Wall clock time and date at job start Tue Mar 31 2020 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46943 * 2 1 4 4 C 1.53003 * 109.46879 * 119.99929 * 2 1 3 5 5 C 1.53000 * 109.47403 * 65.00024 * 4 2 1 6 6 N 1.46496 * 109.47094 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00103 * 270.27719 * 6 5 4 8 8 C 1.50707 * 109.47117 * 269.72346 * 7 6 5 9 9 H 1.07997 * 119.99384 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99940 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00226 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99596 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47255 * 60.00118 * 12 10 8 14 14 H 1.48502 * 109.47107 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47202 * 299.99772 * 12 10 8 16 16 C 1.34783 * 120.00144 * 89.99678 * 6 5 4 17 17 O 1.21581 * 119.99794 * 0.02562 * 16 6 5 18 18 N 1.34774 * 120.00127 * 179.97438 * 16 6 5 19 19 C 1.39366 * 120.00214 * 174.86686 * 18 16 6 20 20 C 1.39406 * 119.63517 * 185.06701 * 19 18 16 21 21 C 1.38302 * 119.30094 * 179.76930 * 20 19 18 22 22 C 1.38798 * 118.56589 * 0.49416 * 21 20 19 23 23 C 1.39141 * 119.21489 * 359.74987 * 22 21 20 24 24 C 1.48150 * 119.68631 * 179.97438 * 23 22 21 25 25 N 1.34772 * 120.00291 * 180.02562 * 24 23 22 26 26 O 1.21523 * 119.99927 * 0.02562 * 24 23 22 27 27 N 1.32002 * 119.62804 * 5.33730 * 19 18 16 28 28 H 1.09007 * 109.46777 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47331 * 300.00110 * 1 2 3 30 30 H 1.08994 * 109.46721 * 60.00469 * 1 2 3 31 31 H 1.08995 * 109.46853 * 239.99308 * 2 1 3 32 32 H 1.09006 * 109.46941 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47001 * 299.99626 * 3 2 1 34 34 H 1.09003 * 109.47620 * 59.99938 * 3 2 1 35 35 H 1.09011 * 109.46911 * 304.99658 * 4 2 1 36 36 H 1.08999 * 109.46790 * 185.00490 * 4 2 1 37 37 H 1.08997 * 109.47206 * 60.00074 * 5 4 2 38 38 H 1.09001 * 109.46801 * 300.00104 * 5 4 2 39 39 H 1.09003 * 109.47237 * 29.71943 * 7 6 5 40 40 H 1.09003 * 109.47291 * 149.72249 * 7 6 5 41 41 H 0.97000 * 119.99859 * 180.02562 * 11 10 8 42 42 H 0.96998 * 119.99914 * 354.87182 * 18 16 6 43 43 H 1.08005 * 120.34451 * 0.02562 * 20 19 18 44 44 H 1.07994 * 120.71683 * 180.24295 * 21 20 19 45 45 H 1.08000 * 120.39419 * 179.77051 * 22 21 20 46 46 H 0.97006 * 119.99877 * 359.97438 * 25 24 23 47 47 H 0.97003 * 120.00138 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1881 6 7 2.1231 -2.8859 2.3846 7 6 3.4537 -3.4986 2.3854 8 6 3.3490 -4.9277 1.9183 9 1 2.3874 -5.3381 1.6476 10 6 4.4808 -5.7106 1.8357 11 7 5.6518 -5.2106 2.1650 12 14 4.3510 -7.4817 1.2561 13 1 3.7922 -7.5127 -0.1194 14 1 5.6999 -8.1029 1.2571 15 1 3.4579 -8.2376 2.1705 16 6 1.3498 -2.9524 3.4865 17 8 0.2474 -2.4399 3.4874 18 7 1.7984 -3.5880 4.5871 19 6 1.0461 -3.5655 5.7601 20 6 1.5647 -4.1338 6.9226 21 6 0.8142 -4.1034 8.0839 22 6 -0.4415 -3.5132 8.0474 23 6 -0.9016 -2.9689 6.8523 24 6 -2.2405 -2.3368 6.8014 25 7 -2.6927 -1.8082 5.6471 26 8 -2.9311 -2.2951 7.8004 27 7 -0.1518 -3.0111 5.7565 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6054 -0.2616 2.1371 36 1 3.1263 -0.6443 1.2952 37 1 2.0699 -2.6550 0.3004 38 1 0.5490 -2.2723 1.1421 39 1 4.1095 -2.9442 1.7141 40 1 3.8638 -3.4755 3.3951 41 1 6.4481 -5.7614 2.1065 42 1 2.6448 -4.0610 4.5629 43 1 2.5440 -4.5894 6.9174 44 1 1.1953 -4.5333 8.9984 45 1 -1.0540 -3.4764 8.9361 46 1 -2.1413 -1.8412 4.8497 47 1 -3.5695 -1.3946 5.6137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125681388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:25 Heat of formation + Delta-G solvation = -51.456026 kcal Electronic energy + Delta-G solvation = -29237.203908 eV Core-core repulsion = 25226.237535 eV Total energy + Delta-G solvation = -4010.966373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.99848 -40.91030 -39.72567 -37.89741 -36.36644 -35.74897 -34.84416 -34.47174 -33.22191 -31.44620 -30.26293 -28.68265 -27.97296 -26.06501 -25.10456 -24.98146 -23.47732 -22.15647 -20.93134 -20.75980 -19.60265 -18.82041 -18.38581 -18.04225 -17.84886 -16.95580 -16.61801 -16.56399 -16.26639 -16.15467 -16.02473 -15.88563 -15.15053 -15.02320 -14.75679 -14.46620 -14.37555 -14.19051 -14.06250 -13.73926 -13.45388 -13.09705 -13.08070 -12.84620 -12.73543 -12.59204 -12.24240 -12.05120 -11.96760 -11.77225 -11.73517 -11.56182 -11.49413 -11.36578 -11.16689 -10.88788 -10.71323 -10.61609 -10.18218 -9.53878 -9.13279 -8.20192 -6.36060 -0.34598 0.31362 1.42688 1.45202 1.51412 1.64191 1.65804 2.28036 2.39143 2.42797 2.86708 2.99049 3.09393 3.38049 3.85175 3.96795 4.00800 4.05072 4.11676 4.12163 4.28396 4.37717 4.51113 4.61395 4.74192 4.79270 4.82455 4.90549 4.92450 4.99224 5.06009 5.14634 5.16054 5.17136 5.19403 5.31197 5.35629 5.47998 5.52068 5.60642 5.70393 5.75292 5.85997 6.03195 6.04083 6.26901 6.62732 6.77651 7.07908 7.23515 7.37673 7.70440 8.83553 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.004490 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.237593 B = 6235.117578 C = 9207.720910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.116 4.116 5 C 0.137 3.863 6 N -0.613 5.613 7 C 0.254 3.746 8 C -0.549 4.549 9 H 0.049 0.951 10 C 0.030 3.970 11 N -0.914 5.914 12 Si 0.951 3.049 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.273 1.273 16 C 0.695 3.305 17 O -0.578 6.578 18 N -0.663 5.663 19 C 0.359 3.641 20 C -0.178 4.178 21 C -0.037 4.037 22 C -0.149 4.149 23 C 0.075 3.925 24 C 0.579 3.421 25 N -0.819 5.819 26 O -0.573 6.573 27 N -0.476 5.476 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.269 0.731 42 H 0.426 0.574 43 H 0.166 0.834 44 H 0.190 0.810 45 H 0.158 0.842 46 H 0.419 0.581 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 6.180 4.412 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.155 4.155 5 C 0.014 3.986 6 N -0.347 5.347 7 C 0.133 3.867 8 C -0.588 4.588 9 H 0.067 0.933 10 C -0.171 4.171 11 N -0.553 5.553 12 Si 0.777 3.223 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.199 1.199 16 C 0.396 3.604 17 O -0.455 6.455 18 N -0.313 5.313 19 C 0.124 3.876 20 C -0.202 4.202 21 C -0.063 4.063 22 C -0.172 4.172 23 C -0.064 4.064 24 C 0.363 3.637 25 N -0.382 5.382 26 O -0.453 6.453 27 N -0.195 5.195 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.267 0.733 43 H 0.184 0.816 44 H 0.207 0.793 45 H 0.176 0.824 46 H 0.251 0.749 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.589 6.858 4.199 11.058 hybrid contribution 0.974 -1.441 -0.288 1.763 sum -6.615 5.418 3.911 9.403 Atomic orbital electron populations 1.21831 0.94753 1.01604 1.01788 1.21044 0.96297 0.96602 0.97055 1.21791 1.00874 0.95142 1.02068 1.21893 1.00301 0.94729 0.98533 1.21350 0.99521 0.91718 0.86001 1.47469 1.18213 1.56920 1.12120 1.19009 0.78725 0.91982 0.97027 1.21630 0.93649 0.97374 1.46122 0.93251 1.25536 0.94772 1.01898 0.94923 1.69980 0.98951 1.38203 1.48119 0.85710 0.77239 0.80387 0.78919 1.20188 1.20656 1.19868 1.16041 0.84057 0.79634 0.80644 1.90825 1.19889 1.52139 1.82670 1.42986 1.24945 1.54622 1.08769 1.18534 0.88669 0.93968 0.86426 1.22065 1.03569 1.03113 0.91444 1.21805 0.91661 0.94034 0.98796 1.22211 0.97865 0.98701 0.98433 1.21037 0.94661 1.00098 0.90611 1.18010 0.84970 0.77369 0.83397 1.43659 1.22595 1.59299 1.12626 1.90766 1.58297 1.60572 1.35619 1.67375 1.05087 1.17980 1.29023 0.93255 0.93367 0.91365 0.90730 0.92843 0.91283 0.93109 0.93357 0.92791 0.90964 0.90909 0.95760 0.95621 0.92203 0.73296 0.81614 0.79300 0.82411 0.74915 0.75603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.95 71.99 0.64 -2.62 16 2 C -0.09 -2.20 2.92 -10.79 -0.03 -2.23 16 3 C -0.14 -2.93 9.19 71.98 0.66 -2.27 16 4 C -0.12 -3.54 5.01 30.60 0.15 -3.38 16 5 C 0.14 4.85 5.16 86.38 0.45 5.29 16 6 N -0.61 -24.71 2.46 -844.20 -2.07 -26.78 16 7 C 0.25 11.34 4.88 85.64 0.42 11.76 16 8 C -0.55 -26.89 9.39 25.60 0.24 -26.65 16 9 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 10 C 0.03 1.48 5.46 84.65 0.46 1.95 16 11 N -0.91 -47.14 13.29 21.45 0.28 -46.85 16 12 Si 0.95 39.89 29.54 68.60 2.03 41.92 16 13 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 C 0.70 28.40 8.24 179.05 1.47 29.88 16 17 O -0.58 -24.75 14.18 -3.97 -0.06 -24.81 16 18 N -0.66 -24.26 5.22 -322.17 -1.68 -25.94 16 19 C 0.36 11.85 7.42 133.12 0.99 12.84 16 20 C -0.18 -4.30 9.94 22.57 0.22 -4.08 16 21 C -0.04 -0.73 10.16 22.42 0.23 -0.50 16 22 C -0.15 -3.63 9.63 22.62 0.22 -3.41 16 23 C 0.07 2.31 6.75 41.84 0.28 2.59 16 24 C 0.58 17.91 8.08 86.88 0.70 18.61 16 25 N -0.82 -21.49 8.86 -175.39 -1.55 -23.04 16 26 O -0.57 -19.61 17.15 -3.79 -0.06 -19.68 16 27 N -0.48 -16.58 7.06 -182.17 -1.29 -17.87 16 28 H 0.05 1.22 6.56 -2.38 -0.02 1.20 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 38 H 0.07 2.60 5.84 -2.39 -0.01 2.59 16 39 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 40 H 0.03 1.17 6.46 -2.39 -0.02 1.15 16 41 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 42 H 0.43 15.26 6.51 -92.71 -0.60 14.66 16 43 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.16 3.37 7.63 -2.91 -0.02 3.35 16 46 H 0.42 12.01 8.16 -92.70 -0.76 11.26 16 47 H 0.41 8.49 8.93 -92.71 -0.83 7.66 16 Total: -1.00 -62.84 393.85 1.54 -61.31 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -1.17 Total: 43.97 kcal Atomic # 6 Polarization: 30.66 SS G_CDS: 7.11 Total: 37.77 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -6.31 Total: -140.48 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.12 Total: -44.49 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -62.84 1.54 -61.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125681388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -62.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds