Wall clock time and date at job start Tue Mar 31 2020 19:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31512 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46841 * 89.99881 * 9 7 5 11 11 H 1.48494 * 109.47129 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47268 * 330.00196 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40339 * 126.11546 * 0.03032 * 19 18 16 21 21 N 1.30820 * 108.21050 * 179.97438 * 20 19 18 22 22 N 1.40051 * 108.36829 * 0.02562 * 21 20 19 23 23 C 1.46502 * 125.99597 * 180.02562 * 22 21 20 24 24 H 1.09002 * 109.46769 * 334.97306 * 23 22 21 25 25 C 1.53004 * 109.46858 * 214.97227 * 23 22 21 26 26 C 1.53001 * 109.47301 * 94.97134 * 23 22 21 27 27 C 1.52997 * 117.49817 * 248.62309 * 26 23 22 28 28 C 1.52999 * 60.00060 * 252.50831 * 27 26 23 29 29 C 1.35224 * 108.00779 * 359.73190 * 22 21 20 30 30 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 31 31 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 34 34 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 35 35 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 37 37 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 38 38 H 1.08002 * 125.89304 * 359.97438 * 20 19 18 39 39 H 1.09001 * 109.46565 * 179.97438 * 25 23 22 40 40 H 1.08997 * 109.47101 * 299.99898 * 25 23 22 41 41 H 1.09005 * 109.47014 * 59.99890 * 25 23 22 42 42 H 1.09001 * 115.55058 * 34.32783 * 26 23 22 43 43 H 1.08995 * 117.49891 * 359.97438 * 27 26 23 44 44 H 1.09000 * 117.49721 * 145.02317 * 27 26 23 45 45 H 1.08992 * 117.50429 * 252.51271 * 28 27 26 46 46 H 1.09003 * 117.51638 * 107.47550 * 28 27 26 47 47 H 1.08005 * 126.17978 * 180.26295 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7942 0.2362 3.8754 12 1 1.7882 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7591 4.6377 -5.1131 21 7 -1.4466 5.2856 -6.0181 22 7 -2.6957 5.6107 -5.4745 23 6 -3.7691 6.3373 -6.1572 24 1 -3.3428 6.9620 -6.9422 25 6 -4.5094 7.2189 -5.1493 26 6 -4.7481 5.3377 -6.7762 27 6 -4.7956 5.2483 -8.3028 28 6 -5.9478 5.9035 -7.5387 29 6 -2.7395 5.1306 -4.2111 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.8771 0.4820 2.1128 36 1 2.2718 2.1231 -1.9978 37 1 -1.7965 3.8741 -2.0117 38 1 0.2434 4.2543 -5.2337 39 1 -5.3077 7.7598 -5.6574 40 1 -4.9356 6.5942 -4.3644 41 1 -3.8118 7.9310 -4.7083 42 1 -4.8987 4.4167 -6.2129 43 1 -4.1297 5.9019 -8.8662 44 1 -4.9774 4.2684 -8.7441 45 1 -6.8875 5.3548 -7.4772 46 1 -6.0398 6.9880 -7.5989 47 1 -3.5701 5.2141 -3.5258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188817335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:26 Heat of formation + Delta-G solvation = 43.441417 kcal Electronic energy + Delta-G solvation = -28331.262241 eV Core-core repulsion = 24324.410930 eV Total energy + Delta-G solvation = -4006.851311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64800 -40.22153 -38.58133 -38.07332 -35.70610 -34.83090 -33.61492 -32.41018 -31.56198 -29.95946 -29.14693 -27.74195 -25.41406 -24.29364 -22.79746 -22.68853 -22.20661 -21.51733 -20.41378 -20.14738 -19.61820 -18.32390 -17.88475 -16.66258 -16.30702 -16.00426 -15.81092 -15.56732 -15.38812 -15.19309 -14.56137 -14.31962 -14.24076 -13.85486 -13.63997 -13.47383 -13.07724 -13.03882 -12.85951 -12.53383 -12.41417 -12.01638 -11.95442 -11.87146 -11.70507 -11.27030 -11.16540 -11.04889 -10.96168 -10.89198 -10.81436 -10.68873 -10.57095 -9.98509 -9.59816 -9.54863 -9.30598 -9.13209 -8.81095 -8.26663 -7.85831 -6.23548 -4.27286 1.40931 1.89259 2.07482 2.74037 2.79443 3.20608 3.23837 3.32918 3.35755 3.66679 3.98324 4.09039 4.23806 4.27753 4.38904 4.51814 4.53492 4.61249 4.78739 4.87435 4.99327 5.05282 5.08635 5.13852 5.28696 5.37884 5.42298 5.46529 5.55230 5.60968 5.67574 5.87799 5.95160 6.02404 6.08004 6.55280 6.60842 6.69607 6.71442 6.80350 6.82982 7.00984 7.16551 7.21866 7.39514 7.55291 7.83348 8.09366 8.39725 8.55377 8.77843 9.34892 10.88256 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.002116 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.830705 B =13229.937600 C =13526.490208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.084 0.916 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.660 5.660 14 C 0.500 3.500 15 O -0.533 6.533 16 C 0.508 3.492 17 O -0.511 6.511 18 N -0.619 5.619 19 C 0.001 3.999 20 C 0.054 3.946 21 N -0.284 5.284 22 N -0.361 5.361 23 C 0.197 3.803 24 H 0.103 0.897 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.171 4.171 28 C -0.169 4.169 29 C 0.022 3.978 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.268 0.732 36 H 0.409 0.591 37 H 0.421 0.579 38 H 0.208 0.792 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.230 10.233 -14.371 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.309 5.309 14 C 0.279 3.721 15 O -0.412 6.412 16 C 0.291 3.709 17 O -0.385 6.385 18 N -0.266 5.266 19 C -0.104 4.104 20 C -0.133 4.133 21 N -0.105 5.105 22 N -0.146 5.146 23 C 0.095 3.905 24 H 0.121 0.879 25 C -0.220 4.220 26 C -0.192 4.192 27 C -0.208 4.208 28 C -0.206 4.206 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.244 0.756 37 H 0.258 0.742 38 H 0.224 0.776 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -23.080 10.678 -15.449 29.755 hybrid contribution -0.452 -0.942 1.667 1.968 sum -23.532 9.736 -13.781 28.956 Atomic orbital electron populations 1.21891 0.96916 0.99384 1.02066 1.22316 0.94383 0.99614 1.01601 1.19348 0.96183 0.88684 0.81974 0.92787 1.21014 0.88241 1.40230 1.08140 0.89842 1.24829 0.94901 0.95087 0.97614 1.69861 1.08668 1.44122 1.29791 0.86913 0.80922 0.79997 0.80964 1.20141 1.22062 1.18428 1.46083 1.13704 1.52520 1.18625 1.19602 0.84215 0.81146 0.87184 1.90732 1.51307 1.59566 1.39588 1.20657 0.81544 0.79390 0.89336 1.90628 1.50769 1.57228 1.39924 1.42455 1.16585 1.53661 1.13877 1.17757 0.95415 1.07654 0.89536 1.24577 1.01290 0.98242 0.89238 1.77412 0.91310 1.19488 1.22321 1.48294 1.12274 1.44420 1.09577 1.20730 0.83787 0.90930 0.95069 0.87936 1.22167 1.00946 0.99639 0.99293 1.22682 0.99747 1.01342 0.95400 1.23048 1.01569 1.02854 0.93308 1.22984 0.93118 1.00919 1.03601 1.21687 0.98952 1.02426 0.89517 0.92685 0.93215 0.94637 0.91903 0.92369 0.92176 0.75573 0.74205 0.77610 0.89915 0.91264 0.91238 0.87217 0.88332 0.88534 0.88319 0.88355 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.51 37.16 0.32 -2.44 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.15 16 3 C 0.24 5.54 1.83 -69.08 -0.13 5.41 16 4 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 5 C -0.54 -14.33 9.31 -34.44 -0.32 -14.65 16 6 H 0.08 2.37 7.98 -52.49 -0.42 1.95 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 9 Si 0.88 21.11 24.41 -169.99 -4.15 16.96 16 10 H -0.27 -6.37 6.83 56.52 0.39 -5.98 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 13 N -0.66 -13.17 5.01 -55.40 -0.28 -13.45 16 14 C 0.50 9.11 6.45 -11.64 -0.08 9.04 16 15 O -0.53 -10.33 13.61 5.49 0.07 -10.25 16 16 C 0.51 8.14 7.86 -11.64 -0.09 8.05 16 17 O -0.51 -8.85 13.63 5.45 0.07 -8.77 16 18 N -0.62 -8.08 5.45 -10.48 -0.06 -8.14 16 19 C 0.00 0.01 6.90 -83.96 -0.58 -0.57 16 20 C 0.05 0.76 10.84 -17.19 -0.19 0.57 16 21 N -0.28 -3.83 12.56 30.72 0.39 -3.44 16 22 N -0.36 -3.73 3.53 -54.65 -0.19 -3.92 16 23 C 0.20 1.38 3.55 -67.93 -0.24 1.14 16 24 H 0.10 0.73 7.90 -51.93 -0.41 0.32 16 25 C -0.16 -0.76 8.68 37.16 0.32 -0.43 16 26 C -0.17 -1.10 5.45 -90.62 -0.49 -1.60 16 27 C -0.17 -1.03 10.18 -26.73 -0.27 -1.31 16 28 C -0.17 -0.76 9.74 -26.73 -0.26 -1.02 16 29 C 0.02 0.22 10.63 -16.91 -0.18 0.04 16 30 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 31 H 0.05 0.92 5.65 -51.93 -0.29 0.62 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.31 3.22 -51.93 -0.17 1.14 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.41 7.81 8.01 -40.82 -0.33 7.49 16 37 H 0.42 4.67 8.29 -40.82 -0.34 4.33 16 38 H 0.21 3.09 5.92 -52.49 -0.31 2.78 16 39 H 0.08 0.25 7.29 -51.93 -0.38 -0.13 16 40 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.33 7.61 -51.93 -0.39 -0.07 16 47 H 0.18 1.12 7.27 -52.48 -0.38 0.73 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -31.44 379.11 -6.76 -38.20 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.68 Total: 11.15 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.42 Total: 1.19 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.63 Total: -54.18 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.15 Total: -19.03 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.15 Total: 16.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.44 -6.76 -38.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188817335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.638 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds