 0.77926 1.90196 1.68815 1.29256 1.48402 1.42030 1.03912 1.09883 1.68276 1.19027 0.83176 0.93713 1.04537 1.21505 0.90814 0.99587 1.19682 1.22592 0.98982 0.85893 1.02192 1.49180 1.05092 1.04858 1.50453 1.19807 0.77345 0.89450 0.99427 1.21247 1.09662 1.19507 1.06442 0.91250 1.24944 0.94945 0.96991 0.97160 1.69917 1.12231 1.36598 1.34541 0.86314 0.77251 0.80651 0.82223 1.20283 1.20967 1.19690 1.77410 0.88604 1.19880 1.26572 0.92990 0.92816 0.92438 0.91175 0.88516 0.90366 0.91354 0.91833 0.91725 0.91574 0.90550 0.81961 0.91589 0.73865 0.82103 0.81213 0.93541 0.92346 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.69 37.16 0.36 -0.81 16 2 C -0.12 -1.17 3.89 -26.73 -0.10 -1.28 16 3 C 0.14 1.25 3.02 -67.62 -0.20 1.04 16 4 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.13 -0.93 4.84 -26.63 -0.13 -1.06 16 6 C -0.12 -0.80 5.89 -26.69 -0.16 -0.95 16 7 C -0.13 -1.00 6.08 -26.61 -0.16 -1.16 16 8 C 0.04 0.37 6.28 -3.71 -0.02 0.35 16 9 N -0.57 -5.98 2.97 -165.78 -0.49 -6.47 16 10 C 0.52 6.52 7.61 -11.64 -0.09 6.43 16 11 O -0.51 -7.04 12.03 5.49 0.07 -6.97 16 12 C 0.51 7.31 7.78 -11.64 -0.09 7.22 16 13 O -0.49 -7.17 10.14 5.47 0.06 -7.11 16 14 N -0.59 -9.44 5.43 -11.58 -0.06 -9.50 16 15 C 0.25 4.81 8.10 -154.55 -1.25 3.56 16 16 C -0.28 -5.21 9.60 -39.82 -0.38 -5.60 16 17 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 18 N -0.31 -7.06 3.67 -62.56 -0.23 -7.29 16 19 C 0.26 6.37 6.26 -5.19 -0.03 6.34 16 20 C -0.53 -14.55 9.24 -34.44 -0.32 -14.87 16 21 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 24 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 N -0.29 -6.62 12.42 31.41 0.39 -6.23 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.34 6.31 -51.92 -0.33 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.78 7.28 -51.93 -0.38 0.40 16 33 H 0.10 1.12 6.18 -51.93 -0.32 0.80 16 34 H 0.08 0.45 6.64 -51.93 -0.35 0.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.16 1.81 3.70 -57.21 -0.21 1.59 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.42 6.21 8.31 -40.82 -0.34 5.87 16 43 H 0.16 2.70 5.91 -52.49 -0.31 2.39 16 44 H 0.17 2.54 8.06 -52.48 -0.42 2.12 16 45 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 46 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -29.95 373.97 -8.65 -38.60 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.85 Total: 5.76 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.88 Total: 1.63 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.34 Total: -53.78 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.12 Total: -14.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.95 -8.65 -38.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123841478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.844 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds