Wall clock time and date at job start Tue Mar 31 2020 18:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 C 1.50709 * 109.47057 * 120.00321 * 2 1 3 5 5 O 1.21277 * 120.00013 * 354.09234 * 4 2 1 6 6 N 1.34775 * 119.99812 * 174.10063 * 4 2 1 7 7 C 1.46965 * 120.65403 * 5.96317 * 6 4 2 8 8 C 1.53193 * 108.88817 * 233.53962 * 7 6 4 9 9 C 1.53041 * 109.31578 * 305.44549 * 8 7 6 10 10 C 1.53048 * 109.53663 * 61.36470 * 9 8 7 11 11 C 1.46926 * 120.62909 * 186.15775 * 6 4 2 12 12 H 1.09001 * 109.58523 * 246.31311 * 11 6 4 13 13 C 1.50700 * 109.58810 * 6.59336 * 11 6 4 14 14 O 1.21305 * 119.99305 * 61.13919 * 13 11 6 15 15 N 1.34772 * 120.00172 * 241.13749 * 13 11 6 16 16 C 1.40593 * 119.99749 * 179.97438 * 15 13 11 17 17 C 1.40650 * 126.08710 * 359.69434 * 16 15 13 18 18 N 1.30906 * 108.38868 * 179.81421 * 17 16 15 19 19 N 1.40073 * 108.40723 * 0.43928 * 18 17 16 20 20 C 1.37322 * 126.06719 * 179.69368 * 19 18 17 21 21 H 1.07997 * 119.99976 * 180.02562 * 20 19 18 22 22 C 1.38987 * 120.00153 * 0.02775 * 20 19 18 23 23 N 1.31293 * 119.99911 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47362 * 90.00166 * 24 22 20 26 26 H 1.48502 * 109.47223 * 210.00174 * 24 22 20 27 27 H 1.48503 * 109.47342 * 330.00080 * 24 22 20 28 28 C 1.35692 * 126.08163 * 180.02562 * 16 15 13 29 29 H 1.09004 * 109.46980 * 299.99898 * 1 2 3 30 30 H 1.08995 * 109.47166 * 59.99948 * 1 2 3 31 31 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46980 * 240.00102 * 2 1 3 33 33 H 1.09001 * 109.46959 * 54.35997 * 3 2 1 34 34 H 1.08998 * 109.47206 * 174.35403 * 3 2 1 35 35 H 1.08999 * 109.47279 * 294.35751 * 3 2 1 36 36 H 1.09007 * 109.46281 * 113.76064 * 7 6 4 37 37 H 1.09001 * 109.71476 * 353.47285 * 7 6 4 38 38 H 1.08997 * 109.49479 * 185.49318 * 8 7 6 39 39 H 1.08999 * 109.49561 * 65.39681 * 8 7 6 40 40 H 1.09003 * 109.45940 * 301.34971 * 9 8 7 41 41 H 1.08996 * 109.45057 * 181.37560 * 9 8 7 42 42 H 1.08992 * 109.49711 * 178.68359 * 10 9 8 43 43 H 1.08997 * 109.51994 * 58.59954 * 10 9 8 44 44 H 0.96996 * 120.00263 * 359.97438 * 15 13 11 45 45 H 1.08002 * 125.79848 * 359.95968 * 17 16 15 46 46 H 0.97006 * 119.99871 * 179.97438 * 23 22 20 47 47 H 1.07998 * 126.24441 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.2495 -1.0769 2.0812 6 7 3.3515 -0.9386 1.3855 7 6 4.3243 -0.3883 0.4312 8 6 5.2042 -1.5277 -0.0926 9 6 5.8334 -2.2664 1.0909 10 6 4.7299 -2.8700 1.9627 11 6 3.8446 -1.7459 2.5098 12 1 4.4270 -1.1172 3.1833 13 6 2.6774 -2.3395 3.2556 14 8 1.9162 -3.0947 2.6885 15 7 2.4795 -2.0314 4.5527 16 6 1.3902 -2.5849 5.2483 17 6 0.4294 -3.4647 4.7181 18 7 -0.4228 -3.7649 5.6654 19 7 -0.0474 -3.0837 6.8303 20 6 -0.6947 -3.1339 8.0404 21 1 -0.3183 -2.5657 8.8781 22 6 -1.8343 -3.9160 8.1870 23 7 -2.2916 -4.6071 7.1687 24 14 -2.7143 -3.9848 9.8332 25 1 -3.7430 -2.9152 9.8898 26 1 -3.3679 -5.3089 9.9902 27 1 -1.7317 -3.7849 10.9286 28 6 1.0753 -2.3604 6.5489 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.5965 1.9846 0.8352 34 1 3.1253 1.4441 0.1011 35 1 1.7615 1.9263 -0.9362 36 1 4.9465 0.3526 0.9333 37 1 3.7986 0.0796 -0.4011 38 1 5.9912 -1.1180 -0.7257 39 1 4.5947 -2.2212 -0.6719 40 1 6.4228 -1.5669 1.6838 41 1 6.4793 -3.0623 0.7200 42 1 5.1792 -3.4157 2.7923 43 1 4.1247 -3.5511 1.3645 44 1 3.0884 -1.4279 5.0062 45 1 0.4011 -3.8320 3.7029 46 1 -3.0868 -5.1533 7.2712 47 1 1.6150 -1.7258 7.2362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139303266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:06 Heat of formation + Delta-G solvation = -4.713882 kcal Electronic energy + Delta-G solvation = -30071.300524 eV Core-core repulsion = 26062.361042 eV Total energy + Delta-G solvation = -4008.939481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.14810 -41.36382 -39.57582 -38.35066 -35.90191 -35.55808 -34.88738 -33.67457 -32.49055 -32.04774 -29.60523 -28.09745 -27.31824 -26.55216 -24.73475 -24.16963 -22.83632 -21.96627 -21.39637 -21.11137 -19.79998 -19.32683 -18.42609 -17.50511 -17.30527 -17.20497 -16.62764 -16.35969 -15.85226 -15.72560 -15.53734 -15.15053 -15.02234 -14.91017 -14.81596 -14.72016 -14.40799 -13.77543 -13.75195 -13.49210 -13.27553 -13.25021 -13.05739 -12.93181 -12.85385 -12.82368 -12.48792 -12.18427 -12.08851 -12.03259 -11.92860 -11.72756 -11.66932 -11.43972 -10.96132 -10.80568 -10.46784 -10.35262 -10.06551 -9.61981 -8.46084 -8.45268 -6.22351 1.24452 1.37465 1.50629 1.56743 1.70189 1.81186 2.07868 2.17703 2.35724 2.68362 2.92485 3.09494 3.53117 3.75886 3.87056 3.90253 3.94340 4.05174 4.09258 4.15246 4.25665 4.39838 4.43881 4.55476 4.63234 4.65760 4.72448 4.84040 4.85849 4.89563 4.91466 5.00444 5.01469 5.09841 5.13146 5.16916 5.23349 5.27587 5.31133 5.34871 5.48142 5.53712 5.60594 5.97548 6.36688 6.40235 6.76124 6.87285 7.25899 7.48966 7.62123 7.75186 8.53942 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002988 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.413734 B = 9367.112641 C =10224.998896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.146 4.146 4 C 0.489 3.511 5 O -0.550 6.550 6 N -0.603 5.603 7 C 0.095 3.905 8 C -0.136 4.136 9 C -0.110 4.110 10 C -0.120 4.120 11 C 0.139 3.861 12 H 0.116 0.884 13 C 0.517 3.483 14 O -0.568 6.568 15 N -0.623 5.623 16 C -0.027 4.027 17 C -0.057 4.057 18 N -0.312 5.312 19 N -0.169 5.169 20 C -0.356 4.356 21 H 0.140 0.860 22 C -0.010 4.010 23 N -0.828 5.828 24 Si 1.023 2.977 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.242 1.242 28 C -0.090 4.090 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.117 0.883 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.412 0.588 45 H 0.155 0.845 46 H 0.275 0.725 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.865 14.055 -14.683 28.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.123 4.123 3 C -0.203 4.203 4 C 0.279 3.721 5 O -0.426 6.426 6 N -0.339 5.339 7 C -0.026 4.026 8 C -0.174 4.174 9 C -0.147 4.147 10 C -0.158 4.158 11 C 0.032 3.968 12 H 0.134 0.866 13 C 0.305 3.695 14 O -0.447 6.447 15 N -0.268 5.268 16 C -0.133 4.133 17 C -0.232 4.232 18 N -0.145 5.145 19 N 0.061 4.939 20 C -0.487 4.487 21 H 0.158 0.842 22 C -0.221 4.221 23 N -0.457 5.457 24 Si 0.841 3.159 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.165 1.165 28 C -0.240 4.240 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.135 0.865 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.248 0.752 45 H 0.172 0.828 46 H 0.085 0.915 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.721 12.531 -14.431 26.064 hybrid contribution -0.101 0.001 0.656 0.664 sum 17.620 12.532 -13.775 25.637 Atomic orbital electron populations 1.21595 0.94073 1.01020 1.02218 1.21296 0.97013 0.98891 0.95148 1.22051 1.02839 0.91677 1.03738 1.21675 0.82053 0.79179 0.89226 1.90898 1.55822 1.51331 1.44558 1.48150 1.06155 1.51879 1.27755 1.22446 0.90867 0.96580 0.92673 1.21990 0.99833 0.97505 0.98042 1.21519 0.96001 1.00813 0.96405 1.21836 0.97091 0.96000 1.00918 1.21115 0.92013 0.94505 0.89165 0.86594 1.20626 0.86258 0.81433 0.81133 1.90545 1.47221 1.39452 1.67462 1.42374 1.26432 1.47268 1.10763 1.17310 0.96411 1.07712 0.91879 1.23929 0.96326 1.03700 0.99210 1.78102 1.23497 1.21133 0.91721 1.44803 1.15484 1.25646 1.07995 1.20625 1.10206 1.31359 0.86492 0.84222 1.26959 0.97280 0.94019 1.03842 1.70439 1.20248 1.22276 1.32697 0.84552 0.78191 0.78187 0.74943 1.18919 1.20080 1.16496 1.21936 0.96588 1.08680 0.96777 0.94413 0.88897 0.95214 0.86516 0.93649 0.89082 0.88804 0.88299 0.86738 0.87113 0.92930 0.89234 0.90138 0.90120 0.93569 0.75240 0.82795 0.91521 0.79740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.50 71.98 0.61 -2.78 16 2 C -0.10 -2.13 2.43 -11.54 -0.03 -2.16 16 3 C -0.15 -1.87 8.69 71.98 0.63 -1.24 16 4 C 0.49 14.93 6.74 87.66 0.59 15.52 16 5 O -0.55 -24.48 11.74 20.59 0.24 -24.24 16 6 N -0.60 -13.57 2.98 -799.07 -2.38 -15.95 16 7 C 0.09 0.98 5.03 86.36 0.43 1.42 16 8 C -0.14 -1.23 6.08 30.67 0.19 -1.04 16 9 C -0.11 -1.22 5.88 30.62 0.18 -1.04 16 10 C -0.12 -2.53 5.32 30.67 0.16 -2.36 16 11 C 0.14 3.50 3.31 44.23 0.15 3.65 16 12 H 0.12 2.10 7.92 -2.39 -0.02 2.08 16 13 C 0.52 20.54 4.35 87.66 0.38 20.92 16 14 O -0.57 -28.82 11.75 20.50 0.24 -28.58 16 15 N -0.62 -25.22 5.47 -303.92 -1.66 -26.88 16 16 C -0.03 -1.41 6.90 37.73 0.26 -1.15 16 17 C -0.06 -3.52 10.85 85.42 0.93 -2.59 16 18 N -0.31 -20.75 10.40 -56.47 -0.59 -21.34 16 19 N -0.17 -10.29 3.74 -190.01 -0.71 -11.00 16 20 C -0.36 -20.28 10.25 84.01 0.86 -19.42 16 21 H 0.14 6.90 7.83 -2.91 -0.02 6.87 16 22 C -0.01 -0.56 5.50 84.95 0.47 -0.10 16 23 N -0.83 -51.17 11.81 21.66 0.26 -50.92 16 24 Si 1.02 41.08 29.55 68.60 2.03 43.11 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 28 C -0.09 -4.65 11.49 83.38 0.96 -3.69 16 29 H 0.04 1.15 8.04 -2.39 -0.02 1.13 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.12 1.84 7.67 -2.39 -0.02 1.82 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.73 5.10 -2.39 -0.01 0.72 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.11 0.79 4.45 -2.39 -0.01 0.78 16 38 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.29 7.94 -2.39 -0.02 1.27 16 44 H 0.41 12.58 8.67 -92.71 -0.80 11.78 16 45 H 0.16 9.99 5.92 -2.91 -0.02 9.97 16 46 H 0.28 15.59 8.31 -92.70 -0.77 14.82 16 47 H 0.19 7.62 8.06 -2.91 -0.02 7.60 16 Total: -1.00 -96.65 371.41 4.38 -92.27 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.19 Total: 39.62 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 6.77 Total: 3.92 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.08 Total: -126.09 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: 0.48 Total: -52.82 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -96.65 4.38 -92.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139303266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.553 kcal (2) G-P(sol) polarization free energy of solvation -96.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds