Wall clock time and date at job start Tue Mar 31 2020 19:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47316 * 2 1 4 4 H 1.08997 * 109.46938 * 53.54358 * 3 2 1 5 5 C 1.50698 * 109.46791 * 173.53886 * 3 2 1 6 6 H 1.08003 * 119.99999 * 114.82181 * 5 3 2 7 7 C 1.37883 * 120.00502 * 294.81518 * 5 3 2 8 8 N 1.31511 * 119.99940 * 162.73898 * 7 5 3 9 9 Si 1.86798 * 119.99558 * 342.74161 * 7 5 3 10 10 H 1.48507 * 109.47076 * 269.99407 * 9 7 5 11 11 H 1.48494 * 109.47584 * 29.99425 * 9 7 5 12 12 H 1.48498 * 109.46897 * 149.99791 * 9 7 5 13 13 N 1.46497 * 109.47154 * 293.54164 * 3 2 1 14 14 C 1.34770 * 120.00297 * 85.00032 * 13 3 2 15 15 O 1.21602 * 119.99780 * 359.97438 * 14 13 3 16 16 N 1.34772 * 120.00373 * 180.02562 * 14 13 3 17 17 C 1.40201 * 120.00464 * 184.11229 * 16 14 13 18 18 C 1.38857 * 120.50596 * 336.16225 * 17 16 14 19 19 C 1.38817 * 118.43920 * 179.97438 * 18 17 16 20 20 C 1.38028 * 119.38728 * 359.97438 * 19 18 17 21 21 N 1.32018 * 120.98692 * 0.02562 * 20 19 18 22 22 C 1.32294 * 121.69249 * 359.70082 * 21 20 19 23 23 N 1.39201 * 119.74710 * 180.30919 * 22 21 20 24 24 C 1.47021 * 110.99740 * 109.09791 * 23 22 21 25 25 C 1.53098 * 109.25655 * 177.61194 * 24 23 22 26 26 O 1.43013 * 109.26112 * 56.84607 * 25 24 23 27 27 C 1.43009 * 113.74272 * 301.33085 * 26 25 24 28 28 C 1.47018 * 111.00163 * 345.46763 * 23 22 21 29 29 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47059 * 300.00336 * 1 2 3 31 31 H 1.09004 * 109.47100 * 59.99923 * 1 2 3 32 32 H 1.08999 * 109.47563 * 240.00072 * 2 1 3 33 33 H 1.09004 * 109.47100 * 120.00077 * 2 1 3 34 34 H 0.96997 * 120.00221 * 354.91742 * 8 7 5 35 35 H 0.97008 * 119.99775 * 265.00008 * 13 3 2 36 36 H 0.97002 * 119.99690 * 4.11296 * 16 14 13 37 37 H 1.07997 * 120.77993 * 359.97438 * 18 17 16 38 38 H 1.08004 * 120.30180 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.50660 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.50751 * 297.54136 * 24 23 22 41 41 H 1.08996 * 109.50595 * 57.67908 * 24 23 22 42 42 H 1.09008 * 109.50486 * 296.91530 * 25 24 23 43 43 H 1.08999 * 109.54112 * 176.80779 * 25 24 23 44 44 H 1.08995 * 109.50498 * 298.73626 * 27 26 25 45 45 H 1.09001 * 109.54556 * 178.61905 * 27 26 25 46 46 H 1.08997 * 109.50649 * 302.32503 * 28 23 22 47 47 H 1.09005 * 109.50624 * 62.41146 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5854 1.9886 0.8265 5 6 3.5385 1.4454 0.1599 6 1 4.1663 1.8069 -0.6411 7 6 4.1081 0.9866 1.3287 8 7 5.3835 0.6673 1.3575 9 14 3.0680 0.8185 2.8712 10 1 3.1133 2.0884 3.6397 11 1 1.6639 0.5197 2.4914 12 1 3.6000 -0.2862 3.7090 13 7 1.6827 2.0868 -1.2662 14 6 0.4687 2.6526 -1.4154 15 8 -0.3304 2.6280 -0.4991 16 7 0.1397 3.2449 -2.5805 17 6 -1.0888 3.9084 -2.7073 18 6 -2.1580 3.5751 -1.8865 19 6 -3.3546 4.2599 -2.0487 20 6 -3.4465 5.2440 -3.0121 21 7 -2.4148 5.5420 -3.7800 22 6 -1.2541 4.9192 -3.6570 23 7 -0.1909 5.2704 -4.4840 24 6 0.8520 5.9798 -3.7287 25 6 2.0253 6.2937 -4.6607 26 8 1.5519 7.0544 -5.7754 27 6 0.5357 6.3932 -6.5338 28 6 -0.6527 6.0803 -5.6208 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.9062 0.6839 0.5406 35 1 2.3200 2.1062 -1.9973 36 1 0.7530 3.2122 -3.3313 37 1 -2.0609 2.8013 -1.1394 38 1 -4.2054 4.0253 -1.4261 39 1 -4.3765 5.7783 -3.1397 40 1 0.4447 6.9092 -3.3307 41 1 1.1975 5.3518 -2.9075 42 1 2.4666 5.3626 -5.0166 43 1 2.7766 6.8692 -4.1200 44 1 0.9337 5.4651 -6.9441 45 1 0.2088 7.0404 -7.3477 46 1 -1.4057 5.5257 -6.1807 47 1 -1.0848 7.0110 -5.2529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157259803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:55 Heat of formation + Delta-G solvation = -34.706300 kcal Electronic energy + Delta-G solvation = -29970.396629 eV Core-core repulsion = 25960.156579 eV Total energy + Delta-G solvation = -4010.240050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32824 -41.01279 -39.93369 -37.53443 -36.82677 -35.82784 -34.53514 -33.37525 -32.42335 -32.19074 -30.74692 -28.99954 -27.77169 -25.64104 -24.57567 -24.11789 -23.62130 -22.43878 -21.55800 -21.45625 -20.24757 -19.31190 -18.70289 -18.34489 -17.44891 -17.14081 -17.00463 -16.57168 -16.36027 -16.12266 -16.07626 -15.69045 -15.48201 -15.12207 -15.05288 -14.67402 -14.48733 -14.37426 -14.30468 -13.94683 -13.63266 -13.45583 -13.28107 -12.65493 -12.62933 -12.49270 -12.43486 -12.34814 -12.06057 -11.73274 -11.66779 -11.40628 -11.32702 -11.11063 -11.05285 -10.62062 -10.53814 -10.49283 -10.01729 -9.78232 -8.88970 -8.77852 -6.42527 0.05219 0.28011 1.50077 1.50470 1.60854 1.72123 2.10186 2.29320 2.44908 2.83286 2.87165 3.01696 3.25096 3.48899 3.79198 3.82578 3.94845 4.04693 4.12273 4.15797 4.20878 4.31236 4.34613 4.42022 4.42436 4.50933 4.56163 4.65761 4.72177 4.85674 4.87396 4.93215 4.96818 5.12202 5.18841 5.23948 5.29968 5.31568 5.50212 5.56265 5.58064 5.63225 5.68924 6.01581 6.05601 6.08892 6.09989 6.54705 6.90993 7.06292 7.30037 7.54883 8.60739 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.003575 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.406245 B = 7831.103877 C = 9346.153549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.272 3.728 4 H 0.027 0.973 5 C -0.613 4.613 6 H 0.041 0.959 7 C -0.001 4.001 8 N -0.928 5.928 9 Si 1.068 2.932 10 H -0.279 1.279 11 H -0.245 1.245 12 H -0.282 1.282 13 N -0.710 5.710 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.664 5.664 17 C 0.119 3.881 18 C -0.103 4.103 19 C -0.159 4.159 20 C 0.087 3.913 21 N -0.507 5.507 22 C 0.255 3.745 23 N -0.477 5.477 24 C 0.023 3.977 25 C 0.067 3.933 26 O -0.399 6.399 27 C 0.061 3.939 28 C 0.037 3.963 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.260 0.740 35 H 0.400 0.600 36 H 0.419 0.581 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.188 0.812 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.122 0.878 46 H 0.093 0.907 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 9.100 -14.430 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.167 3.833 4 H 0.045 0.955 5 C -0.651 4.651 6 H 0.059 0.941 7 C -0.202 4.202 8 N -0.563 5.563 9 Si 0.890 3.110 10 H -0.205 1.205 11 H -0.168 1.168 12 H -0.208 1.208 13 N -0.362 5.362 14 C 0.398 3.602 15 O -0.481 6.481 16 N -0.312 5.312 17 C 0.018 3.982 18 C -0.131 4.131 19 C -0.180 4.180 20 C -0.071 4.071 21 N -0.220 5.220 22 C 0.021 3.979 23 N -0.198 5.198 24 C -0.104 4.104 25 C -0.010 4.010 26 O -0.317 6.317 27 C -0.015 4.015 28 C -0.090 4.090 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.235 0.765 36 H 0.257 0.743 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.140 0.860 46 H 0.111 0.889 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.706 9.054 -12.863 22.229 hybrid contribution 0.780 0.022 -1.196 1.428 sum -14.927 9.076 -14.059 22.424 Atomic orbital electron populations 1.21741 0.95487 1.00181 1.01421 1.22182 0.95426 0.98367 1.00957 1.18710 0.93423 0.89393 0.81780 0.95503 1.22250 0.91457 1.47345 1.04040 0.94059 1.26733 0.97351 0.91934 1.04152 1.70925 1.09197 1.44665 1.31506 0.83791 0.76247 0.77673 0.73289 1.20524 1.16843 1.20794 1.45287 1.13688 1.59017 1.18208 1.16101 0.83047 0.78642 0.82444 1.90774 1.50359 1.65301 1.41708 1.42456 1.18935 1.55742 1.14033 1.18212 0.86535 0.94320 0.99147 1.22253 0.91219 1.00741 0.98903 1.22334 0.98321 0.97350 0.99953 1.22979 0.97179 0.95896 0.91088 1.67650 1.00428 1.26370 1.27542 1.19508 0.91317 0.92735 0.94307 1.59746 1.08716 1.42832 1.08513 1.22894 0.92978 0.97147 0.97366 1.22752 0.94134 0.97464 0.86615 1.87985 1.56416 1.45065 1.42282 1.22907 0.86457 0.98816 0.93360 1.22629 0.98311 0.96737 0.91317 0.92807 0.93953 0.93344 0.92847 0.92822 0.93104 0.76549 0.74325 0.82821 0.81907 0.79465 0.94190 0.89775 0.90928 0.86765 0.91440 0.86027 0.88891 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.54 71.98 0.62 -4.21 16 2 C -0.13 -5.39 4.91 30.59 0.15 -5.24 16 3 C 0.27 12.16 1.78 44.25 0.08 12.24 16 4 H 0.03 1.32 6.16 -2.39 -0.01 1.31 16 5 C -0.61 -31.94 9.01 25.60 0.23 -31.71 16 6 H 0.04 2.28 7.96 -2.91 -0.02 2.25 16 7 C 0.00 -0.03 5.30 84.66 0.45 0.42 16 8 N -0.93 -54.83 13.70 21.45 0.29 -54.54 16 9 Si 1.07 48.78 26.20 68.60 1.80 50.58 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.24 -10.27 5.65 99.48 0.56 -9.71 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.71 -26.32 5.04 -461.41 -2.33 -28.65 16 14 C 0.70 24.44 7.10 179.06 1.27 25.71 16 15 O -0.60 -24.05 10.38 -4.04 -0.04 -24.09 16 16 N -0.66 -18.64 4.07 -316.35 -1.29 -19.93 16 17 C 0.12 3.34 6.28 38.30 0.24 3.58 16 18 C -0.10 -2.87 8.92 22.56 0.20 -2.67 16 19 C -0.16 -3.35 10.10 22.36 0.23 -3.12 16 20 C 0.09 1.73 11.17 84.62 0.94 2.67 16 21 N -0.51 -12.26 8.83 -192.71 -1.70 -13.97 16 22 C 0.25 6.53 6.10 133.16 0.81 7.35 16 23 N -0.48 -10.58 4.17 -700.21 -2.92 -13.50 16 24 C 0.02 0.51 5.28 86.31 0.46 0.96 16 25 C 0.07 1.25 7.01 72.01 0.50 1.75 16 26 O -0.40 -8.13 10.83 -148.98 -1.61 -9.75 16 27 C 0.06 0.97 7.01 72.02 0.50 1.48 16 28 C 0.04 0.71 4.86 86.31 0.42 1.13 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.64 7.93 -2.38 -0.02 1.62 16 31 H 0.05 1.77 5.61 -2.38 -0.01 1.76 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 2.31 5.23 -2.38 -0.01 2.30 16 34 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 35 H 0.40 13.18 8.54 -92.70 -0.79 12.39 16 36 H 0.42 9.97 7.93 -92.71 -0.73 9.23 16 37 H 0.15 4.96 5.50 -2.91 -0.02 4.94 16 38 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 2.01 6.53 -2.39 -0.02 2.00 16 42 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 47 H 0.05 1.08 7.82 -2.38 -0.02 1.07 16 Total: -1.00 -65.67 365.59 -1.39 -67.05 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.69 Total: 36.44 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 7.10 Total: 10.34 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -7.94 Total: -130.57 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.65 Total: -33.84 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 1.80 Total: 50.58 kcal Total: -65.67 -1.39 -67.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157259803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.346 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds