Wall clock time and date at job start Tue Mar 31 2020 19:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31522 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00071 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46728 * 90.00208 * 9 7 5 11 11 H 1.48498 * 109.46997 * 209.99903 * 9 7 5 12 12 H 1.48494 * 109.47182 * 330.00149 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40339 * 126.11546 * 0.03032 * 19 18 16 21 21 N 1.30820 * 108.21050 * 179.97438 * 20 19 18 22 22 N 1.40052 * 108.36687 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.99569 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.46814 * 24.97849 * 23 22 21 25 25 C 1.52994 * 109.47107 * 144.97856 * 23 22 21 26 26 C 1.52999 * 109.47110 * 264.98150 * 23 22 21 27 27 C 1.53001 * 117.49699 * 128.62337 * 26 23 22 28 28 C 1.52995 * 117.50027 * 59.99855 * 26 23 22 29 29 C 1.35229 * 108.00805 * 359.74013 * 22 21 20 30 30 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 31 31 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 34 34 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 35 35 H 0.96991 * 120.00052 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 37 37 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 38 38 H 1.08004 * 125.89395 * 359.97438 * 20 19 18 39 39 H 1.09003 * 109.47111 * 60.00056 * 25 23 22 40 40 H 1.08994 * 109.47461 * 180.02562 * 25 23 22 41 41 H 1.09000 * 109.47232 * 300.00616 * 25 23 22 42 42 H 1.09005 * 115.54895 * 274.32698 * 26 23 22 43 43 H 1.08995 * 117.49838 * 359.97438 * 27 26 23 44 44 H 1.08999 * 117.49892 * 145.02019 * 27 26 23 45 45 H 1.08998 * 117.49724 * 214.97417 * 28 26 23 46 46 H 1.08999 * 117.50346 * 359.97438 * 28 26 23 47 47 H 1.08004 * 126.17544 * 180.26957 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.4416 2.1143 2.0848 11 1 6.4396 -0.3097 2.1548 12 1 6.6135 0.8417 0.0277 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7591 4.6377 -5.1131 21 7 -1.4466 5.2856 -6.0181 22 7 -2.6961 5.6097 -5.4748 23 6 -3.7693 6.3368 -6.1573 24 1 -3.6650 6.2113 -7.2350 25 6 -5.1242 5.7859 -5.7085 26 6 -3.6815 7.8234 -5.8062 27 6 -3.6793 8.8238 -6.9639 28 6 -2.3938 8.5619 -6.1765 29 6 -2.7401 5.1290 -4.2116 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0617 2.9494 36 1 2.2718 2.1231 -1.9978 37 1 -1.7965 3.8741 -2.0117 38 1 0.2434 4.2543 -5.2337 39 1 -5.2285 5.9114 -4.6307 40 1 -5.9227 6.3265 -6.2165 41 1 -5.1867 4.7268 -5.9586 42 1 -4.1847 8.1195 -4.8857 43 1 -3.7399 8.4228 -7.9756 44 1 -4.1811 9.7783 -6.8052 45 1 -2.0500 9.3442 -5.4998 46 1 -1.6089 7.9887 -6.6698 47 1 -3.5711 5.2117 -3.5267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188817301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:18 Heat of formation + Delta-G solvation = 14.560959 kcal Electronic energy + Delta-G solvation = -28367.819136 eV Core-core repulsion = 24359.715474 eV Total energy + Delta-G solvation = -4008.103661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58145 -41.46757 -39.69263 -38.68689 -37.17015 -35.93551 -34.41537 -34.24266 -32.78591 -30.81597 -30.03910 -29.10408 -26.34981 -25.15884 -24.57082 -23.31989 -23.06776 -22.50895 -21.52365 -21.24936 -20.80620 -19.58853 -18.68079 -18.03203 -17.53769 -17.08951 -16.88198 -16.69619 -16.37613 -16.16191 -15.91559 -15.50721 -15.28597 -15.05233 -14.79549 -14.59740 -13.95927 -13.83753 -13.63675 -13.48903 -13.39891 -13.18342 -12.94090 -12.79239 -12.69374 -12.51208 -12.48721 -12.33633 -12.11664 -12.09133 -11.88825 -11.80273 -11.57195 -11.36557 -11.17436 -11.08782 -10.59076 -10.48348 -10.38825 -9.80259 -8.80882 -8.17228 -6.33726 0.27070 0.90292 1.20631 1.45741 1.46619 1.56513 1.63906 1.73628 2.37693 2.41664 2.84680 2.91890 3.12610 3.40880 3.58414 3.71066 3.82364 3.94629 4.01562 4.11387 4.21983 4.34095 4.49252 4.51274 4.57764 4.60472 4.74008 4.75441 4.76414 4.91339 4.97495 4.98402 5.05027 5.13511 5.20302 5.24875 5.26489 5.39839 5.42758 5.58214 5.67292 5.72800 5.82144 6.03105 6.11942 6.14045 6.56912 6.69407 6.71825 6.91046 7.15728 7.38323 8.87887 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002154 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.175776 B =12996.507511 C =13627.176706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.015 0.985 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.266 1.266 13 N -0.672 5.672 14 C 0.499 3.501 15 O -0.547 6.547 16 C 0.511 3.489 17 O -0.531 6.531 18 N -0.599 5.599 19 C -0.032 4.032 20 C 0.034 3.966 21 N -0.309 5.309 22 N -0.349 5.349 23 C 0.185 3.815 24 H 0.100 0.900 25 C -0.156 4.156 26 C -0.173 4.173 27 C -0.147 4.147 28 C -0.191 4.191 29 C 0.053 3.947 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.430 0.570 38 H 0.188 0.812 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 13.494 -15.924 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.190 1.190 13 N -0.321 5.321 14 C 0.279 3.721 15 O -0.426 6.426 16 C 0.293 3.707 17 O -0.407 6.407 18 N -0.246 5.246 19 C -0.136 4.136 20 C -0.152 4.152 21 N -0.131 5.131 22 N -0.133 5.133 23 C 0.085 3.915 24 H 0.118 0.882 25 C -0.214 4.214 26 C -0.192 4.192 27 C -0.184 4.184 28 C -0.229 4.229 29 C -0.097 4.097 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.269 0.731 38 H 0.205 0.795 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.143 0.857 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -19.230 13.889 -16.965 29.163 hybrid contribution 1.389 -0.532 1.322 1.990 sum -17.841 13.357 -15.643 27.229 Atomic orbital electron populations 1.21706 0.96479 0.99660 1.00481 1.21822 0.94241 0.98567 1.01631 1.18625 0.93997 0.89581 0.80382 0.96665 1.21527 0.91325 1.39392 1.06833 0.91467 1.25677 1.03104 0.94237 0.94955 1.70008 1.36934 1.37999 1.09761 0.85408 0.79343 0.77559 0.78424 1.20329 1.20683 1.19004 1.46221 1.14454 1.53177 1.18296 1.19947 0.83608 0.80663 0.87851 1.90718 1.51511 1.59935 1.40485 1.20165 0.82512 0.79892 0.88131 1.90618 1.51628 1.58436 1.40049 1.42235 1.15503 1.52381 1.14470 1.17899 0.96666 1.10021 0.89051 1.24358 1.01190 0.99189 0.90447 1.77329 0.92843 1.20066 1.22887 1.48784 1.12021 1.42563 1.09912 1.21160 0.84315 0.88581 0.97410 0.88233 1.22180 0.93382 1.02022 1.03836 1.22781 1.03045 0.91502 1.01877 1.23086 0.99381 1.00143 0.95815 1.22878 0.91933 1.03330 1.04716 1.22258 0.98579 0.99370 0.89446 0.94466 0.94040 0.93288 0.94268 0.90318 0.92397 0.75679 0.73084 0.79513 0.90102 0.87660 0.91728 0.85687 0.87889 0.86687 0.88825 0.90433 0.76759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.77 16 3 C 0.28 13.91 2.24 44.25 0.10 14.01 16 4 H 0.02 0.89 7.58 -2.39 -0.02 0.87 16 5 C -0.55 -29.25 8.73 25.60 0.22 -29.03 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 N -0.67 -28.76 5.01 -447.56 -2.24 -31.01 16 14 C 0.50 19.62 6.45 87.23 0.56 20.19 16 15 O -0.55 -23.08 13.61 -3.26 -0.04 -23.12 16 16 C 0.51 17.29 7.86 87.23 0.69 17.97 16 17 O -0.53 -19.40 13.63 -3.41 -0.05 -19.44 16 18 N -0.60 -16.07 5.45 -305.42 -1.67 -17.74 16 19 C -0.03 -0.82 6.90 37.71 0.26 -0.56 16 20 C 0.03 0.99 10.84 85.35 0.93 1.92 16 21 N -0.31 -8.24 12.56 -56.72 -0.71 -8.95 16 22 N -0.35 -6.65 3.41 -326.84 -1.12 -7.77 16 23 C 0.19 2.18 3.51 44.99 0.16 2.34 16 24 H 0.10 1.25 7.90 -2.39 -0.02 1.23 16 25 C -0.16 -0.90 8.81 71.98 0.63 -0.27 16 26 C -0.17 -1.82 5.36 -10.80 -0.06 -1.88 16 27 C -0.15 -1.30 10.18 30.60 0.31 -0.99 16 28 C -0.19 -2.84 10.12 30.59 0.31 -2.53 16 29 C 0.05 0.95 10.62 83.61 0.89 1.84 16 30 H 0.04 1.66 7.85 -2.38 -0.02 1.64 16 31 H 0.04 1.69 5.65 -2.39 -0.01 1.67 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 4.19 5.95 -2.38 -0.01 4.18 16 35 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.41 16.44 8.01 -92.71 -0.74 15.70 16 37 H 0.43 9.71 8.29 -92.71 -0.77 8.94 16 38 H 0.19 6.05 5.92 -2.91 -0.02 6.04 16 39 H 0.08 0.30 7.15 -2.39 -0.02 0.28 16 40 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.13 1.00 8.11 -2.38 -0.02 0.98 16 43 H 0.10 0.81 8.05 -2.39 -0.02 0.79 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 47 H 0.22 1.96 7.26 -2.91 -0.02 1.94 16 Total: -1.00 -66.56 387.48 2.17 -64.39 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.50 Total: 35.74 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.23 Total: 14.09 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -5.50 Total: -115.80 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.09 Total: -42.57 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.56 2.17 -64.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188817301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.952 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds