Wall clock time and date at job start Tue Mar 31 2020 19:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47586 * 2 1 4 4 H 1.09003 * 109.87326 * 54.48506 * 3 2 1 5 5 C 1.54324 * 109.88486 * 293.31104 * 3 2 1 6 6 H 1.09000 * 110.71500 * 336.75300 * 5 3 2 7 7 C 1.53000 * 110.71991 * 99.84412 * 5 3 2 8 8 C 1.55150 * 102.94172 * 218.38819 * 5 3 2 9 9 C 1.54694 * 101.67940 * 35.33484 * 8 5 3 10 10 N 1.47021 * 109.88349 * 175.49932 * 3 2 1 11 11 C 1.34777 * 125.65185 * 298.32532 * 10 3 2 12 12 O 1.21360 * 119.99711 * 355.06018 * 11 10 3 13 13 C 1.49337 * 120.00212 * 175.33751 * 11 10 3 14 14 O 1.21380 * 119.99954 * 359.72805 * 13 11 10 15 15 N 1.34776 * 119.99853 * 179.72001 * 13 11 10 16 16 C 1.39936 * 120.00047 * 179.97438 * 15 13 11 17 17 C 1.40467 * 125.97457 * 359.72283 * 16 15 13 18 18 C 1.35217 * 107.86118 * 179.88429 * 17 16 15 19 19 N 1.34988 * 107.87882 * 0.36828 * 18 17 16 20 20 C 1.46502 * 125.97088 * 179.78235 * 19 18 17 21 21 C 1.50706 * 109.46764 * 125.00545 * 20 19 18 22 22 H 1.07999 * 119.99727 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99596 * 179.97438 * 21 20 19 24 24 N 1.31519 * 120.00158 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99780 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47097 * 89.99729 * 25 23 21 27 27 H 1.48496 * 109.47042 * 209.99996 * 25 23 21 28 28 H 1.48505 * 109.46873 * 329.99606 * 25 23 21 29 29 N 1.31264 * 125.98404 * 180.02562 * 16 15 13 30 30 H 1.09009 * 109.46776 * 66.14146 * 1 2 3 31 31 H 1.08993 * 109.47409 * 186.13937 * 1 2 3 32 32 H 1.09005 * 109.47163 * 306.14771 * 1 2 3 33 33 H 1.09005 * 109.46842 * 240.00008 * 2 1 3 34 34 H 1.09004 * 109.46870 * 120.00368 * 2 1 3 35 35 H 1.09000 * 109.46870 * 60.00519 * 7 5 3 36 36 H 1.09001 * 109.46799 * 179.97438 * 7 5 3 37 37 H 1.08998 * 109.47324 * 300.00280 * 7 5 3 38 38 H 1.09001 * 111.00473 * 153.57578 * 8 5 3 39 39 H 1.08998 * 111.00357 * 277.42457 * 8 5 3 40 40 H 1.09006 * 110.39113 * 204.36303 * 9 8 5 41 41 H 1.09006 * 110.23598 * 82.11323 * 9 8 5 42 42 H 0.97000 * 120.00172 * 0.02562 * 15 13 11 43 43 H 1.07991 * 126.06842 * 0.03284 * 17 16 15 44 44 H 1.08009 * 126.06031 * 180.11964 * 18 17 16 45 45 H 1.08998 * 109.47171 * 244.99962 * 20 19 18 46 46 H 1.08999 * 109.47094 * 5.00584 * 20 19 18 47 47 H 0.96998 * 119.99635 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6022 1.9903 0.8344 5 6 1.6737 2.1288 -1.3328 6 1 1.5180 1.3885 -2.1176 7 6 0.4321 3.0072 -1.1659 8 6 2.9262 2.9934 -1.6342 9 6 4.0643 2.0939 -1.0968 10 7 3.5062 1.4543 0.1085 11 6 4.2215 0.9664 1.1414 12 8 3.6533 0.5453 2.1276 13 6 5.7133 0.9498 1.0749 14 8 6.2815 1.3712 0.0885 15 7 6.4286 0.4672 2.1101 16 6 7.8265 0.4511 2.0477 17 6 8.6095 0.8991 0.9710 18 6 9.9086 0.7175 1.2992 19 7 9.9519 0.1682 2.5315 20 6 11.1641 -0.1977 3.2684 21 6 11.1560 0.4777 4.6156 22 1 10.3307 1.1161 4.8946 23 6 12.2022 0.2807 5.4917 24 7 13.2074 -0.4962 5.1516 25 14 12.1919 1.1174 7.1619 26 1 11.5224 0.2367 8.1526 27 1 13.5887 1.3767 7.5942 28 1 11.4563 2.4039 7.0665 29 7 8.6353 0.0096 2.9825 30 1 -0.3633 0.4157 -0.9399 31 1 -0.3634 -1.0217 0.1099 32 1 -0.3634 0.6062 0.8299 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.6280 3.7745 -0.4170 36 1 0.1922 3.4816 -2.1174 37 1 -0.4079 2.3916 -0.8442 38 1 3.0340 3.1649 -2.7052 39 1 2.8892 3.9375 -1.0908 40 1 4.9347 2.6969 -0.8379 41 1 4.3307 1.3400 -1.8376 42 1 5.9745 0.1302 2.8983 43 1 8.2397 1.3169 0.0464 44 1 10.7606 0.9642 0.6828 45 1 11.1942 -1.2788 3.4042 46 1 12.0414 0.1226 2.7066 47 1 13.9435 -0.6345 5.7679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186542797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:00 Heat of formation + Delta-G solvation = -6.233722 kcal Electronic energy + Delta-G solvation = -28493.445010 eV Core-core repulsion = 24484.439624 eV Total energy + Delta-G solvation = -4009.005386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.52048 -41.77883 -40.26031 -38.96715 -36.51026 -35.36046 -34.66495 -33.57799 -32.84469 -31.03360 -29.89132 -28.95543 -28.07089 -26.12088 -24.74525 -23.78822 -23.14392 -22.49252 -21.66688 -21.06935 -20.50128 -18.81336 -18.69315 -18.27913 -17.91721 -17.46842 -16.94411 -16.71649 -16.31354 -15.90833 -15.78115 -15.62649 -15.08787 -14.88003 -14.65272 -14.49372 -14.25219 -13.98863 -13.88071 -13.77645 -13.59442 -13.40144 -13.02517 -12.92445 -12.79800 -12.75903 -12.60871 -12.53734 -12.32392 -12.15125 -12.02124 -11.76069 -11.66176 -11.52908 -11.44210 -11.22556 -10.74061 -10.62843 -9.92827 -9.82983 -9.22631 -8.34972 -6.48406 0.02152 0.79504 1.12365 1.36822 1.38333 1.49045 1.71485 1.76955 2.23142 2.31868 2.45847 2.97278 3.07352 3.51952 3.58682 3.79649 3.89951 4.09443 4.18739 4.20837 4.31278 4.42189 4.50270 4.58613 4.61836 4.73031 4.80631 4.82661 4.86235 4.89288 4.91001 4.97648 5.01787 5.07434 5.09996 5.13939 5.19462 5.24079 5.32838 5.43916 5.51615 5.54827 5.74834 5.76807 5.89658 6.08948 6.24049 6.44707 6.62709 6.73069 6.95086 7.21434 8.72868 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002138 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.324904 B =13091.996818 C =13514.070671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.133 3.867 4 H 0.075 0.925 5 C -0.090 4.090 6 H 0.102 0.898 7 C -0.143 4.143 8 C -0.124 4.124 9 C 0.091 3.909 10 N -0.581 5.581 11 C 0.529 3.471 12 O -0.540 6.540 13 C 0.518 3.482 14 O -0.498 6.498 15 N -0.602 5.602 16 C 0.259 3.741 17 C -0.286 4.286 18 C 0.061 3.939 19 N -0.339 5.339 20 C 0.271 3.729 21 C -0.548 4.548 22 H 0.051 0.949 23 C 0.019 3.981 24 N -0.919 5.919 25 Si 0.970 3.030 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.273 1.273 29 N -0.343 5.343 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.426 0.574 43 H 0.177 0.823 44 H 0.208 0.792 45 H 0.023 0.977 46 H 0.064 0.936 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.184 6.775 -18.206 31.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.031 3.969 4 H 0.093 0.907 5 C -0.109 4.109 6 H 0.120 0.880 7 C -0.200 4.200 8 C -0.162 4.162 9 C -0.030 4.030 10 N -0.313 5.313 11 C 0.311 3.689 12 O -0.418 6.418 13 C 0.299 3.701 14 O -0.371 6.371 15 N -0.252 5.252 16 C 0.005 3.995 17 C -0.317 4.317 18 C -0.088 4.088 19 N -0.122 5.122 20 C 0.153 3.847 21 C -0.587 4.587 22 H 0.069 0.931 23 C -0.181 4.181 24 N -0.557 5.557 25 Si 0.795 3.205 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.198 1.198 29 N -0.174 5.174 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.264 0.736 43 H 0.195 0.805 44 H 0.225 0.775 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.689 6.209 -17.073 30.653 hybrid contribution 0.376 0.077 0.995 1.067 sum -24.314 6.287 -16.077 29.819 Atomic orbital electron populations 1.21742 0.93011 1.02365 1.02930 1.21866 0.98092 0.95403 1.01943 1.22148 0.77219 0.97428 1.00060 0.90710 1.22317 0.96013 0.98015 0.94510 0.88019 1.21851 0.96047 0.99175 1.02970 1.22940 0.92164 0.97648 1.03433 1.22773 0.98169 0.96761 0.85321 1.48456 1.08391 1.55684 1.18793 1.19214 0.86492 0.79936 0.83251 1.90773 1.71788 1.47762 1.31471 1.20223 0.88634 0.78614 0.82651 1.90646 1.71611 1.43963 1.30861 1.42116 1.02024 1.60283 1.20744 1.19324 0.84234 1.01154 0.94825 1.21746 0.90606 1.16601 1.02720 1.23262 1.00244 0.97627 0.87628 1.48916 1.04399 1.45791 1.13060 1.19394 0.77675 0.95961 0.91709 1.21390 1.06361 1.30050 1.00854 0.93092 1.25715 0.94460 0.95615 1.02355 1.69986 1.09795 1.37769 1.38176 0.85369 0.77801 0.78648 0.78727 1.19988 1.19510 1.19816 1.77319 0.88832 1.28638 1.22616 0.90334 0.92295 0.92555 0.91251 0.93592 0.92804 0.90426 0.91323 0.86999 0.90295 0.89650 0.90036 0.73608 0.80549 0.77528 0.95952 0.91822 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.88 71.98 0.64 -0.90 16 2 C -0.13 -2.14 5.40 30.59 0.17 -1.97 16 3 C 0.13 2.08 2.48 45.34 0.11 2.19 16 4 H 0.07 1.31 7.83 -2.39 -0.02 1.29 16 5 C -0.09 -0.77 2.47 -9.61 -0.02 -0.80 16 6 H 0.10 0.67 7.78 -2.39 -0.02 0.65 16 7 C -0.14 -0.85 8.99 71.98 0.65 -0.20 16 8 C -0.12 -1.12 6.53 31.91 0.21 -0.91 16 9 C 0.09 1.45 5.87 86.78 0.51 1.96 16 10 N -0.58 -11.94 3.07 -790.17 -2.42 -14.36 16 11 C 0.53 14.37 7.64 87.23 0.67 15.04 16 12 O -0.54 -16.88 15.65 -3.28 -0.05 -16.93 16 13 C 0.52 15.64 7.82 87.23 0.68 16.33 16 14 O -0.50 -15.17 11.03 -3.34 -0.04 -15.21 16 15 N -0.60 -20.54 5.43 -308.90 -1.68 -22.22 16 16 C 0.26 10.50 8.10 133.40 1.08 11.58 16 17 C -0.29 -10.64 9.60 22.12 0.21 -10.43 16 18 C 0.06 2.30 11.43 83.51 0.95 3.26 16 19 N -0.34 -15.84 3.67 -351.83 -1.29 -17.13 16 20 C 0.27 13.99 6.26 85.63 0.54 14.53 16 21 C -0.55 -31.09 9.24 25.60 0.24 -30.85 16 22 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 23 C 0.02 1.06 5.46 84.65 0.46 1.52 16 24 N -0.92 -52.04 13.29 21.45 0.28 -51.75 16 25 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 28 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 29 N -0.34 -16.30 12.42 -54.53 -0.68 -16.97 16 30 H 0.08 0.54 6.51 -2.38 -0.02 0.52 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 1.03 8.04 -2.38 -0.02 1.01 16 34 H 0.05 1.02 6.90 -2.39 -0.02 1.00 16 35 H 0.05 0.40 8.11 -2.39 -0.02 0.38 16 36 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.07 0.36 6.17 -2.39 -0.01 0.35 16 38 H 0.11 0.53 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.74 8.03 -2.39 -0.02 0.72 16 40 H 0.09 1.63 6.48 -2.38 -0.02 1.61 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.43 13.77 8.29 -92.71 -0.77 13.01 16 43 H 0.18 5.95 5.91 -2.92 -0.02 5.93 16 44 H 0.21 5.94 8.06 -2.91 -0.02 5.92 16 45 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 3.16 8.07 -2.39 -0.02 3.15 16 47 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -69.10 382.73 3.47 -65.63 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.23 Total: 22.51 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 7.09 Total: 20.33 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.78 Total: -122.44 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.09 Total: -32.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.10 3.47 -65.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186542797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.401 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds