Wall clock time and date at job start Tue Mar 31 2020 18:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46828 * 2 1 4 4 C 1.53002 * 109.46911 * 239.99997 * 2 1 3 5 5 C 1.50695 * 109.47125 * 120.00320 * 2 1 3 6 6 O 1.21279 * 120.00209 * 353.80134 * 5 2 1 7 7 N 1.34781 * 119.99848 * 173.81213 * 5 2 1 8 8 C 1.47423 * 125.64556 * 354.88674 * 7 5 2 9 9 C 1.54908 * 104.92449 * 155.84132 * 8 7 5 10 10 C 1.55445 * 101.45303 * 37.00525 * 9 8 7 11 11 C 1.47026 * 125.64622 * 174.91428 * 7 5 2 12 12 H 1.09000 * 109.88397 * 300.45038 * 11 7 5 13 13 C 1.50698 * 109.88131 * 61.46739 * 11 7 5 14 14 O 1.21311 * 120.00349 * 359.97438 * 13 11 7 15 15 N 1.34774 * 120.00093 * 180.02562 * 13 11 7 16 16 C 1.40590 * 120.00558 * 179.97438 * 15 13 11 17 17 C 1.40650 * 126.07823 * 359.68423 * 16 15 13 18 18 N 1.30916 * 108.38589 * 179.85504 * 17 16 15 19 19 N 1.40066 * 108.40497 * 0.40564 * 18 17 16 20 20 C 1.37323 * 126.06659 * 179.73861 * 19 18 17 21 21 H 1.08009 * 119.99642 * 180.02562 * 20 19 18 22 22 C 1.38987 * 120.00335 * 0.02562 * 20 19 18 23 23 N 1.31294 * 119.99741 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47180 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47014 * 120.00245 * 24 22 20 27 27 H 1.48501 * 109.46693 * 239.99712 * 24 22 20 28 28 C 1.35686 * 126.08601 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.46898 * 299.99666 * 1 2 3 30 30 H 1.08994 * 109.47426 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47077 * 172.27755 * 3 2 1 33 33 H 1.09002 * 109.47439 * 292.27513 * 3 2 1 34 34 H 1.09000 * 109.47447 * 52.27816 * 3 2 1 35 35 H 1.08994 * 109.47143 * 299.99903 * 4 2 1 36 36 H 1.09004 * 109.47194 * 59.99898 * 4 2 1 37 37 H 1.08997 * 109.47214 * 179.97438 * 4 2 1 38 38 H 1.09002 * 110.36346 * 274.73099 * 8 7 5 39 39 H 1.08992 * 110.36611 * 36.94960 * 8 7 5 40 40 H 1.09003 * 111.00326 * 155.13273 * 9 8 7 41 41 H 1.08997 * 111.00819 * 278.98419 * 9 8 7 42 42 H 1.09005 * 110.70881 * 206.14652 * 10 9 8 43 43 H 1.08996 * 110.86255 * 82.95843 * 10 9 8 44 44 H 0.97008 * 119.99455 * 359.97438 * 15 13 11 45 45 H 1.08002 * 125.81006 * 359.97438 * 17 16 15 46 46 H 0.97002 * 120.00082 * 180.02562 * 23 22 20 47 47 H 1.07991 * 126.24088 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 8 1.2501 -1.0722 2.0836 7 7 3.3511 -0.9437 1.3827 8 6 4.3956 -0.6558 0.3829 9 6 5.7005 -0.4994 1.2029 10 6 5.5047 -1.5794 2.3036 11 6 3.9860 -1.5278 2.5732 12 1 3.7851 -0.9041 3.4442 13 6 3.4561 -2.9192 2.8060 14 8 2.6264 -3.3860 2.0542 15 7 3.9032 -3.6446 3.8502 16 6 3.4084 -4.9425 4.0678 17 6 2.4460 -5.6042 3.2843 18 7 2.2442 -6.7928 3.7946 19 7 3.0595 -6.9329 4.9249 20 6 3.1311 -8.0370 5.7382 21 1 3.7969 -8.0391 6.5886 22 6 2.3467 -9.1520 5.4672 23 7 1.5376 -9.1496 4.4331 24 14 2.4436 -10.6536 6.5740 25 1 3.4240 -10.4047 7.6612 26 1 1.1071 -10.9210 7.1636 27 1 2.8770 -11.8290 5.7766 28 6 3.7704 -5.7774 5.0743 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1212 1.4457 0.1381 33 1 1.7938 1.9149 -0.9510 34 1 1.5683 1.9947 0.8129 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 4.4862 -1.4839 -0.3201 39 1 4.1680 0.2685 -0.1480 40 1 6.5753 -0.7173 0.5903 41 1 5.7701 0.4965 1.6403 42 1 6.0648 -1.3201 3.2021 43 1 5.7983 -2.5635 1.9384 44 1 4.5664 -3.2711 4.4517 45 1 1.9579 -5.2012 2.4091 46 1 0.9899 -9.9276 4.2441 47 1 4.4890 -5.5658 5.8521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139548216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:01 Heat of formation + Delta-G solvation = -4.941801 kcal Electronic energy + Delta-G solvation = -29694.508046 eV Core-core repulsion = 25685.558681 eV Total energy + Delta-G solvation = -4008.949365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.06524 -41.44897 -39.99927 -38.20469 -36.68547 -35.91816 -34.99400 -32.50854 -32.27431 -30.99455 -29.32341 -28.26198 -28.03629 -26.82091 -25.74187 -23.55759 -22.79096 -22.46970 -21.51675 -21.11239 -19.91251 -19.33730 -18.22328 -17.83232 -17.45629 -17.03620 -16.67794 -16.13181 -16.06632 -15.74827 -15.63073 -15.17427 -14.98107 -14.77535 -14.70323 -14.56528 -14.35538 -13.87706 -13.52966 -13.48245 -13.32600 -13.13229 -12.99845 -12.96203 -12.88601 -12.76701 -12.68921 -12.54568 -12.31617 -12.03763 -11.93419 -11.85193 -11.69641 -11.42057 -11.03701 -10.86607 -10.70290 -10.64466 -10.12760 -9.65335 -8.53719 -8.48857 -6.26481 1.20640 1.37727 1.53130 1.57105 1.59119 1.85011 1.93171 2.09173 2.38801 2.50335 2.89939 3.07189 3.38952 3.56152 3.63522 3.84814 3.87655 3.94427 4.12338 4.18751 4.29256 4.40617 4.50592 4.56351 4.59808 4.66154 4.74725 4.80323 4.85458 4.89712 4.91711 4.94049 4.97658 5.02867 5.05690 5.12049 5.19236 5.24622 5.27415 5.32051 5.34861 5.43170 5.47623 5.94154 6.29305 6.52244 6.71203 6.76965 7.23039 7.42660 7.47561 7.66119 8.51025 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.002707 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.803556 B =10342.751471 C =11164.875043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.136 4.136 4 C -0.151 4.151 5 C 0.528 3.472 6 O -0.582 6.582 7 N -0.602 5.602 8 C 0.079 3.921 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.124 3.876 12 H 0.107 0.893 13 C 0.483 3.517 14 O -0.565 6.565 15 N -0.617 5.617 16 C -0.040 4.040 17 C -0.065 4.065 18 N -0.311 5.311 19 N -0.168 5.168 20 C -0.353 4.353 21 H 0.144 0.856 22 C -0.010 4.010 23 N -0.827 5.827 24 Si 1.023 2.977 25 H -0.238 1.238 26 H -0.274 1.274 27 H -0.271 1.271 28 C -0.081 4.081 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.419 0.581 45 H 0.154 0.846 46 H 0.276 0.724 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 23.034 -7.739 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.193 4.193 4 C -0.208 4.208 5 C 0.319 3.681 6 O -0.460 6.460 7 N -0.336 5.336 8 C -0.042 4.042 9 C -0.154 4.154 10 C -0.156 4.156 11 C 0.016 3.984 12 H 0.125 0.875 13 C 0.270 3.730 14 O -0.443 6.443 15 N -0.263 5.263 16 C -0.146 4.146 17 C -0.240 4.240 18 N -0.144 5.144 19 N 0.063 4.937 20 C -0.484 4.484 21 H 0.161 0.839 22 C -0.221 4.221 23 N -0.456 5.456 24 Si 0.841 3.159 25 H -0.160 1.160 26 H -0.199 1.199 27 H -0.197 1.197 28 C -0.231 4.231 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.088 0.912 44 H 0.256 0.744 45 H 0.171 0.829 46 H 0.085 0.915 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.945 21.350 -8.084 25.317 hybrid contribution -0.241 -0.452 0.775 0.929 sum 10.704 20.898 -7.310 24.591 Atomic orbital electron populations 1.21672 0.92995 1.01061 1.02683 1.20813 0.97207 0.98028 0.92139 1.21964 1.02232 0.90951 1.04126 1.22190 1.03368 0.99155 0.96069 1.21106 0.80489 0.78054 0.88479 1.90708 1.55797 1.53005 1.46534 1.48326 1.06419 1.61243 1.17576 1.23068 0.87081 1.02505 0.91542 1.22919 0.96653 0.99694 0.96145 1.22800 0.88560 1.01268 1.03012 1.21646 0.96110 0.88881 0.91793 0.87487 1.21761 0.81922 0.88904 0.80423 1.90596 1.33741 1.72299 1.47657 1.42422 1.42856 1.11997 1.29035 1.17365 1.06429 0.89076 1.01707 1.23995 1.02864 0.93794 1.03318 1.78140 1.17630 1.17872 1.00714 1.44866 1.22754 1.09945 1.16134 1.20704 1.27312 0.91009 1.09351 0.83898 1.26966 0.93910 1.03127 0.98126 1.70433 1.19443 1.30251 1.25427 0.84494 0.79191 0.74716 0.77495 1.16025 1.19918 1.19660 1.22000 1.07435 0.88929 1.04764 0.93290 0.88819 0.95361 0.90014 0.88592 0.92740 0.95322 0.88689 0.89306 0.91672 0.86529 0.86802 0.87853 0.85616 0.91176 0.74387 0.82861 0.91472 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 7.78 71.98 0.56 -2.53 16 2 C -0.08 -1.72 0.75 -52.93 -0.04 -1.76 16 3 C -0.14 -1.74 8.28 71.98 0.60 -1.15 16 4 C -0.15 -2.77 8.13 71.98 0.59 -2.18 16 5 C 0.53 16.78 5.85 87.65 0.51 17.30 16 6 O -0.58 -25.71 14.97 13.55 0.20 -25.51 16 7 N -0.60 -15.12 2.83 -792.20 -2.24 -17.37 16 8 C 0.08 1.10 4.75 86.85 0.41 1.52 16 9 C -0.12 -0.91 7.11 32.09 0.23 -0.68 16 10 C -0.12 -1.65 6.42 31.88 0.20 -1.44 16 11 C 0.12 3.11 3.29 44.59 0.15 3.26 16 12 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 13 C 0.48 18.64 6.61 87.66 0.58 19.22 16 14 O -0.57 -28.40 12.04 13.45 0.16 -28.24 16 15 N -0.62 -23.01 5.40 -303.92 -1.64 -24.65 16 16 C -0.04 -1.96 6.90 37.73 0.26 -1.70 16 17 C -0.06 -3.89 10.85 85.42 0.93 -2.96 16 18 N -0.31 -20.08 10.40 -56.46 -0.59 -20.66 16 19 N -0.17 -9.79 3.74 -190.01 -0.71 -10.50 16 20 C -0.35 -19.37 10.25 84.01 0.86 -18.50 16 21 H 0.14 6.75 7.83 -2.91 -0.02 6.73 16 22 C -0.01 -0.55 5.50 84.95 0.47 -0.08 16 23 N -0.83 -49.98 11.81 21.66 0.26 -49.72 16 24 Si 1.02 39.94 29.55 68.60 2.03 41.97 16 25 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 26 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 27 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 28 C -0.08 -3.95 11.49 83.38 0.96 -2.99 16 29 H 0.05 1.30 8.03 -2.39 -0.02 1.28 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.75 5.34 -2.39 -0.01 0.74 16 33 H 0.10 0.74 8.13 -2.39 -0.02 0.72 16 34 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 35 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 1.27 4.10 -2.39 -0.01 1.26 16 38 H 0.07 1.04 7.34 -2.39 -0.02 1.02 16 39 H 0.12 0.96 4.34 -2.39 -0.01 0.95 16 40 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 1.23 7.85 -2.39 -0.02 1.22 16 44 H 0.42 11.09 8.81 -92.70 -0.82 10.27 16 45 H 0.15 9.64 5.92 -2.91 -0.02 9.62 16 46 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.19 7.20 8.06 -2.92 -0.02 7.18 16 Total: -1.00 -96.68 373.33 4.91 -91.77 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: 0.19 Total: 37.61 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 7.26 Total: 5.30 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.93 Total: -122.90 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: 0.36 Total: -53.75 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -96.68 4.91 -91.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139548216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.825 kcal (2) G-P(sol) polarization free energy of solvation -96.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds