Wall clock time and date at job start Tue Mar 31 2020 18:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46828 * 2 1 4 4 C 1.53002 * 109.46911 * 239.99997 * 2 1 3 5 5 C 1.50695 * 109.47125 * 120.00320 * 2 1 3 6 6 O 1.21279 * 120.00209 * 353.80134 * 5 2 1 7 7 N 1.34781 * 119.99848 * 173.81213 * 5 2 1 8 8 C 1.47423 * 125.64556 * 354.88674 * 7 5 2 9 9 C 1.54908 * 104.92449 * 155.84132 * 8 7 5 10 10 C 1.55445 * 101.45303 * 37.00525 * 9 8 7 11 11 C 1.47026 * 125.64622 * 174.91428 * 7 5 2 12 12 H 1.09000 * 109.88397 * 300.45038 * 11 7 5 13 13 C 1.50698 * 109.88131 * 61.46739 * 11 7 5 14 14 O 1.21311 * 120.00349 * 359.97438 * 13 11 7 15 15 N 1.34774 * 120.00093 * 180.02562 * 13 11 7 16 16 C 1.40590 * 120.00558 * 179.97438 * 15 13 11 17 17 C 1.40650 * 126.07823 * 359.68423 * 16 15 13 18 18 N 1.30916 * 108.38589 * 179.85504 * 17 16 15 19 19 N 1.40066 * 108.40497 * 0.40564 * 18 17 16 20 20 C 1.37323 * 126.06659 * 179.73861 * 19 18 17 21 21 H 1.08009 * 119.99642 * 180.02562 * 20 19 18 22 22 C 1.38987 * 120.00335 * 0.02562 * 20 19 18 23 23 N 1.31294 * 119.99741 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47180 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47014 * 120.00245 * 24 22 20 27 27 H 1.48501 * 109.46693 * 239.99712 * 24 22 20 28 28 C 1.35686 * 126.08601 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.46898 * 299.99666 * 1 2 3 30 30 H 1.08994 * 109.47426 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47077 * 172.27755 * 3 2 1 33 33 H 1.09002 * 109.47439 * 292.27513 * 3 2 1 34 34 H 1.09000 * 109.47447 * 52.27816 * 3 2 1 35 35 H 1.08994 * 109.47143 * 299.99903 * 4 2 1 36 36 H 1.09004 * 109.47194 * 59.99898 * 4 2 1 37 37 H 1.08997 * 109.47214 * 179.97438 * 4 2 1 38 38 H 1.09002 * 110.36346 * 274.73099 * 8 7 5 39 39 H 1.08992 * 110.36611 * 36.94960 * 8 7 5 40 40 H 1.09003 * 111.00326 * 155.13273 * 9 8 7 41 41 H 1.08997 * 111.00819 * 278.98419 * 9 8 7 42 42 H 1.09005 * 110.70881 * 206.14652 * 10 9 8 43 43 H 1.08996 * 110.86255 * 82.95843 * 10 9 8 44 44 H 0.97008 * 119.99455 * 359.97438 * 15 13 11 45 45 H 1.08002 * 125.81006 * 359.97438 * 17 16 15 46 46 H 0.97002 * 120.00082 * 180.02562 * 23 22 20 47 47 H 1.07991 * 126.24088 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 8 1.2501 -1.0722 2.0836 7 7 3.3511 -0.9437 1.3827 8 6 4.3956 -0.6558 0.3829 9 6 5.7005 -0.4994 1.2029 10 6 5.5047 -1.5794 2.3036 11 6 3.9860 -1.5278 2.5732 12 1 3.7851 -0.9041 3.4442 13 6 3.4561 -2.9192 2.8060 14 8 2.6264 -3.3860 2.0542 15 7 3.9032 -3.6446 3.8502 16 6 3.4084 -4.9425 4.0678 17 6 2.4460 -5.6042 3.2843 18 7 2.2442 -6.7928 3.7946 19 7 3.0595 -6.9329 4.9249 20 6 3.1311 -8.0370 5.7382 21 1 3.7969 -8.0391 6.5886 22 6 2.3467 -9.1520 5.4672 23 7 1.5376 -9.1496 4.4331 24 14 2.4436 -10.6536 6.5740 25 1 3.4240 -10.4047 7.6612 26 1 1.1071 -10.9210 7.1636 27 1 2.8770 -11.8290 5.7766 28 6 3.7704 -5.7774 5.0743 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1212 1.4457 0.1381 33 1 1.7938 1.9149 -0.9510 34 1 1.5683 1.9947 0.8129 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 4.4862 -1.4839 -0.3201 39 1 4.1680 0.2685 -0.1480 40 1 6.5753 -0.7173 0.5903 41 1 5.7701 0.4965 1.6403 42 1 6.0648 -1.3201 3.2021 43 1 5.7983 -2.5635 1.9384 44 1 4.5664 -3.2711 4.4517 45 1 1.9579 -5.2012 2.4091 46 1 0.9899 -9.9276 4.2441 47 1 4.4890 -5.5658 5.8521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139548216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:03 Heat of formation + Delta-G solvation = 23.117968 kcal Electronic energy + Delta-G solvation = -29693.291283 eV Core-core repulsion = 25685.558681 eV Total energy + Delta-G solvation = -4007.732602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.86405 -39.63665 -38.49555 -37.08458 -35.65944 -34.10288 -33.10154 -31.57077 -30.32929 -29.77361 -27.61291 -27.55813 -27.05676 -25.05973 -24.56408 -22.23454 -21.79088 -20.83824 -20.15965 -19.30157 -18.76650 -17.59747 -16.86081 -16.72920 -15.94194 -15.40410 -15.08544 -14.91230 -14.82851 -14.56559 -14.15094 -13.89297 -13.82666 -13.62758 -13.36197 -13.12622 -12.91213 -12.80907 -12.52221 -12.31592 -12.27327 -11.85472 -11.81865 -11.71556 -11.62381 -11.58329 -11.33072 -11.23095 -11.09814 -11.04794 -10.85761 -10.69810 -10.47312 -10.03703 -9.49725 -9.26668 -9.09311 -8.73977 -8.46048 -7.97452 -6.60439 -6.49529 -4.15892 2.72017 2.91373 2.94012 3.08415 3.10218 3.14336 3.71909 3.75447 3.94337 4.21636 4.25532 4.45046 4.53323 4.65295 4.67506 4.77425 4.82274 4.99631 5.08139 5.11921 5.12382 5.15922 5.36616 5.43316 5.44370 5.48817 5.56214 5.58739 5.64310 5.65992 5.77372 5.80866 5.87669 5.94075 6.10880 6.17305 6.28538 6.32076 6.55038 6.98172 7.05191 7.22443 7.33483 7.55179 7.93232 8.26881 8.35710 8.38404 8.72394 8.99292 9.45876 9.75510 10.46657 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.002707 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.803556 B =10342.751471 C =11164.875043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.155 4.155 5 C 0.543 3.457 6 O -0.513 6.513 7 N -0.601 5.601 8 C 0.091 3.909 9 C -0.132 4.132 10 C -0.125 4.125 11 C 0.123 3.877 12 H 0.095 0.905 13 C 0.492 3.508 14 O -0.513 6.513 15 N -0.627 5.627 16 C -0.054 4.054 17 C -0.033 4.033 18 N -0.260 5.260 19 N -0.145 5.145 20 C -0.323 4.323 21 H 0.116 0.884 22 C 0.045 3.955 23 N -0.771 5.771 24 Si 0.934 3.066 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.085 4.085 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.394 0.606 45 H 0.174 0.826 46 H 0.273 0.727 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 20.558 -8.265 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.201 4.201 4 C -0.212 4.212 5 C 0.331 3.669 6 O -0.386 6.386 7 N -0.336 5.336 8 C -0.031 4.031 9 C -0.170 4.170 10 C -0.163 4.163 11 C 0.015 3.985 12 H 0.113 0.887 13 C 0.276 3.724 14 O -0.387 6.387 15 N -0.270 5.270 16 C -0.160 4.160 17 C -0.208 4.208 18 N -0.092 5.092 19 N 0.087 4.913 20 C -0.455 4.455 21 H 0.133 0.867 22 C -0.171 4.171 23 N -0.397 5.397 24 Si 0.758 3.242 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.236 4.236 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.227 0.773 45 H 0.190 0.810 46 H 0.084 0.916 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.120 18.796 -8.596 21.861 hybrid contribution 0.912 0.224 0.993 1.367 sum 8.032 19.021 -7.603 22.003 Atomic orbital electron populations 1.21667 0.91902 1.03159 1.01768 1.20715 0.97951 0.95965 0.93643 1.21978 1.01387 0.93951 1.02781 1.22184 1.02235 1.01143 0.95673 1.20174 0.80061 0.78654 0.88014 1.90751 1.53852 1.50059 1.43972 1.48096 1.06187 1.62707 1.16636 1.22700 0.87049 1.01457 0.91920 1.22865 0.97380 0.99455 0.97348 1.22712 0.92369 1.00822 1.00391 1.21427 0.93218 0.93111 0.90734 0.88694 1.20482 0.83194 0.87013 0.81748 1.90605 1.31545 1.70676 1.45908 1.42451 1.42421 1.13952 1.28185 1.17266 1.08337 0.87131 1.03232 1.24081 1.00883 0.93135 1.02713 1.78246 1.15544 1.16525 0.98839 1.44536 1.22155 1.08379 1.16217 1.19888 1.26310 0.90774 1.08558 0.86672 1.25638 0.95127 0.99591 0.96793 1.70237 1.17890 1.28894 1.22727 0.85776 0.78806 0.80096 0.79512 1.18734 1.19952 1.19970 1.21238 1.07791 0.90364 1.04227 0.91920 0.92181 0.91731 0.91766 0.91419 0.92045 0.91688 0.91711 0.91123 0.90927 0.89413 0.89435 0.90268 0.89116 0.89670 0.77347 0.80952 0.91604 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 7.78 37.16 0.29 -1.20 16 2 C -0.08 -0.89 0.75 -155.66 -0.12 -1.00 16 3 C -0.14 -1.14 8.28 37.16 0.31 -0.83 16 4 C -0.16 -1.50 8.13 37.16 0.30 -1.20 16 5 C 0.54 8.35 5.85 -10.99 -0.06 8.28 16 6 O -0.51 -10.52 14.97 -11.78 -0.18 -10.69 16 7 N -0.60 -7.78 2.83 -164.33 -0.47 -8.24 16 8 C 0.09 0.78 4.75 -2.53 -0.01 0.76 16 9 C -0.13 -0.84 7.11 -24.43 -0.17 -1.01 16 10 C -0.12 -1.08 6.42 -24.74 -0.16 -1.24 16 11 C 0.12 1.62 3.29 -68.10 -0.22 1.40 16 12 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 13 C 0.49 9.24 6.61 -10.99 -0.07 9.17 16 14 O -0.51 -12.02 12.04 -11.80 -0.14 -12.16 16 15 N -0.63 -11.71 5.40 -10.00 -0.05 -11.76 16 16 C -0.05 -1.31 6.90 -83.84 -0.58 -1.89 16 17 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 18 N -0.26 -7.92 10.40 30.80 0.32 -7.60 16 19 N -0.14 -4.13 3.74 -11.41 -0.04 -4.17 16 20 C -0.32 -8.82 10.25 -14.81 -0.15 -8.97 16 21 H 0.12 2.81 7.83 -52.48 -0.41 2.40 16 22 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 23 N -0.77 -22.26 11.81 55.49 0.66 -21.60 16 24 Si 0.93 19.48 29.55 -169.99 -5.02 14.45 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 C -0.09 -2.09 11.49 -16.39 -0.19 -2.28 16 29 H 0.06 0.77 8.03 -51.93 -0.42 0.36 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.43 5.34 -51.93 -0.28 0.16 16 33 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.58 4.10 -51.93 -0.21 0.37 16 38 H 0.07 0.65 7.34 -51.93 -0.38 0.27 16 39 H 0.09 0.56 4.34 -51.93 -0.23 0.33 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 44 H 0.39 5.60 8.81 -40.82 -0.36 5.24 16 45 H 0.17 4.91 5.92 -52.49 -0.31 4.60 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 47 H 0.14 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -38.78 373.33 -7.21 -45.99 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.79 Total: 10.16 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.12 Total: 0.00 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.41 Total: -53.38 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.32 Total: -22.85 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.78 -7.21 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139548216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.113 kcal (2) G-P(sol) polarization free energy of solvation -38.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds