Wall clock time and date at job start Tue Mar 31 2020 18:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 C 1.50709 * 109.47057 * 120.00321 * 2 1 3 5 5 O 1.21277 * 120.00013 * 354.09234 * 4 2 1 6 6 N 1.34775 * 119.99812 * 174.10063 * 4 2 1 7 7 C 1.46965 * 120.65403 * 5.96317 * 6 4 2 8 8 C 1.53193 * 108.88817 * 233.53962 * 7 6 4 9 9 C 1.53041 * 109.31578 * 305.44549 * 8 7 6 10 10 C 1.53048 * 109.53663 * 61.36470 * 9 8 7 11 11 C 1.46926 * 120.62909 * 186.15775 * 6 4 2 12 12 H 1.09001 * 109.58523 * 246.31311 * 11 6 4 13 13 C 1.50700 * 109.58810 * 6.59336 * 11 6 4 14 14 O 1.21305 * 119.99305 * 61.13919 * 13 11 6 15 15 N 1.34772 * 120.00172 * 241.13749 * 13 11 6 16 16 C 1.40593 * 119.99749 * 179.97438 * 15 13 11 17 17 C 1.40650 * 126.08710 * 359.69434 * 16 15 13 18 18 N 1.30906 * 108.38868 * 179.81421 * 17 16 15 19 19 N 1.40073 * 108.40723 * 0.43928 * 18 17 16 20 20 C 1.37322 * 126.06719 * 179.69368 * 19 18 17 21 21 H 1.07997 * 119.99976 * 180.02562 * 20 19 18 22 22 C 1.38987 * 120.00153 * 0.02775 * 20 19 18 23 23 N 1.31293 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47362 * 90.00166 * 24 22 20 26 26 H 1.48502 * 109.47223 * 210.00174 * 24 22 20 27 27 H 1.48503 * 109.47342 * 330.00080 * 24 22 20 28 28 C 1.35692 * 126.08163 * 180.02562 * 16 15 13 29 29 H 1.09004 * 109.46980 * 299.99898 * 1 2 3 30 30 H 1.08995 * 109.47166 * 59.99948 * 1 2 3 31 31 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46980 * 240.00102 * 2 1 3 33 33 H 1.09001 * 109.46959 * 54.35997 * 3 2 1 34 34 H 1.08998 * 109.47206 * 174.35403 * 3 2 1 35 35 H 1.08999 * 109.47279 * 294.35751 * 3 2 1 36 36 H 1.09007 * 109.46281 * 113.76064 * 7 6 4 37 37 H 1.09001 * 109.71476 * 353.47285 * 7 6 4 38 38 H 1.08997 * 109.49479 * 185.49318 * 8 7 6 39 39 H 1.08999 * 109.49561 * 65.39681 * 8 7 6 40 40 H 1.09003 * 109.45940 * 301.34971 * 9 8 7 41 41 H 1.08996 * 109.45057 * 181.37560 * 9 8 7 42 42 H 1.08992 * 109.49711 * 178.68359 * 10 9 8 43 43 H 1.08997 * 109.51994 * 58.59954 * 10 9 8 44 44 H 0.96996 * 120.00263 * 359.97438 * 15 13 11 45 45 H 1.08002 * 125.79848 * 359.95968 * 17 16 15 46 46 H 0.97006 * 119.99871 * 179.97438 * 23 22 20 47 47 H 1.07998 * 126.24441 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.2495 -1.0769 2.0812 6 7 3.3515 -0.9386 1.3855 7 6 4.3243 -0.3883 0.4312 8 6 5.2042 -1.5277 -0.0926 9 6 5.8334 -2.2664 1.0909 10 6 4.7299 -2.8700 1.9627 11 6 3.8446 -1.7459 2.5098 12 1 4.4270 -1.1172 3.1833 13 6 2.6774 -2.3395 3.2556 14 8 1.9162 -3.0947 2.6885 15 7 2.4795 -2.0314 4.5527 16 6 1.3902 -2.5849 5.2483 17 6 0.4294 -3.4647 4.7181 18 7 -0.4228 -3.7649 5.6654 19 7 -0.0474 -3.0837 6.8303 20 6 -0.6947 -3.1339 8.0404 21 1 -0.3183 -2.5657 8.8781 22 6 -1.8343 -3.9160 8.1870 23 7 -2.2916 -4.6071 7.1687 24 14 -2.7143 -3.9848 9.8332 25 1 -3.7430 -2.9152 9.8898 26 1 -3.3679 -5.3089 9.9902 27 1 -1.7317 -3.7849 10.9286 28 6 1.0753 -2.3604 6.5489 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.5965 1.9846 0.8352 34 1 3.1253 1.4441 0.1011 35 1 1.7615 1.9263 -0.9362 36 1 4.9465 0.3526 0.9333 37 1 3.7986 0.0796 -0.4011 38 1 5.9912 -1.1180 -0.7257 39 1 4.5947 -2.2212 -0.6719 40 1 6.4228 -1.5669 1.6838 41 1 6.4793 -3.0623 0.7200 42 1 5.1792 -3.4157 2.7923 43 1 4.1247 -3.5511 1.3645 44 1 3.0884 -1.4279 5.0062 45 1 0.4011 -3.8320 3.7029 46 1 -3.0868 -5.1533 7.2712 47 1 1.6150 -1.7258 7.2362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139303266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:07 Heat of formation + Delta-G solvation = 22.924438 kcal Electronic energy + Delta-G solvation = -30070.102036 eV Core-core repulsion = 26062.361042 eV Total energy + Delta-G solvation = -4007.740994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93496 -39.42974 -38.06194 -37.32798 -34.66697 -33.89734 -32.96709 -32.81057 -31.42095 -30.01837 -27.69441 -27.27367 -26.12157 -24.75019 -23.81161 -23.15392 -20.97207 -20.57182 -20.32494 -19.19228 -18.71997 -17.59910 -17.04363 -16.17472 -15.94863 -15.44319 -15.29100 -15.00084 -14.87752 -14.37088 -14.24579 -13.98819 -13.86815 -13.72432 -13.37113 -13.13996 -12.78508 -12.69799 -12.59257 -12.41680 -12.19619 -11.92546 -11.65958 -11.55448 -11.37066 -11.22740 -11.17393 -11.15137 -11.11818 -11.01955 -10.77788 -10.75975 -10.44751 -9.93729 -9.22856 -8.97446 -8.85286 -8.61656 -8.57656 -7.85152 -6.46270 -6.41192 -4.05973 2.64491 2.81991 3.04451 3.12517 3.17410 3.44412 3.72558 3.90952 3.97818 4.42237 4.49427 4.59144 4.66101 4.70913 4.77512 4.85814 4.90707 4.95498 5.01796 5.15084 5.16599 5.20617 5.28413 5.42093 5.45198 5.51054 5.56633 5.63861 5.65008 5.77062 5.80915 5.84389 5.86626 6.05893 6.16368 6.31314 6.41339 6.44009 6.67289 7.07924 7.20398 7.34732 7.38215 7.48956 8.02845 8.34922 8.42442 8.52490 8.84138 9.19502 9.56796 9.87671 10.55131 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002988 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.413734 B = 9367.112641 C =10224.998896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.154 4.154 4 C 0.503 3.497 5 O -0.477 6.477 6 N -0.608 5.608 7 C 0.104 3.896 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.133 3.867 12 H 0.080 0.920 13 C 0.523 3.477 14 O -0.520 6.520 15 N -0.625 5.625 16 C -0.042 4.042 17 C -0.027 4.027 18 N -0.262 5.262 19 N -0.148 5.148 20 C -0.324 4.324 21 H 0.113 0.887 22 C 0.046 3.954 23 N -0.773 5.773 24 Si 0.933 3.067 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.089 4.089 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.390 0.610 45 H 0.174 0.826 46 H 0.272 0.728 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.368 11.115 -14.536 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 C -0.211 4.211 4 C 0.291 3.709 5 O -0.348 6.348 6 N -0.346 5.346 7 C -0.019 4.019 8 C -0.177 4.177 9 C -0.154 4.154 10 C -0.161 4.161 11 C 0.026 3.974 12 H 0.097 0.903 13 C 0.308 3.692 14 O -0.396 6.396 15 N -0.268 5.268 16 C -0.147 4.147 17 C -0.202 4.202 18 N -0.093 5.093 19 N 0.084 4.916 20 C -0.456 4.456 21 H 0.131 0.869 22 C -0.171 4.171 23 N -0.400 5.400 24 Si 0.757 3.243 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.189 1.189 28 C -0.239 4.239 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.222 0.778 45 H 0.191 0.809 46 H 0.083 0.917 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.101 9.537 -14.230 22.188 hybrid contribution 0.892 0.899 0.744 1.469 sum 14.994 10.437 -13.486 22.707 Atomic orbital electron populations 1.21613 0.92279 1.03229 1.01942 1.21236 0.98496 0.96835 0.96411 1.22059 1.01619 0.94483 1.02985 1.20813 0.81533 0.79826 0.88771 1.90926 1.53872 1.48052 1.41960 1.47959 1.06123 1.53003 1.27527 1.21985 0.91329 0.95739 0.92833 1.21969 0.99337 0.98170 0.98194 1.21506 0.97367 0.99984 0.96584 1.21819 0.96668 0.97063 1.00540 1.21073 0.94585 0.93196 0.88526 0.90253 1.19455 0.85436 0.82649 0.81641 1.90569 1.45011 1.37406 1.66635 1.42338 1.27399 1.46853 1.10233 1.17201 0.96142 1.09593 0.91807 1.24037 0.94585 1.01659 0.99951 1.78217 1.21757 1.19073 0.90293 1.44476 1.14194 1.24924 1.08028 1.19796 1.09340 1.30353 0.86108 0.86898 1.25607 0.96899 0.95362 0.99210 1.70236 1.19375 1.20937 1.29440 0.85868 0.79569 0.78233 0.80653 1.19717 1.20194 1.18923 1.21215 0.97477 1.09162 0.96075 0.91711 0.92335 0.91725 0.89054 0.91890 0.91447 0.91531 0.91349 0.88631 0.90689 0.91193 0.91673 0.91285 0.90383 0.90124 0.77801 0.80934 0.91695 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.50 37.16 0.32 -1.33 16 2 C -0.11 -1.19 2.43 -91.77 -0.22 -1.41 16 3 C -0.15 -1.23 8.69 37.16 0.32 -0.91 16 4 C 0.50 7.61 6.74 -10.98 -0.07 7.53 16 5 O -0.48 -9.96 11.74 -19.13 -0.22 -10.19 16 6 N -0.61 -7.38 2.98 -166.50 -0.50 -7.88 16 7 C 0.10 0.77 5.03 -3.69 -0.02 0.75 16 8 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 9 C -0.12 -0.88 5.88 -26.69 -0.16 -1.03 16 10 C -0.12 -1.37 5.32 -26.61 -0.14 -1.51 16 11 C 0.13 1.77 3.31 -68.75 -0.23 1.54 16 12 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 13 C 0.52 10.04 4.35 -10.99 -0.05 9.99 16 14 O -0.52 -12.24 11.75 -19.16 -0.23 -12.46 16 15 N -0.63 -12.46 5.47 -10.00 -0.05 -12.51 16 16 C -0.04 -1.06 6.90 -83.84 -0.58 -1.64 16 17 C -0.03 -0.77 10.85 -17.04 -0.18 -0.95 16 18 N -0.26 -8.17 10.40 30.80 0.32 -7.85 16 19 N -0.15 -4.33 3.74 -11.41 -0.04 -4.38 16 20 C -0.32 -9.09 10.25 -14.81 -0.15 -9.24 16 21 H 0.11 2.84 7.83 -52.49 -0.41 2.43 16 22 C 0.05 1.24 5.50 -17.50 -0.10 1.15 16 23 N -0.77 -22.77 11.81 55.49 0.66 -22.12 16 24 Si 0.93 19.93 29.55 -169.99 -5.02 14.91 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.09 -2.26 11.49 -16.39 -0.19 -2.45 16 29 H 0.06 0.91 8.04 -51.93 -0.42 0.50 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.09 0.83 7.67 -51.93 -0.40 0.43 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.43 5.10 -51.93 -0.26 0.17 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.10 0.57 4.45 -51.93 -0.23 0.34 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.09 7.94 -51.93 -0.41 0.68 16 44 H 0.39 6.17 8.67 -40.82 -0.35 5.82 16 45 H 0.17 5.05 5.92 -52.49 -0.31 4.74 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.14 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -38.69 371.41 -8.10 -46.80 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.00 Total: 10.68 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.61 Total: -0.59 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.38 Total: -54.74 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.45 Total: -22.65 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.69 -8.10 -46.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139303266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.721 kcal (2) G-P(sol) polarization free energy of solvation -38.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds