Wall clock time and date at job start Tue Mar 31 2020 18:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47060 * 2 1 4 4 C 1.52998 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47175 * 55.00139 * 4 3 2 6 6 C 1.52995 * 109.47183 * 174.99957 * 4 3 2 7 7 N 1.46497 * 109.47210 * 295.00467 * 4 3 2 8 8 C 1.46768 * 124.35111 * 120.00013 * 7 4 3 9 9 C 1.54480 * 105.47336 * 162.95981 * 8 7 4 10 10 H 1.08998 * 110.96965 * 143.57239 * 9 8 7 11 11 C 1.50696 * 110.97178 * 267.29777 * 9 8 7 12 12 O 1.21306 * 120.00072 * 356.63683 * 11 9 8 13 13 N 1.34776 * 120.00096 * 176.91001 * 11 9 8 14 14 C 1.40600 * 119.99812 * 179.72352 * 13 11 9 15 15 C 1.40642 * 126.08508 * 0.02781 * 14 13 11 16 16 N 1.30913 * 108.38954 * 179.97438 * 15 14 13 17 17 N 1.40066 * 108.40580 * 0.02562 * 16 15 14 18 18 C 1.37316 * 126.06929 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00226 * 174.14169 * 18 17 16 20 20 C 1.38992 * 120.00325 * 354.14944 * 18 17 16 21 21 N 1.31299 * 119.99444 * 5.94347 * 20 18 17 22 22 Si 1.86795 * 120.00238 * 185.95325 * 20 18 17 23 23 H 1.48496 * 109.47535 * 94.97595 * 22 20 18 24 24 H 1.48507 * 109.47114 * 214.97695 * 22 20 18 25 25 H 1.48501 * 109.47287 * 334.97307 * 22 20 18 26 26 C 1.35678 * 126.07819 * 179.71591 * 14 13 11 27 27 C 1.54627 * 101.79915 * 25.43345 * 9 8 7 28 28 C 1.34419 * 124.34854 * 299.97120 * 7 4 3 29 29 O 1.21277 * 124.94360 * 0.39555 * 28 7 4 30 30 H 1.09003 * 109.47073 * 59.99881 * 1 2 3 31 31 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47206 * 299.99508 * 1 2 3 33 33 H 1.09002 * 109.47206 * 240.00492 * 2 1 3 34 34 H 1.09000 * 109.47558 * 120.00036 * 2 1 3 35 35 H 1.09002 * 109.46709 * 60.00188 * 3 2 1 36 36 H 1.09000 * 109.46964 * 300.00399 * 3 2 1 37 37 H 1.09010 * 109.46923 * 60.00480 * 6 4 3 38 38 H 1.08994 * 109.47403 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47459 * 300.00196 * 6 4 3 40 40 H 1.09002 * 110.24436 * 43.96032 * 8 7 4 41 41 H 1.08992 * 110.24317 * 281.96276 * 8 7 4 42 42 H 0.97000 * 120.00133 * 359.72960 * 13 11 9 43 43 H 1.07997 * 125.80559 * 359.97438 * 15 14 13 44 44 H 0.96994 * 119.99659 * 180.02562 * 21 20 18 45 45 H 1.08003 * 126.25074 * 0.02562 * 26 14 13 46 46 H 1.09000 * 110.48633 * 93.86059 * 27 9 8 47 47 H 1.08997 * 110.49109 * 216.50137 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1251 7 7 4.0578 0.8589 1.2527 8 6 4.9050 -0.3367 1.3342 9 6 5.5117 -0.3159 2.7548 10 1 5.5961 -1.3251 3.1577 11 6 6.8497 0.3774 2.7597 12 8 7.3320 0.7725 1.7191 13 7 7.5130 0.5537 3.9196 14 6 8.7641 1.1954 3.9234 15 6 9.4387 1.7018 2.7980 16 7 10.5700 2.2266 3.1962 17 7 10.6624 2.0762 4.5857 18 6 11.7025 2.4976 5.3771 19 1 11.6309 2.4160 6.4517 20 6 12.8474 3.0292 4.7954 21 7 12.8894 3.2369 3.4996 22 14 14.3264 3.4478 5.8568 23 1 15.2794 2.3091 5.8492 24 1 14.9967 4.6579 5.3168 25 1 13.8788 3.7094 7.2484 26 6 9.5325 1.4416 5.0142 27 6 4.4599 0.5057 3.5357 28 6 3.7874 1.3500 2.4744 29 8 3.1044 2.3278 2.6945 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.7164 3.4691 0.7166 38 1 5.1700 2.8796 -0.1242 39 1 3.7171 3.3137 -1.0567 40 1 5.6959 -0.2903 0.5856 41 1 4.3040 -1.2351 1.1939 42 1 7.1274 0.2379 4.7517 43 1 9.0839 1.6641 1.7787 44 1 13.6885 3.6076 3.0935 45 1 9.2949 1.1804 6.0349 46 1 3.7364 -0.1557 4.0124 47 1 4.9452 1.1397 4.2777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139315511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:09 Heat of formation + Delta-G solvation = 3.653223 kcal Electronic energy + Delta-G solvation = -29045.113112 eV Core-core repulsion = 25036.536456 eV Total energy + Delta-G solvation = -4008.576656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.03049 -39.75836 -38.53265 -36.62862 -35.69654 -34.27901 -33.28149 -32.89014 -30.39003 -29.99631 -27.87569 -27.61326 -26.81200 -25.04289 -23.37723 -22.60357 -21.60661 -20.98004 -20.00766 -19.45153 -18.90579 -17.72636 -17.11174 -16.89341 -15.63738 -15.54303 -15.41834 -15.21355 -15.05305 -14.54147 -14.25370 -14.04902 -13.80985 -13.67598 -13.58350 -13.29909 -13.00521 -12.88331 -12.75970 -12.53304 -12.17573 -12.01810 -11.88562 -11.69134 -11.65015 -11.63858 -11.42896 -11.28086 -11.08713 -10.94108 -10.87602 -10.84529 -10.53642 -10.18641 -9.60922 -9.24344 -9.17943 -8.82195 -8.70925 -8.07520 -6.72871 -6.57610 -4.24386 2.58414 2.73710 2.93069 3.00059 3.04265 3.09710 3.47065 3.64373 3.85278 4.17228 4.21058 4.41522 4.57027 4.61280 4.73468 4.80050 4.82405 4.98498 5.00793 5.10086 5.16669 5.24518 5.33009 5.34554 5.43913 5.48479 5.58958 5.61766 5.66109 5.70842 5.73046 5.83278 5.94023 6.00867 6.13449 6.22331 6.27371 6.43441 6.61828 6.87652 6.93649 7.08154 7.12451 7.22034 7.84485 8.12678 8.18585 8.25807 8.59893 8.80037 9.36499 9.65364 10.38696 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.002302 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.507558 B =12161.316273 C =12434.473719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.160 3.840 5 H 0.087 0.913 6 C -0.170 4.170 7 N -0.606 5.606 8 C 0.117 3.883 9 C -0.121 4.121 10 H 0.122 0.878 11 C 0.504 3.496 12 O -0.528 6.528 13 N -0.620 5.620 14 C -0.061 4.061 15 C -0.032 4.032 16 N -0.261 5.261 17 N -0.142 5.142 18 C -0.324 4.324 19 H 0.116 0.884 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.083 4.083 27 C -0.149 4.149 28 C 0.521 3.479 29 O -0.531 6.531 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.397 0.603 43 H 0.175 0.825 44 H 0.275 0.725 45 H 0.145 0.855 46 H 0.112 0.888 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 -9.490 -3.104 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.175 4.175 4 C 0.058 3.942 5 H 0.105 0.895 6 C -0.228 4.228 7 N -0.340 5.340 8 C -0.006 4.006 9 C -0.143 4.143 10 H 0.140 0.860 11 C 0.289 3.711 12 O -0.405 6.405 13 N -0.262 5.262 14 C -0.167 4.167 15 C -0.207 4.207 16 N -0.092 5.092 17 N 0.090 4.910 18 C -0.456 4.456 19 H 0.134 0.866 20 C -0.171 4.171 21 N -0.396 5.396 22 Si 0.758 3.242 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.234 4.234 27 C -0.189 4.189 28 C 0.309 3.691 29 O -0.408 6.408 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.230 0.770 43 H 0.192 0.808 44 H 0.085 0.915 45 H 0.163 0.837 46 H 0.130 0.870 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.498 -7.957 -4.367 19.712 hybrid contribution -0.216 -0.535 1.276 1.401 sum -17.715 -8.492 -3.091 19.887 Atomic orbital electron populations 1.21758 0.95973 1.01350 1.01774 1.21486 0.95726 0.96817 1.01761 1.22060 0.94552 0.97337 1.03528 1.20959 0.93543 0.94839 0.84903 0.89475 1.22176 1.02202 0.95786 1.02597 1.48271 1.50861 1.28727 1.06121 1.22013 0.94183 0.87435 0.97018 1.22272 0.93148 1.01445 0.97451 0.86046 1.19920 0.86019 0.81188 0.83954 1.90605 1.67960 1.50210 1.31723 1.42442 1.18301 1.56700 1.08760 1.17253 0.89935 1.14856 0.94615 1.24080 0.93965 1.03761 0.98923 1.78254 1.17930 1.24155 0.88908 1.44549 1.10538 1.30933 1.04963 1.19877 0.92876 1.42491 0.90351 0.86601 1.25651 0.99447 0.95784 0.96226 1.70224 1.27817 1.31745 1.09789 0.85812 0.80139 0.78522 0.79680 1.19640 1.20103 1.18770 1.21267 0.92584 1.12208 0.97298 1.22423 0.98520 0.99725 0.98268 1.20691 0.80030 0.84132 0.84255 1.90686 1.39879 1.26361 1.83831 0.92854 0.92954 0.92802 0.92247 0.92146 0.90204 0.91013 0.91171 0.91712 0.91748 0.88293 0.90573 0.76993 0.80837 0.91467 0.83705 0.87008 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.97 5.82 -26.73 -0.16 -1.12 16 3 C -0.14 -1.31 4.64 -26.73 -0.12 -1.43 16 4 C 0.16 1.70 2.86 -67.94 -0.19 1.51 16 5 H 0.09 0.79 8.07 -51.93 -0.42 0.38 16 6 C -0.17 -2.09 9.20 37.16 0.34 -1.75 16 7 N -0.61 -6.96 2.28 -164.80 -0.38 -7.33 16 8 C 0.12 1.13 6.66 -3.12 -0.02 1.11 16 9 C -0.12 -1.20 3.54 -90.14 -0.32 -1.52 16 10 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 11 C 0.50 7.91 7.09 -10.99 -0.08 7.84 16 12 O -0.53 -10.44 12.67 5.53 0.07 -10.37 16 13 N -0.62 -10.25 5.28 -10.00 -0.05 -10.30 16 14 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 15 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 16 16 N -0.26 -7.58 10.42 30.80 0.32 -7.26 16 17 N -0.14 -3.88 3.74 -11.41 -0.04 -3.93 16 18 C -0.32 -8.54 10.24 -14.82 -0.15 -8.69 16 19 H 0.12 2.73 7.84 -52.48 -0.41 2.32 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 21 N -0.77 -21.51 11.84 55.50 0.66 -20.85 16 22 Si 0.93 18.91 29.56 -169.99 -5.02 13.88 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 27 C -0.15 -1.48 6.40 -26.69 -0.17 -1.65 16 28 C 0.52 6.96 7.40 -10.81 -0.08 6.88 16 29 O -0.53 -8.89 15.07 5.56 0.08 -8.80 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.52 7.75 -51.93 -0.40 0.11 16 35 H 0.08 0.97 6.63 -51.93 -0.34 0.62 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.02 6.80 -51.92 -0.35 0.67 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.13 6.97 -51.93 -0.36 0.76 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.40 4.91 8.83 -40.82 -0.36 4.55 16 43 H 0.17 4.48 5.92 -52.49 -0.31 4.17 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 46 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.11 1.14 7.75 -51.93 -0.40 0.74 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -35.27 385.00 -7.35 -42.61 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.15 Total: 10.08 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.63 Total: -3.54 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.51 Total: -49.66 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.15 Total: -19.17 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.27 -7.35 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139315511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.266 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds