Wall clock time and date at job start Tue Mar 31 2020 19:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31522 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00071 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46728 * 90.00208 * 9 7 5 11 11 H 1.48498 * 109.46997 * 209.99903 * 9 7 5 12 12 H 1.48494 * 109.47182 * 330.00149 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40339 * 126.11546 * 0.03032 * 19 18 16 21 21 N 1.30820 * 108.21050 * 179.97438 * 20 19 18 22 22 N 1.40052 * 108.36687 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.99569 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.46814 * 24.97849 * 23 22 21 25 25 C 1.52994 * 109.47107 * 144.97856 * 23 22 21 26 26 C 1.52999 * 109.47110 * 264.98150 * 23 22 21 27 27 C 1.53001 * 117.49699 * 128.62337 * 26 23 22 28 28 C 1.52995 * 117.50027 * 59.99855 * 26 23 22 29 29 C 1.35229 * 108.00805 * 359.74013 * 22 21 20 30 30 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 31 31 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 34 34 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 35 35 H 0.96991 * 120.00052 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 37 37 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 38 38 H 1.08004 * 125.89395 * 359.97438 * 20 19 18 39 39 H 1.09003 * 109.47111 * 60.00056 * 25 23 22 40 40 H 1.08994 * 109.47461 * 180.02562 * 25 23 22 41 41 H 1.09000 * 109.47232 * 300.00616 * 25 23 22 42 42 H 1.09005 * 115.54895 * 274.32698 * 26 23 22 43 43 H 1.08995 * 117.49838 * 359.97438 * 27 26 23 44 44 H 1.08999 * 117.49892 * 145.02019 * 27 26 23 45 45 H 1.08998 * 117.49724 * 214.97417 * 28 26 23 46 46 H 1.08999 * 117.50346 * 359.97438 * 28 26 23 47 47 H 1.08004 * 126.17544 * 180.26957 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.4416 2.1143 2.0848 11 1 6.4396 -0.3097 2.1548 12 1 6.6135 0.8417 0.0277 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7591 4.6377 -5.1131 21 7 -1.4466 5.2856 -6.0181 22 7 -2.6961 5.6097 -5.4748 23 6 -3.7693 6.3368 -6.1573 24 1 -3.6650 6.2113 -7.2350 25 6 -5.1242 5.7859 -5.7085 26 6 -3.6815 7.8234 -5.8062 27 6 -3.6793 8.8238 -6.9639 28 6 -2.3938 8.5619 -6.1765 29 6 -2.7401 5.1290 -4.2116 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0617 2.9494 36 1 2.2718 2.1231 -1.9978 37 1 -1.7965 3.8741 -2.0117 38 1 0.2434 4.2543 -5.2337 39 1 -5.2285 5.9114 -4.6307 40 1 -5.9227 6.3265 -6.2165 41 1 -5.1867 4.7268 -5.9586 42 1 -4.1847 8.1195 -4.8857 43 1 -3.7399 8.4228 -7.9756 44 1 -4.1811 9.7783 -6.8052 45 1 -2.0500 9.3442 -5.4998 46 1 -1.6089 7.9887 -6.6698 47 1 -3.5711 5.2117 -3.5267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188817301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:19 Heat of formation + Delta-G solvation = 33.924134 kcal Electronic energy + Delta-G solvation = -28366.979485 eV Core-core repulsion = 24359.715474 eV Total energy + Delta-G solvation = -4007.264011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58943 -40.08025 -38.40228 -37.87683 -35.46441 -34.68753 -33.65113 -32.38587 -30.97476 -29.95831 -29.10661 -27.24924 -25.13427 -24.13287 -22.90512 -22.75354 -22.22644 -21.31191 -20.39345 -19.86609 -19.38329 -18.20455 -17.63985 -16.34158 -16.19565 -15.95411 -15.69264 -15.55747 -15.17696 -15.01219 -14.45183 -14.41673 -14.17958 -13.77024 -13.28765 -13.24008 -13.02494 -12.82121 -12.73451 -12.31270 -12.09526 -11.96262 -11.73284 -11.58451 -11.31828 -11.13876 -10.93178 -10.92304 -10.86252 -10.84217 -10.77979 -10.62931 -10.33917 -10.25563 -9.68385 -9.48274 -9.13051 -9.00228 -8.55035 -8.01972 -7.78108 -6.16419 -4.25824 1.50462 1.98254 2.11601 2.85071 2.87281 3.24849 3.31675 3.34833 3.43679 3.81518 3.93520 4.18219 4.28843 4.36644 4.47804 4.51008 4.61213 4.73444 4.83011 4.96088 5.09971 5.14671 5.18241 5.22869 5.33052 5.44549 5.48812 5.52426 5.58279 5.70416 5.79419 6.10219 6.32476 6.37806 6.56607 6.75602 6.86692 6.96321 7.04564 7.17276 7.26127 7.28889 7.50927 7.61624 7.66836 7.80362 8.02998 8.09736 8.47988 8.64767 8.88568 9.40898 10.88965 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002154 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.175776 B =12996.507511 C =13627.176706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.507 3.493 17 O -0.516 6.516 18 N -0.620 5.620 19 C 0.001 3.999 20 C 0.053 3.947 21 N -0.288 5.288 22 N -0.360 5.360 23 C 0.195 3.805 24 H 0.102 0.898 25 C -0.161 4.161 26 C -0.178 4.178 27 C -0.167 4.167 28 C -0.166 4.166 29 C 0.023 3.977 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.026 0.974 33 H 0.035 0.965 34 H 0.103 0.897 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.421 0.579 38 H 0.206 0.794 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.046 12.434 -15.021 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.316 5.316 14 C 0.276 3.724 15 O -0.411 6.411 16 C 0.290 3.710 17 O -0.391 6.391 18 N -0.267 5.267 19 C -0.103 4.103 20 C -0.134 4.134 21 N -0.109 5.109 22 N -0.144 5.144 23 C 0.094 3.906 24 H 0.120 0.880 25 C -0.219 4.219 26 C -0.197 4.197 27 C -0.204 4.204 28 C -0.203 4.203 29 C -0.125 4.125 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.258 0.742 38 H 0.223 0.777 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.062 12.798 -16.020 26.675 hybrid contribution 0.879 -0.322 1.123 1.462 sum -16.184 12.476 -14.897 25.288 Atomic orbital electron populations 1.21855 0.98317 0.98388 1.01043 1.21965 0.92646 0.99423 1.02764 1.19005 0.94751 0.89380 0.80164 0.92769 1.21214 0.90351 1.39322 1.06532 0.91745 1.24878 0.98812 0.94625 0.95279 1.69883 1.35247 1.37469 1.09345 0.86408 0.84563 0.77642 0.78303 1.20522 1.21057 1.19724 1.46444 1.13462 1.52545 1.19185 1.19558 0.84467 0.81392 0.87010 1.90734 1.51230 1.59585 1.39527 1.20834 0.81438 0.79189 0.89531 1.90603 1.50891 1.57459 1.40099 1.42492 1.16667 1.53680 1.13817 1.17766 0.95343 1.07667 0.89569 1.24540 1.01264 0.98233 0.89350 1.77363 0.91415 1.19558 1.22550 1.48355 1.12491 1.43774 1.09796 1.20754 0.84119 0.88253 0.97515 0.87991 1.22158 0.94762 1.02215 1.02808 1.22726 1.04268 0.91983 1.00773 1.23005 1.01746 0.99774 0.95900 1.22945 0.91473 1.02625 1.03279 1.21672 0.98899 1.02458 0.89452 0.92964 0.94563 0.95518 0.94650 0.87870 0.92472 0.76352 0.74219 0.77730 0.91337 0.89846 0.91227 0.87119 0.88460 0.88376 0.88685 0.87916 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.78 5.29 -17.81 -0.09 1.68 16 8 N -0.88 -24.07 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.67 -14.00 5.01 -55.40 -0.28 -14.28 16 14 C 0.50 9.67 6.45 -11.64 -0.08 9.60 16 15 O -0.53 -11.14 13.61 5.49 0.07 -11.07 16 16 C 0.51 8.56 7.86 -11.64 -0.09 8.47 16 17 O -0.52 -9.25 13.63 5.45 0.07 -9.17 16 18 N -0.62 -8.60 5.45 -10.48 -0.06 -8.66 16 19 C 0.00 0.02 6.90 -83.96 -0.58 -0.56 16 20 C 0.05 0.77 10.84 -17.19 -0.19 0.58 16 21 N -0.29 -3.85 12.56 30.72 0.39 -3.47 16 22 N -0.36 -3.77 3.41 -54.66 -0.19 -3.95 16 23 C 0.20 1.41 3.51 -67.93 -0.24 1.17 16 24 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16 25 C -0.16 -0.78 8.81 37.15 0.33 -0.45 16 26 C -0.18 -1.18 5.36 -90.62 -0.49 -1.67 16 27 C -0.17 -0.95 10.18 -26.73 -0.27 -1.22 16 28 C -0.17 -1.31 10.12 -26.73 -0.27 -1.59 16 29 C 0.02 0.24 10.62 -16.91 -0.18 0.06 16 30 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 31 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.40 7.94 8.01 -40.82 -0.33 7.61 16 37 H 0.42 5.09 8.29 -40.82 -0.34 4.75 16 38 H 0.21 3.14 5.92 -52.48 -0.31 2.83 16 39 H 0.07 0.29 7.15 -51.93 -0.37 -0.08 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 0.66 8.11 -51.93 -0.42 0.24 16 43 H 0.10 0.50 8.05 -51.93 -0.42 0.08 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.17 1.21 7.26 -52.48 -0.38 0.83 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -29.91 387.48 -7.85 -37.76 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.88 Total: 12.61 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.43 Total: 2.40 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.49 Total: -53.80 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.15 Total: -20.24 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.91 -7.85 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188817301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds