Wall clock time and date at job start Tue Mar 31 2020 18:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47397 * 2 1 4 4 H 1.09003 * 109.58265 * 60.65098 * 3 2 1 5 5 C 1.53163 * 109.59151 * 300.21901 * 3 2 1 6 6 C 1.53036 * 109.33140 * 185.56653 * 5 3 2 7 7 C 1.53050 * 109.52468 * 61.36974 * 6 5 3 8 8 C 1.53194 * 109.31195 * 298.64381 * 7 6 5 9 9 N 1.46922 * 109.58884 * 180.93308 * 3 2 1 10 10 C 1.34776 * 120.63403 * 353.37459 * 9 3 2 11 11 O 1.21363 * 119.99880 * 355.04486 * 10 9 3 12 12 C 1.49342 * 120.00288 * 175.03476 * 10 9 3 13 13 O 1.21380 * 119.99670 * 6.30261 * 12 10 9 14 14 N 1.34777 * 119.99709 * 186.29680 * 12 10 9 15 15 C 1.39931 * 119.99455 * 180.02562 * 14 12 10 16 16 C 1.40457 * 125.98511 * 359.71804 * 15 14 12 17 17 C 1.35214 * 107.87036 * 179.82647 * 16 15 14 18 18 N 1.34990 * 107.87280 * 0.42985 * 17 16 15 19 19 C 1.46498 * 125.96629 * 179.72533 * 18 17 16 20 20 C 1.50705 * 109.46776 * 124.97964 * 19 18 17 21 21 H 1.08000 * 119.99874 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99943 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99768 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00003 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47592 * 89.99677 * 24 22 20 26 26 H 1.48497 * 109.47245 * 209.99786 * 24 22 20 27 27 H 1.48502 * 109.47194 * 329.99284 * 24 22 20 28 28 N 1.31273 * 125.98020 * 180.02562 * 15 14 12 29 29 H 1.08995 * 109.47640 * 295.08724 * 1 2 3 30 30 H 1.09007 * 109.46816 * 55.08677 * 1 2 3 31 31 H 1.08998 * 109.47316 * 175.08178 * 1 2 3 32 32 H 1.08999 * 109.47384 * 240.00096 * 2 1 3 33 33 H 1.09000 * 109.46812 * 120.00006 * 2 1 3 34 34 H 1.08999 * 109.47858 * 65.61576 * 5 3 2 35 35 H 1.08998 * 109.50144 * 305.53211 * 5 3 2 36 36 H 1.09002 * 109.46038 * 301.35940 * 6 5 3 37 37 H 1.09000 * 109.46485 * 181.38089 * 6 5 3 38 38 H 1.09004 * 109.49715 * 58.59513 * 7 6 5 39 39 H 1.08998 * 109.49860 * 178.68832 * 7 6 5 40 40 H 1.09002 * 109.58486 * 174.42271 * 8 7 6 41 41 H 1.08994 * 109.58497 * 294.70292 * 8 7 6 42 42 H 0.96999 * 120.00494 * 0.02562 * 14 12 10 43 43 H 1.08000 * 126.06399 * 359.96041 * 16 15 14 44 44 H 1.08007 * 126.06286 * 180.13399 * 17 16 15 45 45 H 1.09008 * 109.47138 * 244.97402 * 19 18 17 46 46 H 1.09000 * 109.47947 * 4.97614 * 19 18 17 47 47 H 0.97002 * 119.99735 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6873 1.9547 0.8952 5 6 1.5265 2.1688 -1.2469 6 6 2.1509 3.5644 -1.3133 7 6 3.6726 3.4394 -1.4196 8 6 4.2107 2.7274 -0.1745 9 7 3.5091 1.4455 -0.0225 10 6 4.2000 0.2942 0.0944 11 8 3.6136 -0.7463 0.3098 12 6 5.6873 0.2989 -0.0412 13 8 6.2842 1.3509 -0.1423 14 7 6.3666 -0.8651 -0.0513 15 6 7.7602 -0.8607 -0.1778 16 6 8.5735 0.2771 -0.3075 17 6 9.8569 -0.1386 -0.3995 18 7 9.8608 -1.4872 -0.3408 19 6 11.0441 -2.3480 -0.4104 20 6 11.0803 -3.2506 0.7959 21 1 10.3002 -3.1888 1.5402 22 6 12.1101 -4.1545 0.9500 23 7 13.0604 -4.2293 0.0439 24 14 12.1554 -5.2727 2.4456 25 1 11.4269 -6.5313 2.1450 26 1 13.5662 -5.5866 2.7864 27 1 11.5091 -4.5890 3.5946 28 7 8.5358 -1.9196 -0.2018 29 1 -0.3634 0.4357 0.9306 30 1 -0.3633 0.5882 -0.8428 31 1 -0.3634 -1.0238 -0.0881 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 0.4414 2.2578 -1.1946 35 1 1.8032 1.6037 -2.1369 36 1 1.8943 4.1203 -0.4116 37 1 1.7681 4.0923 -2.1867 38 1 3.9291 2.8623 -2.3081 39 1 4.1151 4.4330 -1.4904 40 1 5.2796 2.5476 -0.2897 41 1 4.0372 3.3478 0.7047 42 1 5.8896 -1.7059 0.0292 43 1 8.2342 1.3022 -0.3278 44 1 10.7245 0.4957 -0.5063 45 1 11.0004 -2.9534 -1.3159 46 1 11.9422 -1.7305 -0.4293 47 1 13.7846 -4.8655 0.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123841478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:49 Heat of formation + Delta-G solvation = 22.626596 kcal Electronic energy + Delta-G solvation = -28855.760417 eV Core-core repulsion = 24848.006508 eV Total energy + Delta-G solvation = -4007.753909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.64270 -41.88716 -40.19936 -38.69288 -36.54443 -35.35843 -34.99586 -33.83497 -32.84008 -31.02509 -30.29861 -28.91428 -27.54886 -25.51786 -25.15627 -24.38168 -22.95918 -22.13450 -21.85654 -21.25709 -20.53262 -18.72845 -18.64987 -18.24755 -17.73526 -17.24336 -16.93725 -16.65509 -16.20910 -15.98216 -15.86867 -15.66619 -15.40176 -15.02900 -14.61636 -14.53653 -14.37308 -14.24342 -14.04564 -13.87067 -13.69819 -13.48018 -13.28011 -12.98283 -12.80130 -12.68610 -12.44193 -12.31571 -12.13784 -11.90115 -11.83189 -11.65552 -11.58239 -11.54216 -11.41960 -11.00009 -10.73224 -9.86791 -9.82306 -9.73609 -9.21744 -8.34468 -6.47841 0.03216 0.84319 1.14805 1.37397 1.38867 1.49568 1.73892 1.80674 2.25054 2.32544 2.47248 2.97927 3.06627 3.71570 3.82860 3.90947 3.97267 4.11094 4.20200 4.26461 4.28360 4.41496 4.52836 4.56002 4.66772 4.74197 4.84499 4.85645 4.88429 4.90301 4.95066 5.00979 5.02931 5.13168 5.15959 5.25973 5.30639 5.32483 5.40685 5.47650 5.55610 5.65533 5.75637 5.81475 5.91708 6.10274 6.25238 6.57110 6.63947 6.78687 6.96921 7.22084 8.73380 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002329 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.780663 B =12016.941115 C =12972.382960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.139 3.861 4 H 0.092 0.908 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.038 3.962 9 N -0.566 5.566 10 C 0.516 3.484 11 O -0.528 6.528 12 C 0.517 3.483 13 O -0.492 6.492 14 N -0.598 5.598 15 C 0.257 3.743 16 C -0.285 4.285 17 C 0.060 3.940 18 N -0.340 5.340 19 C 0.271 3.729 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.273 1.273 28 N -0.342 5.342 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.427 0.573 43 H 0.180 0.820 44 H 0.207 0.793 45 H 0.022 0.978 46 H 0.064 0.936 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.343 18.044 -2.213 29.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.110 0.890 5 C -0.165 4.165 6 C -0.157 4.157 7 C -0.167 4.167 8 C -0.082 4.082 9 N -0.298 5.298 10 C 0.297 3.703 11 O -0.406 6.406 12 C 0.299 3.701 13 O -0.367 6.367 14 N -0.247 5.247 15 C 0.003 3.997 16 C -0.315 4.315 17 C -0.089 4.089 18 N -0.122 5.122 19 C 0.153 3.847 20 C -0.587 4.587 21 H 0.069 0.931 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.198 1.198 28 N -0.174 5.174 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.100 0.900 42 H 0.265 0.735 43 H 0.197 0.803 44 H 0.224 0.776 45 H 0.040 0.960 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.944 16.831 -2.181 28.538 hybrid contribution 0.208 -0.592 0.535 0.825 sum -22.735 16.238 -1.646 27.987 Atomic orbital electron populations 1.21919 0.94447 1.02144 1.02589 1.22019 0.96001 0.94331 1.03264 1.21716 0.76586 0.97897 0.99993 0.89029 1.22038 1.01828 0.96303 0.96359 1.21579 0.94593 0.96263 1.03300 1.21877 0.96648 1.01301 0.96917 1.23465 1.02944 0.82509 0.99298 1.48140 1.07499 1.06453 1.67744 1.19499 0.86359 0.84993 0.79406 1.90833 1.68668 1.32609 1.48463 1.20651 0.89394 0.83050 0.76969 1.90223 1.69374 1.29183 1.47952 1.42169 1.02648 1.10870 1.68971 1.19346 0.84497 0.93461 1.02414 1.21767 0.90469 0.99982 1.19303 1.23271 1.00598 0.84735 1.00269 1.48911 1.04583 1.05848 1.52885 1.19383 0.78609 0.89361 0.97366 1.21398 1.09445 1.20742 1.07068 0.93056 1.25707 0.94493 0.98106 0.99789 1.69986 1.12654 1.37237 1.35892 0.85378 0.77780 0.78644 0.78806 1.19986 1.19566 1.19784 1.77320 0.89119 1.21757 1.29157 0.91914 0.91335 0.92811 0.93227 0.90849 0.88326 0.92538 0.90642 0.90412 0.92881 0.89032 0.83717 0.90032 0.73497 0.80326 0.77602 0.95972 0.91872 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.69 71.98 0.70 -1.28 16 2 C -0.12 -2.19 3.89 30.59 0.12 -2.07 16 3 C 0.14 2.16 3.02 44.96 0.14 2.30 16 4 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 5 C -0.13 -1.46 4.84 30.66 0.15 -1.31 16 6 C -0.12 -1.15 5.89 30.62 0.18 -0.97 16 7 C -0.13 -1.65 6.08 30.68 0.19 -1.46 16 8 C 0.04 0.63 6.28 86.36 0.54 1.17 16 9 N -0.57 -11.08 2.97 -796.78 -2.37 -13.45 16 10 C 0.52 12.96 7.61 87.24 0.66 13.62 16 11 O -0.53 -14.80 12.03 -3.29 -0.04 -14.84 16 12 C 0.52 14.61 7.78 87.24 0.68 15.29 16 13 O -0.49 -13.97 10.14 -3.34 -0.03 -14.01 16 14 N -0.60 -19.33 5.43 -308.90 -1.68 -21.01 16 15 C 0.26 10.08 8.10 133.40 1.08 11.16 16 16 C -0.28 -10.22 9.60 22.11 0.21 -10.01 16 17 C 0.06 2.21 11.43 83.51 0.95 3.16 16 18 N -0.34 -15.61 3.67 -351.83 -1.29 -16.90 16 19 C 0.27 13.87 6.26 85.63 0.54 14.40 16 20 C -0.55 -30.84 9.24 25.60 0.24 -30.61 16 21 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 22 C 0.02 1.08 5.46 84.65 0.46 1.54 16 23 N -0.92 -51.81 13.29 21.45 0.28 -51.52 16 24 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 N -0.34 -15.93 12.42 -54.54 -0.68 -16.60 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.68 6.31 -2.38 -0.02 0.67 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.11 7.28 -2.39 -0.02 1.09 16 33 H 0.07 1.71 6.18 -2.39 -0.01 1.69 16 34 H 0.10 0.77 6.64 -2.39 -0.02 0.75 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.15 3.02 3.70 -86.06 -0.32 2.71 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.43 13.01 8.31 -92.71 -0.77 12.24 16 43 H 0.18 5.72 5.91 -2.91 -0.02 5.70 16 44 H 0.21 5.78 8.06 -2.91 -0.02 5.76 16 45 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.06 3.11 8.07 -2.39 -0.02 3.09 16 47 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -65.65 373.97 2.98 -62.67 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.08 Total: 24.90 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.83 Total: 14.94 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -5.73 Total: -119.49 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.07 Total: -28.85 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.65 2.98 -62.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123841478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.297 kcal (2) G-P(sol) polarization free energy of solvation -65.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds