Wall clock time and date at job start Tue Mar 31 2020 18:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46943 * 2 1 4 4 C 1.53003 * 109.46879 * 119.99929 * 2 1 3 5 5 C 1.53000 * 109.47403 * 65.00024 * 4 2 1 6 6 N 1.46496 * 109.47094 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00103 * 270.27719 * 6 5 4 8 8 C 1.50707 * 109.47117 * 269.72346 * 7 6 5 9 9 H 1.07997 * 119.99384 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99940 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00226 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99596 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47255 * 60.00118 * 12 10 8 14 14 H 1.48502 * 109.47107 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47202 * 299.99772 * 12 10 8 16 16 C 1.34783 * 120.00144 * 89.99678 * 6 5 4 17 17 O 1.21581 * 119.99794 * 0.02562 * 16 6 5 18 18 N 1.34774 * 120.00127 * 179.97438 * 16 6 5 19 19 C 1.39366 * 120.00214 * 174.86686 * 18 16 6 20 20 C 1.39406 * 119.63517 * 185.06701 * 19 18 16 21 21 C 1.38302 * 119.30094 * 179.76930 * 20 19 18 22 22 C 1.38798 * 118.56589 * 0.49416 * 21 20 19 23 23 C 1.39141 * 119.21489 * 359.74987 * 22 21 20 24 24 C 1.48150 * 119.68631 * 179.97438 * 23 22 21 25 25 N 1.34772 * 120.00291 * 180.02562 * 24 23 22 26 26 O 1.21523 * 119.99927 * 0.02562 * 24 23 22 27 27 N 1.32002 * 119.62804 * 5.33730 * 19 18 16 28 28 H 1.09007 * 109.46777 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47331 * 300.00110 * 1 2 3 30 30 H 1.08994 * 109.46721 * 60.00469 * 1 2 3 31 31 H 1.08995 * 109.46853 * 239.99308 * 2 1 3 32 32 H 1.09006 * 109.46941 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47001 * 299.99626 * 3 2 1 34 34 H 1.09003 * 109.47620 * 59.99938 * 3 2 1 35 35 H 1.09011 * 109.46911 * 304.99658 * 4 2 1 36 36 H 1.08999 * 109.46790 * 185.00490 * 4 2 1 37 37 H 1.08997 * 109.47206 * 60.00074 * 5 4 2 38 38 H 1.09001 * 109.46801 * 300.00104 * 5 4 2 39 39 H 1.09003 * 109.47237 * 29.71943 * 7 6 5 40 40 H 1.09003 * 109.47291 * 149.72249 * 7 6 5 41 41 H 0.97000 * 119.99859 * 180.02562 * 11 10 8 42 42 H 0.96998 * 119.99914 * 354.87182 * 18 16 6 43 43 H 1.08005 * 120.34451 * 0.02562 * 20 19 18 44 44 H 1.07994 * 120.71683 * 180.24295 * 21 20 19 45 45 H 1.08000 * 120.39419 * 179.77051 * 22 21 20 46 46 H 0.97006 * 119.99877 * 359.97438 * 25 24 23 47 47 H 0.97003 * 120.00138 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1881 6 7 2.1231 -2.8859 2.3846 7 6 3.4537 -3.4986 2.3854 8 6 3.3490 -4.9277 1.9183 9 1 2.3874 -5.3381 1.6476 10 6 4.4808 -5.7106 1.8357 11 7 5.6518 -5.2106 2.1650 12 14 4.3510 -7.4817 1.2561 13 1 3.7922 -7.5127 -0.1194 14 1 5.6999 -8.1029 1.2571 15 1 3.4579 -8.2376 2.1705 16 6 1.3498 -2.9524 3.4865 17 8 0.2474 -2.4399 3.4874 18 7 1.7984 -3.5880 4.5871 19 6 1.0461 -3.5655 5.7601 20 6 1.5647 -4.1338 6.9226 21 6 0.8142 -4.1034 8.0839 22 6 -0.4415 -3.5132 8.0474 23 6 -0.9016 -2.9689 6.8523 24 6 -2.2405 -2.3368 6.8014 25 7 -2.6927 -1.8082 5.6471 26 8 -2.9311 -2.2951 7.8004 27 7 -0.1518 -3.0111 5.7565 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6054 -0.2616 2.1371 36 1 3.1263 -0.6443 1.2952 37 1 2.0699 -2.6550 0.3004 38 1 0.5490 -2.2723 1.1421 39 1 4.1095 -2.9442 1.7141 40 1 3.8638 -3.4755 3.3951 41 1 6.4481 -5.7614 2.1065 42 1 2.6448 -4.0610 4.5629 43 1 2.5440 -4.5894 6.9174 44 1 1.1953 -4.5333 8.9984 45 1 -1.0540 -3.4764 8.9361 46 1 -2.1413 -1.8412 4.8497 47 1 -3.5695 -1.3946 5.6137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125681388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:26 Heat of formation + Delta-G solvation = -34.109956 kcal Electronic energy + Delta-G solvation = -29236.451725 eV Core-core repulsion = 25226.237535 eV Total energy + Delta-G solvation = -4010.214191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.74923 -39.54834 -38.47864 -36.69885 -34.81211 -34.42197 -33.69630 -32.65790 -32.11716 -30.23387 -28.85788 -27.06019 -26.98530 -24.91428 -23.87587 -23.21549 -22.24173 -20.96768 -19.81130 -19.40028 -18.35980 -17.28402 -16.80103 -16.70399 -16.47551 -15.91355 -15.23982 -15.14727 -15.02011 -14.83454 -14.62565 -14.50709 -14.00522 -13.82253 -13.34052 -13.31321 -13.11806 -13.04430 -12.48020 -12.36435 -12.09729 -12.09027 -11.78520 -11.51567 -11.14199 -11.01018 -10.86947 -10.78074 -10.55192 -10.46170 -10.44618 -10.30017 -10.07378 -9.85292 -9.79668 -9.76143 -9.56933 -8.91067 -8.67705 -8.13357 -7.67958 -6.30355 -4.39784 0.77011 1.40144 2.82646 2.99833 3.16684 3.22402 3.25614 3.52707 3.73512 4.16169 4.18817 4.29525 4.61766 4.89400 5.02249 5.05561 5.08735 5.11841 5.13509 5.15609 5.38754 5.54880 5.61759 5.71594 5.81791 5.88812 5.92285 5.97289 6.00424 6.09844 6.19696 6.23511 6.31191 6.37921 6.39482 6.57952 6.62398 6.69001 6.80754 6.95741 6.99851 7.16592 7.44195 7.55236 7.65130 7.90757 8.01423 8.33065 8.49396 8.73126 9.20228 9.31232 10.75269 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.004490 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.237593 B = 6235.117578 C = 9207.720910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.138 3.862 6 N -0.609 5.609 7 C 0.238 3.762 8 C -0.545 4.545 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.276 1.276 16 C 0.701 3.299 17 O -0.564 6.564 18 N -0.661 5.661 19 C 0.392 3.608 20 C -0.188 4.188 21 C -0.053 4.053 22 C -0.158 4.158 23 C 0.102 3.898 24 C 0.582 3.418 25 N -0.832 5.832 26 O -0.549 6.549 27 N -0.451 5.451 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.427 0.573 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.422 0.578 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 6.638 3.684 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C 0.015 3.985 6 N -0.343 5.343 7 C 0.117 3.883 8 C -0.583 4.583 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.725 3.275 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.403 3.597 17 O -0.440 6.440 18 N -0.311 5.311 19 C 0.156 3.844 20 C -0.213 4.213 21 C -0.079 4.079 22 C -0.182 4.182 23 C -0.038 4.038 24 C 0.366 3.634 25 N -0.395 5.395 26 O -0.427 6.427 27 N -0.170 5.170 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.268 0.732 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.255 0.745 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.632 7.301 3.464 11.115 hybrid contribution 1.035 -1.588 -0.124 1.900 sum -6.597 5.713 3.341 9.344 Atomic orbital electron populations 1.21870 0.95326 1.02056 1.01100 1.21043 0.95851 0.95869 0.98498 1.21822 1.00883 0.96254 1.01252 1.22025 1.00996 0.96095 0.97620 1.21247 0.99809 0.90570 0.86922 1.47455 1.18915 1.56638 1.11314 1.19354 0.77920 0.93149 0.97829 1.21508 0.94221 0.96288 1.46319 0.92004 1.24945 0.95041 0.98829 0.94825 1.69905 0.98498 1.37060 1.47267 0.86563 0.77263 0.84131 0.79588 1.20060 1.21097 1.20095 1.15858 0.84147 0.79491 0.80237 1.90850 1.19430 1.51389 1.82308 1.43077 1.24803 1.54640 1.08580 1.18187 0.88283 0.92011 0.85898 1.21737 1.02634 1.04579 0.92310 1.21305 0.93033 0.95726 0.97874 1.21898 0.97102 1.00191 0.98975 1.20880 0.94503 0.98530 0.89879 1.17883 0.84871 0.77392 0.83278 1.43749 1.22181 1.60123 1.13417 1.90788 1.57657 1.59307 1.34938 1.67559 1.04392 1.17219 1.27793 0.92227 0.92764 0.93385 0.91221 0.92814 0.93095 0.92933 0.91928 0.91965 0.90582 0.90649 0.94133 0.95394 0.92321 0.73207 0.83949 0.83937 0.83882 0.74533 0.77000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.95 37.16 0.33 -1.39 16 2 C -0.09 -1.16 2.92 -90.62 -0.26 -1.42 16 3 C -0.14 -1.59 9.19 37.15 0.34 -1.25 16 4 C -0.13 -1.92 5.01 -26.73 -0.13 -2.06 16 5 C 0.14 2.38 5.16 -4.04 -0.02 2.36 16 6 N -0.61 -11.95 2.46 -180.80 -0.44 -12.39 16 7 C 0.24 5.20 4.88 -5.19 -0.03 5.17 16 8 C -0.54 -13.22 9.39 -34.44 -0.32 -13.55 16 9 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 10 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -22.99 13.29 55.43 0.74 -22.25 16 12 Si 0.90 19.63 29.54 -169.99 -5.02 14.61 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 16 C 0.70 13.99 8.24 -86.91 -0.72 13.28 16 17 O -0.56 -11.75 14.18 5.29 0.08 -11.68 16 18 N -0.66 -11.96 5.22 -15.80 -0.08 -12.04 16 19 C 0.39 6.55 7.42 -154.90 -1.15 5.40 16 20 C -0.19 -2.48 9.94 -39.12 -0.39 -2.87 16 21 C -0.05 -0.61 10.16 -39.35 -0.40 -1.01 16 22 C -0.16 -2.10 9.63 -39.04 -0.38 -2.48 16 23 C 0.10 1.60 6.75 -83.03 -0.56 1.04 16 24 C 0.58 9.05 8.08 -12.19 -0.10 8.95 16 25 N -0.83 -10.84 8.86 30.60 0.27 -10.57 16 26 O -0.55 -9.51 17.15 5.35 0.09 -9.42 16 27 N -0.45 -7.84 7.06 -8.93 -0.06 -7.90 16 28 H 0.06 0.74 6.56 -51.92 -0.34 0.40 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 38 H 0.08 1.31 5.84 -51.93 -0.30 1.00 16 39 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.03 0.62 6.46 -51.93 -0.34 0.29 16 41 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.43 7.56 6.51 -40.82 -0.27 7.30 16 43 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 44 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.14 1.71 7.63 -52.49 -0.40 1.31 16 46 H 0.42 5.93 8.16 -40.82 -0.33 5.60 16 47 H 0.40 4.14 8.93 -40.82 -0.36 3.78 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -29.10 393.85 -9.34 -38.44 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -6.95 Total: 15.53 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -3.88 Total: 11.74 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: 0.42 Total: -65.16 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.10 -9.34 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125681388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.327 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds