Wall clock time and date at job start Tue Mar 31 2020 18:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 H 1.08996 * 110.05353 * 53.57866 * 3 2 1 5 5 C 1.54378 * 110.06692 * 292.12275 * 3 2 1 6 6 C 1.54887 * 104.21511 * 217.14760 * 5 3 2 7 7 C 1.54888 * 102.74743 * 37.92838 * 6 5 3 8 8 C 1.53869 * 110.03485 * 174.99908 * 3 2 1 9 9 H 1.09002 * 110.03268 * 238.56956 * 8 3 2 10 10 N 1.46501 * 110.03042 * 359.95190 * 8 3 2 11 11 C 1.34778 * 119.99537 * 204.30824 * 10 8 3 12 12 O 1.21360 * 120.00627 * 0.02562 * 11 10 8 13 13 C 1.49343 * 119.99846 * 179.97438 * 11 10 8 14 14 O 1.21386 * 120.00228 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00422 * 179.97438 * 13 11 10 16 16 C 1.39930 * 120.00218 * 179.97438 * 15 13 11 17 17 C 1.40456 * 125.98296 * 0.02562 * 16 15 13 18 18 C 1.35213 * 107.87043 * 179.97438 * 17 16 15 19 19 N 1.34986 * 107.87472 * 359.97438 * 18 17 16 20 20 C 1.46502 * 125.97036 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.46762 * 125.00485 * 20 19 18 22 22 H 1.07992 * 120.00010 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99387 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00475 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99526 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47246 * 60.00011 * 25 23 21 27 27 H 1.48502 * 109.47074 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46915 * 300.00066 * 25 23 21 29 29 N 1.31273 * 125.97813 * 179.69617 * 16 15 13 30 30 H 1.08998 * 109.47306 * 300.00032 * 1 2 3 31 31 H 1.09003 * 109.47125 * 60.00513 * 1 2 3 32 32 H 1.09005 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47306 * 239.99968 * 2 1 3 34 34 H 1.09003 * 109.47125 * 119.99487 * 2 1 3 35 35 H 1.09001 * 110.49124 * 98.45760 * 5 3 2 36 36 H 1.08999 * 110.57569 * 335.88577 * 5 3 2 37 37 H 1.09004 * 110.75643 * 279.61384 * 6 5 3 38 38 H 1.08997 * 110.75371 * 156.24365 * 6 5 3 39 39 H 1.08998 * 110.48734 * 203.38147 * 7 6 5 40 40 H 1.08998 * 110.48660 * 80.73437 * 7 6 5 41 41 H 0.96992 * 120.00180 * 24.30698 * 10 8 3 42 42 H 0.97002 * 119.99188 * 0.02562 * 15 13 11 43 43 H 1.08010 * 126.06370 * 359.97438 * 17 16 15 44 44 H 1.07998 * 126.06561 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.46675 * 244.99927 * 20 19 18 46 46 H 1.08993 * 109.46852 * 5.00124 * 20 19 18 47 47 H 0.97006 * 120.00134 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9975 0.8239 5 6 1.7017 2.1240 -1.3433 6 6 2.9308 3.0201 -1.6353 7 6 4.1134 2.1490 -1.1440 8 6 3.5734 1.4595 0.1260 9 1 3.8691 2.0227 1.0111 10 7 4.0852 0.0893 0.2094 11 6 5.2740 -0.1513 0.7970 12 8 5.9203 0.7669 1.2575 13 6 5.7956 -1.5481 0.8825 14 8 5.1490 -2.4666 0.4224 15 7 6.9846 -1.7888 1.4697 16 6 7.4730 -3.0976 1.5503 17 6 6.8325 -4.2489 1.0634 18 6 7.6247 -5.3105 1.3346 19 7 8.7260 -4.8546 1.9681 20 6 9.8457 -5.6713 2.4428 21 6 11.1328 -5.1457 1.8613 22 1 11.1181 -4.2892 1.2036 23 6 12.3291 -5.7582 2.1690 24 7 12.3471 -6.8008 2.9703 25 14 13.9245 -5.1071 1.4476 26 1 14.1223 -3.6987 1.8746 27 1 15.0595 -5.9349 1.9289 28 1 13.8596 -5.1706 -0.0347 29 7 8.6129 -3.4636 2.0888 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 0.8013 2.7308 -1.2473 36 1 1.5768 1.3796 -2.1297 37 1 2.8743 3.9498 -1.0689 38 1 3.0168 3.2217 -2.7030 39 1 4.9731 2.7740 -0.9024 40 1 4.3794 1.4072 -1.8970 41 1 3.5686 -0.6446 -0.1583 42 1 7.5014 -1.0547 1.8371 43 1 5.8766 -4.2805 0.5614 44 1 7.4138 -6.3406 1.0880 45 1 9.8932 -5.6255 3.5309 46 1 9.7004 -6.7048 2.1287 47 1 13.1888 -7.2315 3.1871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150892746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:17 Heat of formation + Delta-G solvation = 3.861064 kcal Electronic energy + Delta-G solvation = -28084.408040 eV Core-core repulsion = 24075.840396 eV Total energy + Delta-G solvation = -4008.567644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19759 -40.45379 -39.30502 -38.09165 -35.19079 -33.93128 -33.60658 -33.33521 -31.04590 -29.42103 -28.54160 -28.02594 -26.91185 -24.99976 -23.47205 -22.89398 -21.54700 -21.11139 -20.44109 -19.71597 -19.52876 -18.37595 -16.99085 -16.61529 -16.58379 -16.05991 -15.99953 -15.85768 -15.19509 -14.93881 -14.74172 -14.48482 -14.31592 -13.98058 -13.63610 -13.61369 -13.06246 -12.95639 -12.74550 -12.41906 -12.30127 -12.20262 -11.90698 -11.78190 -11.52656 -11.44280 -11.39387 -11.07417 -11.05976 -10.90433 -10.88905 -10.85644 -10.55512 -10.27519 -10.03905 -9.58213 -9.55113 -9.46805 -8.64638 -8.23640 -7.58742 -6.26029 -4.31304 1.20266 2.06757 2.65839 3.02870 3.19756 3.25633 3.28815 3.34101 3.65891 3.83465 4.03129 4.13856 4.28457 4.30816 4.40481 4.72801 4.76644 4.86053 5.00508 5.05210 5.09243 5.13429 5.22268 5.23844 5.37729 5.42156 5.49064 5.54675 5.64419 5.66419 5.70911 5.74852 5.80889 5.86323 5.93535 6.07751 6.10352 6.31974 6.40777 6.78742 6.91566 7.01773 7.23903 7.36502 7.63151 7.68974 7.84619 7.95191 7.97249 8.53553 8.76967 9.34508 10.82700 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.002047 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.053704 B =13678.146711 C =14491.827271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.137 4.137 8 C 0.142 3.858 9 H 0.096 0.904 10 N -0.696 5.696 11 C 0.515 3.485 12 O -0.515 6.515 13 C 0.511 3.489 14 O -0.501 6.501 15 N -0.598 5.598 16 C 0.250 3.750 17 C -0.286 4.286 18 C 0.053 3.947 19 N -0.314 5.314 20 C 0.257 3.743 21 C -0.531 4.531 22 H 0.069 0.931 23 C 0.063 3.937 24 N -0.895 5.895 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.275 1.275 29 N -0.294 5.294 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.415 0.585 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.875 15.631 -7.764 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.118 4.118 4 H 0.103 0.897 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.175 4.175 8 C 0.037 3.963 9 H 0.114 0.886 10 N -0.353 5.353 11 C 0.295 3.705 12 O -0.390 6.390 13 C 0.291 3.709 14 O -0.374 6.374 15 N -0.246 5.246 16 C -0.003 4.003 17 C -0.317 4.317 18 C -0.097 4.097 19 N -0.096 5.096 20 C 0.140 3.860 21 C -0.569 4.569 22 H 0.087 0.913 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.736 3.264 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 N -0.126 5.126 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.255 0.745 42 H 0.260 0.740 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.597 15.807 -7.021 28.456 hybrid contribution 0.355 -0.068 -0.674 0.765 sum -22.242 15.739 -7.695 28.313 Atomic orbital electron populations 1.21754 0.95161 1.01938 1.01881 1.21659 0.96645 0.95809 1.02483 1.22116 0.93388 0.97159 0.99104 0.89683 1.22482 0.98106 0.98704 0.96342 1.22467 0.94300 0.98175 1.01276 1.22820 0.98581 0.99285 0.96851 1.21818 0.93109 0.81617 0.99730 0.88556 1.46127 1.20019 1.10809 1.58302 1.19936 0.82486 0.88828 0.79279 1.90785 1.57045 1.45290 1.45918 1.19967 0.81700 0.89476 0.79732 1.90703 1.56976 1.44725 1.44997 1.42005 1.19631 1.07133 1.55867 1.19019 0.94294 0.84655 1.02289 1.21511 1.05204 0.89446 1.15523 1.22581 0.88600 1.00091 0.98408 1.49174 1.16222 1.03009 1.41241 1.19795 0.81190 0.88601 0.96402 1.21207 0.90178 1.15439 1.30071 0.91306 1.24941 0.99457 0.94735 0.94898 1.69903 1.27609 1.20764 1.35012 0.86374 0.81602 0.79048 0.79414 1.19877 1.21031 1.20030 1.77413 1.16250 0.93008 1.25882 0.92686 0.92546 0.92500 0.91413 0.91105 0.91298 0.91125 0.91161 0.91155 0.90714 0.90849 0.74490 0.73955 0.82169 0.81236 0.93549 0.92380 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.77 37.15 0.36 -0.39 16 2 C -0.13 -0.74 3.93 -26.73 -0.11 -0.84 16 3 C -0.10 -0.56 2.93 -89.44 -0.26 -0.82 16 4 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 5 C -0.12 -0.58 5.54 -25.01 -0.14 -0.71 16 6 C -0.12 -0.67 6.91 -24.74 -0.17 -0.84 16 7 C -0.14 -1.01 6.53 -25.07 -0.16 -1.17 16 8 C 0.14 1.10 3.21 -66.81 -0.21 0.88 16 9 H 0.10 0.85 7.59 -51.93 -0.39 0.46 16 10 N -0.70 -6.53 4.40 -53.19 -0.23 -6.76 16 11 C 0.51 6.43 7.88 -11.64 -0.09 6.34 16 12 O -0.52 -7.41 16.14 5.49 0.09 -7.32 16 13 C 0.51 7.51 7.85 -11.63 -0.09 7.42 16 14 O -0.50 -7.86 13.60 5.47 0.07 -7.78 16 15 N -0.60 -9.85 5.43 -11.58 -0.06 -9.91 16 16 C 0.25 5.01 8.10 -154.55 -1.25 3.75 16 17 C -0.29 -5.44 9.60 -39.82 -0.38 -5.83 16 18 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 19 N -0.31 -7.20 3.67 -62.56 -0.23 -7.43 16 20 C 0.26 6.46 6.26 -5.19 -0.03 6.43 16 21 C -0.53 -14.69 9.23 -34.44 -0.32 -15.01 16 22 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 25 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 29 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.25 7.51 -51.93 -0.39 -0.14 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.39 7.12 -51.93 -0.37 0.02 16 34 H 0.07 0.48 7.41 -51.93 -0.38 0.09 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.35 7.77 -51.93 -0.40 -0.06 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.41 3.52 5.34 -40.82 -0.22 3.30 16 42 H 0.42 6.42 8.29 -40.82 -0.34 6.08 16 43 H 0.16 2.86 5.91 -52.48 -0.31 2.55 16 44 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -31.32 386.82 -8.58 -39.89 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.00 Total: 6.29 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.15 Total: 1.67 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.60 Total: -54.94 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.16 Total: -15.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.32 -8.58 -39.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150892746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.756 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds