Wall clock time and date at job start Tue Mar 31 2020 18:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 H 1.08996 * 110.05353 * 53.57866 * 3 2 1 5 5 C 1.54378 * 110.06692 * 292.12275 * 3 2 1 6 6 C 1.54887 * 104.21511 * 217.14760 * 5 3 2 7 7 C 1.54888 * 102.74743 * 37.92838 * 6 5 3 8 8 C 1.53869 * 110.03485 * 174.99908 * 3 2 1 9 9 H 1.09002 * 110.03268 * 238.56956 * 8 3 2 10 10 N 1.46501 * 110.03042 * 359.95190 * 8 3 2 11 11 C 1.34778 * 119.99537 * 204.30824 * 10 8 3 12 12 O 1.21360 * 120.00627 * 0.02562 * 11 10 8 13 13 C 1.49343 * 119.99846 * 179.97438 * 11 10 8 14 14 O 1.21386 * 120.00228 * 0.02562 * 13 11 10 15 15 N 1.34780 * 120.00422 * 179.97438 * 13 11 10 16 16 C 1.39930 * 120.00218 * 179.97438 * 15 13 11 17 17 C 1.40456 * 125.98296 * 0.02562 * 16 15 13 18 18 C 1.35213 * 107.87043 * 179.97438 * 17 16 15 19 19 N 1.34986 * 107.87472 * 359.97438 * 18 17 16 20 20 C 1.46502 * 125.97036 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.46762 * 125.00485 * 20 19 18 22 22 H 1.07992 * 120.00010 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99387 * 179.97438 * 21 20 19 24 24 N 1.31506 * 120.00475 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99526 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47246 * 60.00011 * 25 23 21 27 27 H 1.48502 * 109.47074 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46915 * 300.00066 * 25 23 21 29 29 N 1.31273 * 125.97813 * 179.69617 * 16 15 13 30 30 H 1.08998 * 109.47306 * 300.00032 * 1 2 3 31 31 H 1.09003 * 109.47125 * 60.00513 * 1 2 3 32 32 H 1.09005 * 109.47160 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47306 * 239.99968 * 2 1 3 34 34 H 1.09003 * 109.47125 * 119.99487 * 2 1 3 35 35 H 1.09001 * 110.49124 * 98.45760 * 5 3 2 36 36 H 1.08999 * 110.57569 * 335.88577 * 5 3 2 37 37 H 1.09004 * 110.75643 * 279.61384 * 6 5 3 38 38 H 1.08997 * 110.75371 * 156.24365 * 6 5 3 39 39 H 1.08998 * 110.48734 * 203.38147 * 7 6 5 40 40 H 1.08998 * 110.48660 * 80.73437 * 7 6 5 41 41 H 0.96992 * 120.00180 * 24.30698 * 10 8 3 42 42 H 0.97002 * 119.99188 * 0.02562 * 15 13 11 43 43 H 1.08010 * 126.06370 * 359.97438 * 17 16 15 44 44 H 1.07998 * 126.06561 * 179.97438 * 18 17 16 45 45 H 1.09003 * 109.46675 * 244.99927 * 20 19 18 46 46 H 1.08993 * 109.46852 * 5.00124 * 20 19 18 47 47 H 0.97006 * 120.00134 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9975 0.8239 5 6 1.7017 2.1240 -1.3433 6 6 2.9308 3.0201 -1.6353 7 6 4.1134 2.1490 -1.1440 8 6 3.5734 1.4595 0.1260 9 1 3.8691 2.0227 1.0111 10 7 4.0852 0.0893 0.2094 11 6 5.2740 -0.1513 0.7970 12 8 5.9203 0.7669 1.2575 13 6 5.7956 -1.5481 0.8825 14 8 5.1490 -2.4666 0.4224 15 7 6.9846 -1.7888 1.4697 16 6 7.4730 -3.0976 1.5503 17 6 6.8325 -4.2489 1.0634 18 6 7.6247 -5.3105 1.3346 19 7 8.7260 -4.8546 1.9681 20 6 9.8457 -5.6713 2.4428 21 6 11.1328 -5.1457 1.8613 22 1 11.1181 -4.2892 1.2036 23 6 12.3291 -5.7582 2.1690 24 7 12.3471 -6.8008 2.9703 25 14 13.9245 -5.1071 1.4476 26 1 14.1223 -3.6987 1.8746 27 1 15.0595 -5.9349 1.9289 28 1 13.8596 -5.1706 -0.0347 29 7 8.6129 -3.4636 2.0888 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 0.8013 2.7308 -1.2473 36 1 1.5768 1.3796 -2.1297 37 1 2.8743 3.9498 -1.0689 38 1 3.0168 3.2217 -2.7030 39 1 4.9731 2.7740 -0.9024 40 1 4.3794 1.4072 -1.8970 41 1 3.5686 -0.6446 -0.1583 42 1 7.5014 -1.0547 1.8371 43 1 5.8766 -4.2805 0.5614 44 1 7.4138 -6.3406 1.0880 45 1 9.8932 -5.6255 3.5309 46 1 9.7004 -6.7048 2.1287 47 1 13.1888 -7.2315 3.1871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150892746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:16 Heat of formation + Delta-G solvation = -15.111030 kcal Electronic energy + Delta-G solvation = -28085.230731 eV Core-core repulsion = 24075.840396 eV Total energy + Delta-G solvation = -4009.390335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48640 -41.69846 -40.29617 -39.06873 -36.56112 -35.39895 -34.72846 -34.07189 -32.84279 -31.02990 -29.36875 -28.61409 -28.49111 -26.29361 -24.65877 -23.96143 -22.81615 -21.94557 -21.61286 -21.05245 -20.19259 -19.52206 -18.70538 -18.22277 -17.84022 -17.17013 -16.98766 -16.89100 -16.43534 -16.16136 -15.87117 -15.57302 -15.38905 -15.21340 -14.70701 -14.57847 -14.23832 -14.08373 -13.88246 -13.73049 -13.58488 -13.29053 -13.02389 -12.79822 -12.73276 -12.62087 -12.31170 -12.23848 -12.14939 -11.91256 -11.88981 -11.66255 -11.53396 -11.44908 -11.38761 -11.33765 -10.80121 -10.72685 -10.29804 -9.84548 -9.22762 -8.34234 -6.47768 0.03192 0.85980 1.12949 1.37900 1.39855 1.48477 1.73321 1.84393 2.24685 2.33603 2.59296 2.98067 3.22317 3.50749 3.63373 3.81127 3.90435 4.21330 4.23700 4.28941 4.37353 4.47983 4.51979 4.62456 4.66809 4.76053 4.79213 4.83072 4.87591 4.92290 4.94167 4.96799 5.02245 5.04837 5.17281 5.24239 5.26514 5.31669 5.38634 5.45537 5.52529 5.55239 5.74329 5.77332 5.85860 6.15180 6.24739 6.54913 6.63154 6.78293 6.95554 7.21990 8.73379 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023582 B = 0.002047 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.053704 B =13678.146711 C =14491.827271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.092 4.092 4 H 0.093 0.907 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.138 4.138 8 C 0.137 3.863 9 H 0.086 0.914 10 N -0.678 5.678 11 C 0.521 3.479 12 O -0.536 6.536 13 C 0.516 3.484 14 O -0.507 6.507 15 N -0.601 5.601 16 C 0.257 3.743 17 C -0.287 4.287 18 C 0.061 3.939 19 N -0.339 5.339 20 C 0.271 3.729 21 C -0.549 4.549 22 H 0.051 0.949 23 C 0.019 3.981 24 N -0.919 5.919 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.273 1.273 28 H -0.269 1.269 29 N -0.341 5.341 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.421 0.579 42 H 0.427 0.573 43 H 0.177 0.823 44 H 0.208 0.792 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.483 16.427 -9.172 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.111 4.111 4 H 0.111 0.889 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.176 4.176 8 C 0.033 3.967 9 H 0.105 0.895 10 N -0.333 5.333 11 C 0.301 3.699 12 O -0.413 6.413 13 C 0.297 3.703 14 O -0.380 6.380 15 N -0.250 5.250 16 C 0.003 3.997 17 C -0.318 4.318 18 C -0.088 4.088 19 N -0.122 5.122 20 C 0.153 3.847 21 C -0.588 4.588 22 H 0.070 0.930 23 C -0.181 4.181 24 N -0.557 5.557 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.197 1.197 28 H -0.194 1.194 29 N -0.173 5.173 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.262 0.738 42 H 0.266 0.734 43 H 0.194 0.806 44 H 0.224 0.776 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.264 16.614 -8.452 30.597 hybrid contribution 0.702 -0.263 -0.268 0.796 sum -23.563 16.350 -8.720 29.976 Atomic orbital electron populations 1.21734 0.94344 1.02012 1.02425 1.21653 0.97364 0.95665 1.01990 1.22100 0.91403 0.97420 1.00145 0.88873 1.22473 0.98331 0.98704 0.95622 1.22458 0.93414 0.98085 1.01754 1.22802 0.99124 0.99309 0.96385 1.22029 0.94739 0.80274 0.99657 0.89542 1.46162 1.18617 1.11977 1.56561 1.19525 0.83246 0.87340 0.79820 1.90787 1.57882 1.45311 1.47339 1.20400 0.80843 0.90460 0.78639 1.90679 1.56982 1.45352 1.45017 1.42125 1.20358 1.06041 1.56483 1.19336 0.93441 0.86262 1.00610 1.21752 1.05629 0.88968 1.15468 1.23253 0.87011 1.01991 0.96522 1.48920 1.16901 1.03101 1.43238 1.19390 0.81413 0.89061 0.94862 1.21363 0.91860 1.15218 1.30312 0.93023 1.25714 1.02427 0.94878 0.95106 1.69976 1.28630 1.21482 1.35629 0.85431 0.78003 0.78316 0.78870 1.20070 1.19728 1.19419 1.77326 1.18252 0.93465 1.28216 0.92491 0.91654 0.92709 0.91274 0.92231 0.89858 0.90855 0.90569 0.90426 0.91928 0.91382 0.73754 0.73437 0.80626 0.77577 0.95931 0.91880 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.77 71.98 0.70 -0.48 16 2 C -0.13 -1.25 3.93 30.59 0.12 -1.13 16 3 C -0.09 -0.85 2.93 -10.03 -0.03 -0.88 16 4 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.11 -0.80 5.54 31.71 0.18 -0.63 16 6 C -0.12 -1.03 6.91 31.88 0.22 -0.81 16 7 C -0.14 -1.87 6.53 31.67 0.21 -1.66 16 8 C 0.14 1.96 3.21 45.72 0.15 2.11 16 9 H 0.09 1.46 7.59 -2.39 -0.02 1.45 16 10 N -0.68 -11.99 4.40 -440.54 -1.94 -13.93 16 11 C 0.52 12.72 7.88 87.24 0.69 13.41 16 12 O -0.54 -15.32 16.14 -3.28 -0.05 -15.38 16 13 C 0.52 14.81 7.85 87.24 0.69 15.49 16 14 O -0.51 -15.26 13.60 -3.36 -0.05 -15.31 16 15 N -0.60 -19.77 5.43 -308.89 -1.68 -21.45 16 16 C 0.26 10.31 8.10 133.40 1.08 11.39 16 17 C -0.29 -10.66 9.60 22.11 0.21 -10.45 16 18 C 0.06 2.29 11.43 83.51 0.95 3.25 16 19 N -0.34 -15.75 3.67 -351.85 -1.29 -17.04 16 20 C 0.27 13.94 6.26 85.63 0.54 14.48 16 21 C -0.55 -31.00 9.23 25.60 0.24 -30.76 16 22 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 23 C 0.02 1.07 5.46 84.66 0.46 1.53 16 24 N -0.92 -51.92 13.29 21.45 0.28 -51.63 16 25 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 N -0.34 -16.06 12.42 -54.54 -0.68 -16.74 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.41 7.51 -2.39 -0.02 0.40 16 32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.07 0.65 7.12 -2.39 -0.02 0.64 16 34 H 0.06 0.72 7.41 -2.39 -0.02 0.70 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.51 7.77 -2.39 -0.02 0.49 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.00 8.05 -2.39 -0.02 0.98 16 41 H 0.42 6.55 5.34 -92.71 -0.49 6.05 16 42 H 0.43 13.18 8.29 -92.71 -0.77 12.41 16 43 H 0.18 5.94 5.91 -2.91 -0.02 5.92 16 44 H 0.21 5.93 8.06 -2.91 -0.02 5.90 16 45 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 47 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -67.27 386.82 2.77 -64.51 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.26 Total: 26.24 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.40 Total: 14.86 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.30 Total: -120.79 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.10 Total: -30.69 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.27 2.77 -64.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150892746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.394 kcal (2) G-P(sol) polarization free energy of solvation -67.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds