Wall clock time and date at job start Tue Mar 31 2020 18:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47060 * 2 1 4 4 C 1.52998 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47175 * 55.00139 * 4 3 2 6 6 C 1.52995 * 109.47183 * 174.99957 * 4 3 2 7 7 N 1.46497 * 109.47210 * 295.00467 * 4 3 2 8 8 C 1.46768 * 124.35111 * 120.00013 * 7 4 3 9 9 C 1.54480 * 105.47336 * 162.95981 * 8 7 4 10 10 H 1.08998 * 110.96965 * 143.57239 * 9 8 7 11 11 C 1.50696 * 110.97178 * 267.29777 * 9 8 7 12 12 O 1.21306 * 120.00072 * 356.63683 * 11 9 8 13 13 N 1.34776 * 120.00096 * 176.91001 * 11 9 8 14 14 C 1.40600 * 119.99812 * 179.72352 * 13 11 9 15 15 C 1.40642 * 126.08508 * 0.02781 * 14 13 11 16 16 N 1.30913 * 108.38954 * 179.97438 * 15 14 13 17 17 N 1.40066 * 108.40580 * 0.02562 * 16 15 14 18 18 C 1.37316 * 126.06929 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00226 * 174.14169 * 18 17 16 20 20 C 1.38992 * 120.00325 * 354.14944 * 18 17 16 21 21 N 1.31299 * 119.99444 * 5.94347 * 20 18 17 22 22 Si 1.86795 * 120.00238 * 185.95325 * 20 18 17 23 23 H 1.48496 * 109.47535 * 94.97595 * 22 20 18 24 24 H 1.48507 * 109.47114 * 214.97695 * 22 20 18 25 25 H 1.48501 * 109.47287 * 334.97307 * 22 20 18 26 26 C 1.35678 * 126.07819 * 179.71591 * 14 13 11 27 27 C 1.54627 * 101.79915 * 25.43345 * 9 8 7 28 28 C 1.34419 * 124.34854 * 299.97120 * 7 4 3 29 29 O 1.21277 * 124.94360 * 0.39555 * 28 7 4 30 30 H 1.09003 * 109.47073 * 59.99881 * 1 2 3 31 31 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47206 * 299.99508 * 1 2 3 33 33 H 1.09002 * 109.47206 * 240.00492 * 2 1 3 34 34 H 1.09000 * 109.47558 * 120.00036 * 2 1 3 35 35 H 1.09002 * 109.46709 * 60.00188 * 3 2 1 36 36 H 1.09000 * 109.46964 * 300.00399 * 3 2 1 37 37 H 1.09010 * 109.46923 * 60.00480 * 6 4 3 38 38 H 1.08994 * 109.47403 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47459 * 300.00196 * 6 4 3 40 40 H 1.09002 * 110.24436 * 43.96032 * 8 7 4 41 41 H 1.08992 * 110.24317 * 281.96276 * 8 7 4 42 42 H 0.97000 * 120.00133 * 359.72960 * 13 11 9 43 43 H 1.07997 * 125.80559 * 359.97438 * 15 14 13 44 44 H 0.96994 * 119.99659 * 180.02562 * 21 20 18 45 45 H 1.08003 * 126.25074 * 0.02562 * 26 14 13 46 46 H 1.09000 * 110.48633 * 93.86059 * 27 9 8 47 47 H 1.08997 * 110.49109 * 216.50137 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1251 7 7 4.0578 0.8589 1.2527 8 6 4.9050 -0.3367 1.3342 9 6 5.5117 -0.3159 2.7548 10 1 5.5961 -1.3251 3.1577 11 6 6.8497 0.3774 2.7597 12 8 7.3320 0.7725 1.7191 13 7 7.5130 0.5537 3.9196 14 6 8.7641 1.1954 3.9234 15 6 9.4387 1.7018 2.7980 16 7 10.5700 2.2266 3.1962 17 7 10.6624 2.0762 4.5857 18 6 11.7025 2.4976 5.3771 19 1 11.6309 2.4160 6.4517 20 6 12.8474 3.0292 4.7954 21 7 12.8894 3.2369 3.4996 22 14 14.3264 3.4478 5.8568 23 1 15.2794 2.3091 5.8492 24 1 14.9967 4.6579 5.3168 25 1 13.8788 3.7094 7.2484 26 6 9.5325 1.4416 5.0142 27 6 4.4599 0.5057 3.5357 28 6 3.7874 1.3500 2.4744 29 8 3.1044 2.3278 2.6945 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.7164 3.4691 0.7166 38 1 5.1700 2.8796 -0.1242 39 1 3.7171 3.3137 -1.0567 40 1 5.6959 -0.2903 0.5856 41 1 4.3040 -1.2351 1.1939 42 1 7.1274 0.2379 4.7517 43 1 9.0839 1.6641 1.7787 44 1 13.6885 3.6076 3.0935 45 1 9.2949 1.1804 6.0349 46 1 3.7364 -0.1557 4.0124 47 1 4.9452 1.1397 4.2777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139315511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:08 Heat of formation + Delta-G solvation = -20.171303 kcal Electronic energy + Delta-G solvation = -29046.146221 eV Core-core repulsion = 25036.536456 eV Total energy + Delta-G solvation = -4009.609765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.10587 -41.43244 -39.95812 -37.58857 -36.63764 -35.90080 -34.97391 -33.73782 -32.24834 -31.10914 -29.48323 -28.61670 -27.60192 -26.87211 -24.55479 -23.47885 -22.82056 -22.29614 -21.44999 -21.05545 -19.90357 -19.30110 -18.38643 -17.81232 -17.41608 -16.93465 -16.62727 -16.41235 -15.95769 -15.72796 -15.70588 -15.10764 -15.02027 -14.91083 -14.78650 -14.72194 -14.43193 -13.78862 -13.58404 -13.50827 -13.49981 -13.28588 -13.10159 -12.95439 -12.83011 -12.77018 -12.70158 -12.52149 -12.41943 -12.07548 -11.88896 -11.80379 -11.61637 -11.52864 -11.01104 -10.81647 -10.63767 -10.56299 -10.09525 -9.61811 -8.51220 -8.47436 -6.24052 1.22252 1.39313 1.52470 1.57421 1.61133 1.87400 2.03449 2.10625 2.30945 2.53219 2.91911 3.08047 3.32762 3.39271 3.75449 3.81473 3.97591 4.04181 4.13149 4.32107 4.41613 4.43880 4.44851 4.57033 4.62829 4.63639 4.68434 4.73190 4.78209 4.87321 4.89731 4.94543 5.00578 5.01310 5.04406 5.11067 5.20897 5.27120 5.30644 5.34253 5.46853 5.50480 5.73941 5.96740 6.23073 6.33036 6.74635 6.78649 7.21983 7.42389 7.48841 7.69816 8.52159 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.002302 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.507558 B =12161.316273 C =12434.473719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.154 3.846 5 H 0.108 0.892 6 C -0.165 4.165 7 N -0.606 5.606 8 C 0.113 3.887 9 C -0.103 4.103 10 H 0.176 0.824 11 C 0.499 3.501 12 O -0.572 6.572 13 N -0.614 5.614 14 C -0.042 4.042 15 C -0.060 4.060 16 N -0.313 5.313 17 N -0.170 5.170 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.008 4.008 21 N -0.826 5.826 22 Si 1.019 2.981 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.243 1.243 26 C -0.080 4.080 27 C -0.139 4.139 28 C 0.503 3.497 29 O -0.577 6.577 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.421 0.579 43 H 0.166 0.834 44 H 0.276 0.724 45 H 0.188 0.812 46 H 0.157 0.843 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 -12.278 -1.393 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.166 4.166 4 C 0.052 3.948 5 H 0.126 0.874 6 C -0.223 4.223 7 N -0.339 5.339 8 C -0.009 4.009 9 C -0.124 4.124 10 H 0.193 0.807 11 C 0.287 3.713 12 O -0.451 6.451 13 N -0.259 5.259 14 C -0.148 4.148 15 C -0.235 4.235 16 N -0.145 5.145 17 N 0.061 4.939 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.219 4.219 21 N -0.454 5.454 22 Si 0.838 3.162 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.165 1.165 26 C -0.230 4.230 27 C -0.179 4.179 28 C 0.292 3.708 29 O -0.458 6.458 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.258 0.742 43 H 0.182 0.818 44 H 0.085 0.915 45 H 0.205 0.795 46 H 0.174 0.826 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.060 -10.799 -2.636 22.065 hybrid contribution 0.094 0.302 0.648 0.721 sum -18.966 -10.498 -1.988 21.768 Atomic orbital electron populations 1.21746 0.95555 1.02019 1.01431 1.21456 0.96047 0.95377 1.02392 1.21957 0.93455 0.98596 1.02591 1.21095 0.94449 0.93711 0.85543 0.87403 1.22127 1.00306 0.97356 1.02503 1.48445 1.50378 1.29125 1.05931 1.22257 0.94145 0.88210 0.96283 1.22347 0.88850 1.03054 0.98131 0.80679 1.21128 0.87573 0.79917 0.82713 1.90604 1.69495 1.51623 1.33406 1.42442 1.16392 1.56461 1.10631 1.17327 0.91584 1.12987 0.92934 1.24138 0.94487 1.05181 0.99733 1.78138 1.19647 1.25946 0.90818 1.44832 1.12112 1.32517 1.04471 1.20600 0.93291 1.43112 0.91529 0.84209 1.26891 1.02628 0.94935 0.97472 1.70408 1.28910 1.33784 1.12306 0.84581 0.75369 0.77962 0.78318 1.19061 1.20312 1.16539 1.22041 0.91174 1.10519 0.99309 1.22478 0.98839 0.99646 0.96965 1.21410 0.79787 0.83992 0.85616 1.90663 1.42064 1.28391 1.84633 0.92445 0.91743 0.93972 0.90714 0.92253 0.93102 0.89994 0.94029 0.94359 0.89609 0.90141 0.85930 0.74152 0.81755 0.91479 0.79462 0.82580 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.56 5.82 30.60 0.18 -1.38 16 3 C -0.13 -2.32 4.64 30.60 0.14 -2.18 16 4 C 0.15 3.18 2.86 44.99 0.13 3.31 16 5 H 0.11 1.77 8.07 -2.39 -0.02 1.76 16 6 C -0.16 -4.26 9.20 71.98 0.66 -3.60 16 7 N -0.61 -13.04 2.28 -793.91 -1.81 -14.85 16 8 C 0.11 1.83 6.66 86.83 0.58 2.41 16 9 C -0.10 -1.63 3.54 -10.48 -0.04 -1.66 16 10 H 0.18 1.06 8.14 -2.39 -0.02 1.04 16 11 C 0.50 14.84 7.09 87.66 0.62 15.46 16 12 O -0.57 -22.90 12.67 -3.11 -0.04 -22.94 16 13 N -0.61 -19.05 5.28 -303.93 -1.60 -20.66 16 14 C -0.04 -1.88 6.90 37.73 0.26 -1.62 16 15 C -0.06 -3.26 10.85 85.42 0.93 -2.33 16 16 N -0.31 -19.02 10.42 -56.47 -0.59 -19.61 16 17 N -0.17 -9.45 3.74 -190.00 -0.71 -10.16 16 18 C -0.35 -18.83 10.24 84.02 0.86 -17.97 16 19 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 20 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 21 N -0.83 -48.23 11.84 21.66 0.26 -47.97 16 22 Si 1.02 38.89 29.56 68.60 2.03 40.92 16 23 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.24 -8.32 7.11 99.48 0.71 -7.61 16 26 C -0.08 -3.64 11.49 83.37 0.96 -2.69 16 27 C -0.14 -2.28 6.40 30.62 0.20 -2.09 16 28 C 0.50 12.90 7.40 87.93 0.65 13.55 16 29 O -0.58 -19.74 15.07 -3.02 -0.05 -19.79 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.83 7.75 -2.39 -0.02 0.81 16 35 H 0.05 1.25 6.63 -2.39 -0.02 1.23 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.04 1.30 6.80 -2.38 -0.02 1.28 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.68 6.97 -2.39 -0.02 1.67 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.42 8.88 8.83 -92.71 -0.82 8.06 16 43 H 0.17 9.04 5.92 -2.91 -0.02 9.02 16 44 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.19 6.62 8.06 -2.91 -0.02 6.60 16 46 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 1.84 7.75 -2.39 -0.02 1.82 16 Total: -1.00 -85.78 385.00 4.96 -80.82 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.17 Total: 36.18 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 7.31 Total: -1.94 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.46 Total: -113.26 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.08 Total: -42.73 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -85.78 4.96 -80.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139315511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.649 kcal (2) G-P(sol) polarization free energy of solvation -85.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds