Wall clock time and date at job start Tue Mar 31 2020 19:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 H 1.09005 * 109.46851 * 305.00335 * 3 2 1 5 5 C 1.50696 * 109.47450 * 185.00064 * 3 2 1 6 6 H 1.08001 * 119.99896 * 239.99662 * 5 3 2 7 7 C 1.37879 * 119.99947 * 60.00099 * 5 3 2 8 8 N 1.31505 * 119.99846 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99817 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47463 * 119.99750 * 9 7 5 12 12 H 1.48499 * 109.47082 * 239.99418 * 9 7 5 13 13 N 1.46502 * 109.47046 * 64.99839 * 3 2 1 14 14 C 1.34777 * 120.00023 * 274.72673 * 13 3 2 15 15 O 1.21358 * 120.00235 * 359.97438 * 14 13 3 16 16 C 1.49362 * 120.00070 * 180.02562 * 14 13 3 17 17 O 1.21373 * 119.99821 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00070 * 179.97438 * 16 14 13 19 19 C 1.39775 * 119.99952 * 174.73540 * 18 16 14 20 20 C 1.39288 * 120.87603 * 327.37770 * 19 18 16 21 21 N 1.32258 * 119.00935 * 179.76360 * 20 19 18 22 22 C 1.31806 * 120.89397 * 0.52512 * 21 20 19 23 23 C 1.50699 * 119.03022 * 179.70572 * 22 21 20 24 24 C 1.52997 * 109.47255 * 240.02059 * 23 22 21 25 25 C 1.53005 * 109.47180 * 0.02562 * 23 22 21 26 26 C 1.52998 * 109.47247 * 120.01574 * 23 22 21 27 27 N 1.31795 * 121.93934 * 359.72166 * 22 21 20 28 28 C 1.32255 * 120.90071 * 0.02562 * 27 22 21 29 29 H 1.09006 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46945 * 299.99672 * 1 2 3 31 31 H 1.08993 * 109.47286 * 60.00255 * 1 2 3 32 32 H 1.08993 * 109.47440 * 240.00011 * 2 1 3 33 33 H 1.09005 * 109.47392 * 119.99347 * 2 1 3 34 34 H 0.97001 * 120.00340 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00226 * 95.00911 * 13 3 2 36 36 H 0.96999 * 119.99580 * 354.73410 * 18 16 14 37 37 H 1.08002 * 120.49508 * 359.97438 * 20 19 18 38 38 H 1.09001 * 109.47318 * 59.99348 * 24 23 22 39 39 H 1.08996 * 109.47328 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.46680 * 299.99759 * 24 23 22 41 41 H 1.09000 * 109.46874 * 60.00215 * 25 23 22 42 42 H 1.08996 * 109.47161 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.47247 * 300.00560 * 25 23 22 44 44 H 1.09005 * 109.47081 * 60.00001 * 26 23 22 45 45 H 1.09006 * 109.47236 * 179.97438 * 26 23 22 46 46 H 1.09000 * 109.47428 * 300.00164 * 26 23 22 47 47 H 1.07997 * 120.49848 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3368 -2.1728 9 14 6.0049 0.8804 -1.3811 10 1 6.5986 1.5456 -0.1936 11 1 6.4963 -0.5187 -1.4627 12 1 6.3998 1.6160 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4371 2.6692 1.3650 15 8 -0.3359 2.6418 0.4299 16 6 0.0421 3.3374 2.6411 17 8 0.8154 3.3652 3.5762 18 7 -1.1729 3.9096 2.7542 19 6 -1.5854 4.4376 3.9809 20 6 -1.1733 3.8633 5.1811 21 7 -1.5819 4.3960 6.3206 22 6 -2.3757 5.4482 6.3296 23 6 -2.8212 6.0169 7.6521 24 6 -4.3476 5.9641 7.7419 25 6 -2.2145 5.1949 8.7911 26 6 -2.3535 7.4692 7.7663 27 7 -2.7916 6.0173 5.2160 28 6 -2.4242 5.5483 4.0352 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.8292 -0.0616 -2.9495 35 1 2.2718 2.1233 1.9978 36 1 -1.7612 3.9549 1.9842 37 1 -0.5269 2.9981 5.1812 38 1 -4.6808 4.9294 7.6605 39 1 -4.6698 6.3750 8.6986 40 1 -4.7797 6.5498 6.9304 41 1 -1.1270 5.2327 8.7271 42 1 -2.5370 5.6060 9.7477 43 1 -2.5474 4.1602 8.7099 44 1 -2.7856 8.0549 6.9548 45 1 -2.6761 7.8807 8.7227 46 1 -1.2660 7.5068 7.7024 47 1 -2.7692 6.0195 3.1268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128091563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:58 Heat of formation + Delta-G solvation = -50.484590 kcal Electronic energy + Delta-G solvation = -28502.747462 eV Core-core repulsion = 24491.823214 eV Total energy + Delta-G solvation = -4010.924248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.72591 -41.64943 -39.93771 -37.91734 -37.21883 -36.14690 -34.90220 -34.33817 -32.83763 -31.23825 -29.19793 -28.27271 -28.15139 -26.79360 -25.70220 -25.17845 -24.18608 -22.07781 -21.30241 -21.01182 -20.38474 -18.78691 -18.66685 -17.99372 -17.69744 -17.31588 -17.09560 -16.76735 -16.22365 -15.99807 -15.60924 -15.34757 -15.09408 -14.93992 -14.65992 -14.62817 -14.55875 -13.89687 -13.51721 -13.22391 -13.17494 -13.14289 -13.01470 -12.84534 -12.74065 -12.69278 -12.55735 -12.39209 -12.17715 -12.11834 -11.99541 -11.95488 -11.83623 -11.77973 -11.60822 -11.10461 -10.77933 -10.57025 -10.31298 -9.87106 -9.64963 -8.19854 -6.36371 -0.48343 -0.06773 0.39640 1.14477 1.43174 1.46219 1.56853 2.07788 2.37200 2.59297 2.62478 2.82134 3.04640 3.10381 3.33327 3.45296 3.72576 3.88907 4.04109 4.04509 4.31514 4.48696 4.54733 4.61206 4.66966 4.71030 4.80295 4.81883 4.91439 5.01267 5.01473 5.03363 5.09286 5.19434 5.21919 5.33627 5.38045 5.38143 5.39395 5.50364 5.55170 5.61317 5.75822 5.83422 5.85985 6.11027 6.41685 6.65511 6.72152 6.96870 7.07072 7.35448 8.85362 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.002196 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.132068 B =12747.575698 C =13215.668788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.499 3.501 15 O -0.541 6.541 16 C 0.520 3.480 17 O -0.518 6.518 18 N -0.621 5.621 19 C 0.032 3.968 20 C 0.137 3.863 21 N -0.507 5.507 22 C 0.298 3.702 23 C -0.003 4.003 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.131 4.131 27 N -0.498 5.498 28 C 0.143 3.857 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.409 0.591 36 H 0.438 0.562 37 H 0.169 0.831 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 10.689 17.353 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.036 0.964 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.546 5.546 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.319 5.319 14 C 0.278 3.722 15 O -0.420 6.420 16 C 0.302 3.698 17 O -0.392 6.392 18 N -0.270 5.270 19 C -0.067 4.067 20 C -0.031 4.031 21 N -0.220 5.220 22 C 0.031 3.969 23 C -0.005 4.005 24 C -0.187 4.187 25 C -0.182 4.182 26 C -0.189 4.189 27 N -0.211 5.211 28 C -0.026 4.026 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.279 0.721 37 H 0.186 0.814 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.061 0.939 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.511 10.900 17.984 25.550 hybrid contribution 1.512 -0.733 -1.589 2.312 sum -13.000 10.167 16.395 23.263 Atomic orbital electron populations 1.21707 0.96462 0.99729 1.00474 1.21826 0.94230 0.98531 1.01729 1.18655 0.94038 0.89617 0.80285 0.96448 1.21542 0.91285 1.39401 1.06808 0.91426 1.25652 1.03012 0.94249 0.94971 1.70003 1.36870 1.37974 1.09799 0.85374 0.79448 0.77874 0.78118 1.19006 1.20372 1.20787 1.46249 1.14390 1.52840 1.18421 1.19820 0.83766 0.80950 0.87664 1.90751 1.51390 1.59879 1.40010 1.20442 0.81980 0.78861 0.88487 1.90764 1.51129 1.56891 1.40432 1.42823 1.16695 1.55754 1.11724 1.19612 1.02186 0.97694 0.87207 1.23428 0.95323 0.97827 0.86501 1.68348 1.12143 1.12136 1.29398 1.23671 0.89285 0.88520 0.95451 1.19556 0.97486 0.96373 0.87045 1.21807 0.91369 1.01866 1.03694 1.21688 1.00464 0.99363 0.96728 1.21820 1.00469 0.92947 1.03679 1.68238 1.23831 1.30852 0.98185 1.23686 0.92168 0.88910 0.97884 0.93307 0.94001 0.94433 0.90333 0.94151 0.92375 0.75583 0.72118 0.81420 0.93462 0.89398 0.91828 0.93336 0.90054 0.92943 0.91866 0.89315 0.93882 0.77543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.52 71.98 0.61 -4.52 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.33 2.24 44.24 0.10 13.43 16 4 H 0.02 0.98 7.57 -2.38 -0.02 0.96 16 5 C -0.55 -28.31 8.73 25.60 0.22 -28.08 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -49.47 11.29 21.45 0.24 -49.22 16 9 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.67 -26.87 5.01 -447.52 -2.24 -29.11 16 14 C 0.50 18.01 6.45 87.24 0.56 18.58 16 15 O -0.54 -21.27 13.66 -3.27 -0.04 -21.32 16 16 C 0.52 15.54 7.66 87.24 0.67 16.20 16 17 O -0.52 -17.08 14.18 -3.32 -0.05 -17.12 16 18 N -0.62 -14.18 5.35 -304.24 -1.63 -15.80 16 19 C 0.03 0.72 6.33 38.38 0.24 0.97 16 20 C 0.14 3.54 9.94 84.88 0.84 4.38 16 21 N -0.51 -12.88 8.99 -187.34 -1.68 -14.57 16 22 C 0.30 6.64 6.25 138.75 0.87 7.51 16 23 C 0.00 -0.04 0.92 -52.93 -0.05 -0.09 16 24 C -0.13 -1.72 8.37 71.98 0.60 -1.11 16 25 C -0.12 -1.97 7.67 71.98 0.55 -1.42 16 26 C -0.13 -1.87 8.37 71.98 0.60 -1.27 16 27 N -0.50 -10.45 9.79 -187.34 -1.83 -12.29 16 28 C 0.14 2.65 11.26 84.88 0.96 3.60 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.04 1.61 5.67 -2.39 -0.01 1.60 16 31 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 32 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 33 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.41 15.35 8.01 -92.71 -0.74 14.61 16 36 H 0.44 8.18 8.30 -92.71 -0.77 7.41 16 37 H 0.17 4.58 6.48 -2.91 -0.02 4.56 16 38 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.89 8.01 -2.38 -0.02 0.88 16 41 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 0.92 8.04 -2.39 -0.02 0.91 16 44 H 0.06 0.95 8.01 -2.38 -0.02 0.93 16 45 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 46 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -61.89 385.60 1.68 -60.21 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.50 Total: 31.81 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 7.40 Total: 24.20 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -7.15 Total: -120.99 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.09 Total: -38.44 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -61.89 1.68 -60.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128091563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.724 kcal (2) G-P(sol) polarization free energy of solvation -61.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds