Wall clock time and date at job start Tue Mar 31 2020 19:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 H 1.09005 * 109.46851 * 305.00335 * 3 2 1 5 5 C 1.50696 * 109.47450 * 185.00064 * 3 2 1 6 6 H 1.08001 * 119.99896 * 239.99662 * 5 3 2 7 7 C 1.37879 * 119.99947 * 60.00099 * 5 3 2 8 8 N 1.31505 * 119.99846 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99817 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47463 * 119.99750 * 9 7 5 12 12 H 1.48499 * 109.47082 * 239.99418 * 9 7 5 13 13 N 1.46502 * 109.47046 * 64.99839 * 3 2 1 14 14 C 1.34777 * 120.00023 * 274.72673 * 13 3 2 15 15 O 1.21358 * 120.00235 * 359.97438 * 14 13 3 16 16 C 1.49362 * 120.00070 * 180.02562 * 14 13 3 17 17 O 1.21373 * 119.99821 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00070 * 179.97438 * 16 14 13 19 19 C 1.39775 * 119.99952 * 174.73540 * 18 16 14 20 20 C 1.39288 * 120.87603 * 327.37770 * 19 18 16 21 21 N 1.32258 * 119.00935 * 179.76360 * 20 19 18 22 22 C 1.31806 * 120.89397 * 0.52512 * 21 20 19 23 23 C 1.50699 * 119.03022 * 179.70572 * 22 21 20 24 24 C 1.52997 * 109.47255 * 240.02059 * 23 22 21 25 25 C 1.53005 * 109.47180 * 0.02562 * 23 22 21 26 26 C 1.52998 * 109.47247 * 120.01574 * 23 22 21 27 27 N 1.31795 * 121.93934 * 359.72166 * 22 21 20 28 28 C 1.32255 * 120.90071 * 0.02562 * 27 22 21 29 29 H 1.09006 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46945 * 299.99672 * 1 2 3 31 31 H 1.08993 * 109.47286 * 60.00255 * 1 2 3 32 32 H 1.08993 * 109.47440 * 240.00011 * 2 1 3 33 33 H 1.09005 * 109.47392 * 119.99347 * 2 1 3 34 34 H 0.97001 * 120.00340 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00226 * 95.00911 * 13 3 2 36 36 H 0.96999 * 119.99580 * 354.73410 * 18 16 14 37 37 H 1.08002 * 120.49508 * 359.97438 * 20 19 18 38 38 H 1.09001 * 109.47318 * 59.99348 * 24 23 22 39 39 H 1.08996 * 109.47328 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.46680 * 299.99759 * 24 23 22 41 41 H 1.09000 * 109.46874 * 60.00215 * 25 23 22 42 42 H 1.08996 * 109.47161 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.47247 * 300.00560 * 25 23 22 44 44 H 1.09005 * 109.47081 * 60.00001 * 26 23 22 45 45 H 1.09006 * 109.47236 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.47428 * 300.00164 * 26 23 22 47 47 H 1.07997 * 120.49848 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3368 -2.1728 9 14 6.0049 0.8804 -1.3811 10 1 6.5986 1.5456 -0.1936 11 1 6.4963 -0.5187 -1.4627 12 1 6.3998 1.6160 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4371 2.6692 1.3650 15 8 -0.3359 2.6418 0.4299 16 6 0.0421 3.3374 2.6411 17 8 0.8154 3.3652 3.5762 18 7 -1.1729 3.9096 2.7542 19 6 -1.5854 4.4376 3.9809 20 6 -1.1733 3.8633 5.1811 21 7 -1.5819 4.3960 6.3206 22 6 -2.3757 5.4482 6.3296 23 6 -2.8212 6.0169 7.6521 24 6 -4.3476 5.9641 7.7419 25 6 -2.2145 5.1949 8.7911 26 6 -2.3535 7.4692 7.7663 27 7 -2.7916 6.0173 5.2160 28 6 -2.4242 5.5483 4.0352 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.8292 -0.0616 -2.9495 35 1 2.2718 2.1233 1.9978 36 1 -1.7612 3.9549 1.9842 37 1 -0.5269 2.9981 5.1812 38 1 -4.6808 4.9294 7.6605 39 1 -4.6698 6.3750 8.6986 40 1 -4.7797 6.5498 6.9304 41 1 -1.1270 5.2327 8.7271 42 1 -2.5370 5.6060 9.7477 43 1 -2.5474 4.1602 8.7099 44 1 -2.7856 8.0549 6.9548 45 1 -2.6761 7.8807 8.7227 46 1 -1.2660 7.5068 7.7024 47 1 -2.7692 6.0195 3.1268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128091563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:59 Heat of formation + Delta-G solvation = -32.045467 kcal Electronic energy + Delta-G solvation = -28501.947882 eV Core-core repulsion = 24491.823214 eV Total energy + Delta-G solvation = -4010.124668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73226 -40.39610 -38.52491 -37.06271 -35.65896 -34.93618 -33.97850 -32.51237 -31.09311 -30.25137 -27.59352 -27.54097 -27.39222 -25.53682 -24.77037 -23.70667 -22.73121 -20.66578 -20.22223 -19.63844 -19.01759 -17.68322 -17.41086 -16.82114 -16.43387 -15.84501 -15.64895 -15.27596 -15.16554 -14.70228 -14.39848 -14.21422 -14.11129 -13.86082 -13.71799 -13.47101 -12.82332 -12.54626 -12.48136 -12.22539 -12.01023 -11.88610 -11.70619 -11.60094 -11.46699 -11.38487 -11.20108 -11.14863 -11.07308 -11.03290 -10.97846 -10.93051 -10.42830 -10.33590 -9.78552 -9.50100 -9.21660 -9.18917 -8.67551 -8.63907 -8.14610 -6.23885 -4.33801 0.50985 0.85088 1.66918 2.38214 3.18696 3.27288 3.30539 3.41306 3.57942 3.60756 3.85873 3.91410 4.24499 4.29024 4.61405 4.63776 4.71448 4.76402 4.94794 5.08461 5.10193 5.36692 5.37785 5.53700 5.55453 5.57776 5.62971 5.68041 5.81738 5.91948 6.02345 6.17676 6.23754 6.25282 6.27908 6.46879 6.70766 6.79368 6.86474 6.99511 7.03763 7.18479 7.37157 7.54933 7.64206 7.73158 7.88129 8.00541 8.31386 8.51108 8.76699 9.33388 10.81511 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.002196 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.132068 B =12747.575698 C =13215.668788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.664 5.664 14 C 0.496 3.504 15 O -0.526 6.526 16 C 0.508 3.492 17 O -0.503 6.503 18 N -0.642 5.642 19 C 0.044 3.956 20 C 0.150 3.850 21 N -0.490 5.490 22 C 0.303 3.697 23 C 0.003 3.997 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.136 4.136 27 N -0.493 5.493 28 C 0.129 3.871 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.427 0.573 37 H 0.179 0.821 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 9.488 15.934 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.313 5.313 14 C 0.274 3.726 15 O -0.405 6.405 16 C 0.292 3.708 17 O -0.376 6.376 18 N -0.290 5.290 19 C -0.056 4.056 20 C -0.019 4.019 21 N -0.203 5.203 22 C 0.035 3.965 23 C 0.001 3.999 24 C -0.193 4.193 25 C -0.187 4.187 26 C -0.194 4.194 27 N -0.206 5.206 28 C -0.041 4.041 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.266 0.734 37 H 0.195 0.805 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -13.590 9.682 16.539 23.494 hybrid contribution 1.334 -0.425 -1.193 1.839 sum -12.256 9.257 15.347 21.712 Atomic orbital electron populations 1.21853 0.98296 0.98522 1.00952 1.21971 0.92642 0.99322 1.02892 1.19061 0.94908 0.89431 0.79929 0.92641 1.21230 0.90222 1.39516 1.06626 0.91685 1.24871 0.98901 0.94546 0.95220 1.69881 1.35244 1.37343 1.09355 0.86349 0.84431 0.77886 0.78227 1.19616 1.20758 1.20805 1.46498 1.13311 1.52146 1.19355 1.19449 0.84689 0.81683 0.86780 1.90760 1.51120 1.59607 1.39003 1.21211 0.81039 0.78484 0.90111 1.90754 1.50354 1.55969 1.40493 1.43098 1.17849 1.56972 1.11097 1.19618 1.01144 0.96755 0.88069 1.23462 0.95065 0.97687 0.85699 1.68315 1.11282 1.11341 1.29391 1.23052 0.90137 0.89099 0.94171 1.19346 0.96457 0.95882 0.88233 1.21840 0.92721 1.02196 1.02561 1.21723 1.01461 0.99797 0.95706 1.21846 1.01303 0.93741 1.02515 1.68107 1.23650 1.30831 0.97962 1.23128 0.93960 0.90054 0.96934 0.95379 0.94727 0.92902 0.87750 0.94583 0.92431 0.76306 0.73365 0.80454 0.92753 0.91635 0.91479 0.91887 0.92394 0.91940 0.91488 0.91631 0.92700 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.52 37.16 0.32 -2.52 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.31 2.24 -69.08 -0.15 6.16 16 4 H 0.06 1.49 7.57 -51.93 -0.39 1.09 16 5 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.54 11.29 55.43 0.63 -22.91 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.66 -13.22 5.01 -55.39 -0.28 -13.49 16 14 C 0.50 9.00 6.45 -11.63 -0.08 8.92 16 15 O -0.53 -10.37 13.66 5.49 0.07 -10.29 16 16 C 0.51 7.77 7.66 -11.63 -0.09 7.68 16 17 O -0.50 -8.39 14.18 5.48 0.08 -8.31 16 18 N -0.64 -7.76 5.35 -10.11 -0.05 -7.82 16 19 C 0.04 0.52 6.33 -83.45 -0.53 0.00 16 20 C 0.15 1.96 9.94 -16.98 -0.17 1.79 16 21 N -0.49 -6.33 8.99 -10.57 -0.10 -6.43 16 22 C 0.30 3.56 6.25 -157.18 -0.98 2.57 16 23 C 0.00 0.03 0.92 -155.66 -0.14 -0.12 16 24 C -0.14 -1.04 8.37 37.16 0.31 -0.73 16 25 C -0.13 -1.11 7.67 37.16 0.28 -0.82 16 26 C -0.14 -1.10 8.37 37.16 0.31 -0.79 16 27 N -0.49 -5.63 9.79 -10.57 -0.10 -5.73 16 28 C 0.13 1.34 11.26 -16.98 -0.19 1.15 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.03 0.67 5.67 -51.93 -0.29 0.38 16 31 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 32 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 35 H 0.40 7.52 8.01 -40.82 -0.33 7.20 16 36 H 0.43 4.38 8.30 -40.82 -0.34 4.04 16 37 H 0.18 2.39 6.48 -52.49 -0.34 2.05 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 41 H 0.06 0.60 8.04 -51.93 -0.42 0.19 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.57 8.04 -51.93 -0.42 0.16 16 44 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -28.54 385.60 -7.61 -36.15 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.00 Total: 10.06 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -1.65 Total: 7.94 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.10 Total: -56.38 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.15 Total: -18.61 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.54 -7.61 -36.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128091563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.104 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds