Wall clock time and date at job start Tue Mar 31 2020 18:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 C 1.53000 * 109.47087 * 239.99506 * 2 1 3 5 5 C 1.50704 * 109.47284 * 119.99965 * 2 1 3 6 6 O 1.21285 * 119.99711 * 9.94294 * 5 2 1 7 7 N 1.34777 * 120.00222 * 189.94644 * 5 2 1 8 8 C 1.47418 * 125.64743 * 355.58714 * 7 5 2 9 9 C 1.54912 * 104.83398 * 204.16658 * 8 7 5 10 10 C 1.55398 * 101.66386 * 323.07410 * 9 8 7 11 11 C 1.47026 * 125.64913 * 175.63151 * 7 5 2 12 12 H 1.09006 * 109.87947 * 59.33141 * 11 7 5 13 13 C 1.50696 * 109.88058 * 298.32146 * 11 7 5 14 14 O 1.21306 * 120.00367 * 0.31539 * 13 11 7 15 15 N 1.34778 * 119.99924 * 180.31097 * 13 11 7 16 16 C 1.40588 * 120.00257 * 179.97438 * 15 13 11 17 17 C 1.40653 * 126.08185 * 359.97438 * 16 15 13 18 18 N 1.30907 * 108.38928 * 179.97438 * 17 16 15 19 19 N 1.40073 * 108.40714 * 0.02562 * 18 17 16 20 20 C 1.37318 * 126.07031 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00026 * 185.25748 * 20 19 18 22 22 C 1.38987 * 119.99913 * 5.26605 * 20 19 18 23 23 N 1.31301 * 119.99617 * 184.58461 * 22 20 19 24 24 Si 1.86798 * 120.00043 * 4.58267 * 22 20 19 25 25 H 1.48502 * 109.46790 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47071 * 60.00603 * 24 22 20 27 27 H 1.48493 * 109.46916 * 300.00232 * 24 22 20 28 28 C 1.35684 * 126.08447 * 180.24747 * 16 15 13 29 29 H 1.09001 * 109.46775 * 300.00260 * 1 2 3 30 30 H 1.08999 * 109.47017 * 59.99980 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47264 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47064 * 299.99991 * 3 2 1 34 34 H 1.09001 * 109.47381 * 60.00111 * 3 2 1 35 35 H 1.09002 * 109.47263 * 307.37643 * 4 2 1 36 36 H 1.09005 * 109.46843 * 67.37913 * 4 2 1 37 37 H 1.09001 * 109.47309 * 187.37158 * 4 2 1 38 38 H 1.08995 * 110.37035 * 323.00768 * 8 7 5 39 39 H 1.09004 * 110.36900 * 85.32694 * 8 7 5 40 40 H 1.08995 * 111.00437 * 81.06378 * 9 8 7 41 41 H 1.09001 * 111.00260 * 204.88345 * 9 8 7 42 42 H 1.08996 * 110.70267 * 277.05103 * 10 9 8 43 43 H 1.09005 * 110.85390 * 153.69452 * 10 9 8 44 44 H 0.97006 * 119.99554 * 0.02562 * 15 13 11 45 45 H 1.07995 * 125.80387 * 0.02562 * 17 16 15 46 46 H 0.96996 * 119.99921 * 354.96812 * 23 22 20 47 47 H 1.07998 * 126.24750 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2590 -1.3258 1.9336 7 7 3.3409 -0.6619 1.5496 8 6 4.3998 -0.0319 0.7403 9 6 5.7044 -0.7511 1.1652 10 6 5.4665 -0.9607 2.6865 11 6 3.9487 -1.2292 2.7622 12 1 3.7637 -2.3027 2.8021 13 6 3.3708 -0.5639 3.9846 14 8 2.5265 0.2987 3.8637 15 7 3.7920 -0.9273 5.2122 16 6 3.2533 -0.3063 6.3527 17 6 2.2746 0.7039 6.3614 18 7 2.0277 1.0289 7.6053 19 7 2.8360 0.2430 8.4366 20 6 2.8692 0.2875 9.8086 21 1 3.5922 -0.3038 10.3507 22 6 1.9721 1.0934 10.4997 23 7 2.0616 1.2059 11.8048 24 14 0.6394 2.0164 9.5717 25 1 -0.1801 2.7995 10.5312 26 1 -0.2278 1.0465 8.8559 27 1 1.2669 2.9375 8.5905 28 6 3.5887 -0.5710 7.6404 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5729 -1.7039 -1.3175 36 1 1.7883 -0.1370 -2.1343 37 1 3.1219 -0.8370 -1.1857 38 1 4.2092 -0.1879 -0.3215 39 1 4.4642 1.0333 0.9625 40 1 5.8081 -1.7074 0.6526 41 1 6.5745 -0.1188 0.9881 42 1 5.7273 -0.0616 3.2447 43 1 6.0288 -1.8198 3.0524 44 1 4.4674 -1.6169 5.3088 45 1 1.8058 1.1370 5.4902 46 1 2.7057 0.6711 12.2947 47 1 4.3162 -1.2958 7.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139548348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:06 Heat of formation + Delta-G solvation = 11.495147 kcal Electronic energy + Delta-G solvation = -29867.720009 eV Core-core repulsion = 25859.483404 eV Total energy + Delta-G solvation = -4008.236605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.00509 -40.06320 -38.76201 -37.24386 -35.74656 -34.37432 -33.41170 -31.69393 -30.74328 -30.00190 -28.11428 -27.63611 -27.17104 -25.07325 -24.32069 -22.40920 -21.88886 -21.13060 -20.15205 -19.80654 -18.86860 -18.09081 -17.15293 -16.87098 -16.31281 -15.87623 -15.17070 -14.99002 -14.89936 -14.69266 -14.14845 -13.96900 -13.86117 -13.61859 -13.55911 -13.44056 -13.14918 -13.09373 -12.62763 -12.37241 -12.36087 -12.29636 -11.95044 -11.91199 -11.79633 -11.69670 -11.67090 -11.18727 -11.08594 -10.88203 -10.78707 -10.70789 -10.05633 -9.91733 -9.62295 -9.46740 -9.41999 -8.65597 -8.47271 -8.24563 -7.30101 -6.99840 -4.44373 2.58429 2.72875 2.85489 3.13978 3.53250 3.59315 3.76340 3.93274 4.04210 4.12350 4.19064 4.30666 4.38226 4.41296 4.58404 4.60399 4.71571 4.88979 4.92837 4.97430 5.04697 5.08204 5.24416 5.35144 5.39172 5.40603 5.47741 5.52116 5.56450 5.61961 5.72790 5.74594 5.80273 5.87921 5.99322 6.07403 6.08241 6.14982 6.22521 6.67973 6.75840 6.94808 7.38065 7.43626 7.72823 8.01179 8.10028 8.22945 8.34764 8.72193 8.96796 9.23151 10.15204 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.003098 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.539430 B = 9034.736710 C =10038.311352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.154 4.154 4 C -0.145 4.145 5 C 0.548 3.452 6 O -0.521 6.521 7 N -0.601 5.601 8 C 0.090 3.910 9 C -0.132 4.132 10 C -0.125 4.125 11 C 0.123 3.877 12 H 0.098 0.902 13 C 0.495 3.505 14 O -0.517 6.517 15 N -0.627 5.627 16 C -0.048 4.048 17 C 0.007 3.993 18 N -0.359 5.359 19 N -0.150 5.150 20 C -0.378 4.378 21 H 0.113 0.887 22 C 0.039 3.961 23 N -0.833 5.833 24 Si 1.120 2.880 25 H -0.314 1.314 26 H -0.285 1.285 27 H -0.269 1.269 28 C -0.063 4.063 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.398 0.602 45 H 0.183 0.817 46 H 0.279 0.721 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 -4.962 -26.289 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.082 4.082 3 C -0.211 4.211 4 C -0.202 4.202 5 C 0.336 3.664 6 O -0.394 6.394 7 N -0.336 5.336 8 C -0.033 4.033 9 C -0.170 4.170 10 C -0.163 4.163 11 C 0.015 3.985 12 H 0.116 0.884 13 C 0.279 3.721 14 O -0.392 6.392 15 N -0.270 5.270 16 C -0.153 4.153 17 C -0.165 4.165 18 N -0.194 5.194 19 N 0.085 4.915 20 C -0.510 4.510 21 H 0.131 0.869 22 C -0.176 4.176 23 N -0.460 5.460 24 Si 0.951 3.049 25 H -0.245 1.245 26 H -0.212 1.212 27 H -0.195 1.195 28 C -0.216 4.216 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.231 0.769 45 H 0.199 0.801 46 H 0.090 0.910 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.018 -2.876 -24.981 25.856 hybrid contribution 2.414 -2.248 -0.337 3.315 sum 8.431 -5.124 -25.318 27.172 Atomic orbital electron populations 1.21669 0.91852 1.02871 1.02128 1.20709 0.97984 0.96400 0.93116 1.22159 1.02197 0.93821 1.02954 1.22013 1.01358 1.00749 0.96125 1.20182 0.79853 0.80078 0.86272 1.90726 1.54150 1.42292 1.52270 1.48097 1.06859 1.57953 1.20665 1.22747 0.86652 0.97629 0.96226 1.22860 0.97343 1.01526 0.95311 1.22720 0.92151 1.03905 0.97552 1.21405 0.93407 0.98796 0.84866 0.88421 1.20571 0.83295 0.84230 0.83974 1.90586 1.31328 1.31717 1.85581 1.42441 1.41378 1.39387 1.03826 1.17142 1.07161 1.05934 0.85060 1.23687 0.99408 0.98676 0.94729 1.76287 1.21295 1.20691 1.01113 1.44774 1.21557 1.19817 1.05401 1.21142 1.21695 1.31622 0.76537 0.86915 1.26975 0.99445 0.95315 0.95839 1.70917 1.34206 1.34254 1.06653 0.82586 0.73660 0.76933 0.71759 1.24487 1.21227 1.19531 1.21295 1.06474 1.04563 0.89225 0.91772 0.92119 0.91859 0.91189 0.91740 0.91592 0.92000 0.91325 0.91741 0.89369 0.90717 0.90231 0.89366 0.89663 0.88973 0.76871 0.80073 0.91010 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 7.82 37.15 0.29 -1.13 16 2 C -0.08 -0.84 0.75 -155.66 -0.12 -0.95 16 3 C -0.15 -1.43 8.15 37.15 0.30 -1.13 16 4 C -0.15 -1.07 8.32 37.16 0.31 -0.76 16 5 C 0.55 7.89 5.65 -10.98 -0.06 7.83 16 6 O -0.52 -9.98 15.50 -4.19 -0.06 -10.05 16 7 N -0.60 -7.15 2.81 -164.32 -0.46 -7.61 16 8 C 0.09 0.68 4.84 -2.53 -0.01 0.67 16 9 C -0.13 -0.73 7.09 -24.45 -0.17 -0.91 16 10 C -0.13 -0.95 6.41 -24.77 -0.16 -1.11 16 11 C 0.12 1.48 3.23 -68.10 -0.22 1.26 16 12 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 13 C 0.50 8.46 6.68 -10.99 -0.07 8.38 16 14 O -0.52 -11.02 12.34 -4.20 -0.05 -11.08 16 15 N -0.63 -10.58 5.40 -10.00 -0.05 -10.64 16 16 C -0.05 -1.06 6.90 -83.84 -0.58 -1.64 16 17 C 0.01 0.17 10.85 -17.03 -0.18 -0.01 16 18 N -0.36 -9.88 7.11 30.80 0.22 -9.66 16 19 N -0.15 -4.02 3.67 -11.41 -0.04 -4.06 16 20 C -0.38 -10.44 10.59 -14.82 -0.16 -10.60 16 21 H 0.11 3.00 8.05 -52.49 -0.42 2.58 16 22 C 0.04 1.10 5.50 -17.50 -0.10 1.00 16 23 N -0.83 -23.48 13.68 55.50 0.76 -22.72 16 24 Si 1.12 29.42 25.82 -169.99 -4.39 25.03 16 25 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 26 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 27 H -0.27 -7.14 6.65 56.52 0.38 -6.76 16 28 C -0.06 -1.43 11.49 -16.39 -0.19 -1.62 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.75 7.99 -51.93 -0.41 0.33 16 32 H 0.07 0.55 4.14 -51.93 -0.21 0.33 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.40 5.09 -51.93 -0.26 0.13 16 38 H 0.09 0.50 4.59 -51.93 -0.24 0.26 16 39 H 0.07 0.59 6.89 -51.93 -0.36 0.23 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.40 5.01 8.80 -40.82 -0.36 4.65 16 45 H 0.18 4.59 5.92 -52.49 -0.31 4.28 16 46 H 0.28 7.45 8.72 -40.82 -0.36 7.09 16 47 H 0.15 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -36.85 368.97 -6.46 -43.31 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.82 Total: 2.63 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.12 Total: -0.73 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.42 Total: -54.69 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.12 Total: -21.12 kcal Atomic # 14 Polarization: 29.42 SS G_CDS: -4.39 Total: 25.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.85 -6.46 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139548348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.809 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds