Wall clock time and date at job start Tue Mar 31 2020 19:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31512 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46841 * 89.99881 * 9 7 5 11 11 H 1.48494 * 109.47129 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47268 * 330.00196 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21355 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.49335 * 119.99910 * 180.02562 * 14 13 3 17 17 O 1.21401 * 119.99626 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99910 * 180.02562 * 16 14 13 19 19 C 1.40480 * 120.00008 * 179.97438 * 18 16 14 20 20 C 1.40339 * 126.11546 * 0.03032 * 19 18 16 21 21 N 1.30820 * 108.21050 * 179.97438 * 20 19 18 22 22 N 1.40051 * 108.36829 * 0.02562 * 21 20 19 23 23 C 1.46502 * 125.99597 * 180.02562 * 22 21 20 24 24 H 1.09002 * 109.46769 * 334.97306 * 23 22 21 25 25 C 1.53004 * 109.46858 * 214.97227 * 23 22 21 26 26 C 1.53001 * 109.47301 * 94.97134 * 23 22 21 27 27 C 1.52997 * 117.49817 * 248.62309 * 26 23 22 28 28 C 1.52999 * 60.00060 * 252.50831 * 27 26 23 29 29 C 1.35224 * 108.00779 * 359.73190 * 22 21 20 30 30 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 31 31 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 34 34 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 35 35 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 37 37 H 0.97003 * 120.00095 * 0.02562 * 18 16 14 38 38 H 1.08002 * 125.89304 * 359.97438 * 20 19 18 39 39 H 1.09001 * 109.46565 * 179.97438 * 25 23 22 40 40 H 1.08997 * 109.47101 * 299.99898 * 25 23 22 41 41 H 1.09005 * 109.47014 * 59.99890 * 25 23 22 42 42 H 1.09001 * 115.55058 * 34.32783 * 26 23 22 43 43 H 1.08995 * 117.49891 * 359.97438 * 27 26 23 44 44 H 1.09000 * 117.49721 * 145.02317 * 27 26 23 45 45 H 1.08992 * 117.50429 * 252.51271 * 28 27 26 46 46 H 1.09003 * 117.51638 * 107.47550 * 28 27 26 47 47 H 1.08005 * 126.17978 * 180.26295 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7942 0.2362 3.8754 12 1 1.7882 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0398 3.3315 -2.6432 17 8 0.8148 3.3628 -3.5771 18 7 -1.1774 3.8988 -2.7581 19 6 -1.5490 4.5268 -3.9585 20 6 -0.7591 4.6377 -5.1131 21 7 -1.4466 5.2856 -6.0181 22 7 -2.6957 5.6107 -5.4745 23 6 -3.7691 6.3373 -6.1572 24 1 -3.3428 6.9620 -6.9422 25 6 -4.5094 7.2189 -5.1493 26 6 -4.7481 5.3377 -6.7762 27 6 -4.7956 5.2483 -8.3028 28 6 -5.9478 5.9035 -7.5387 29 6 -2.7395 5.1306 -4.2111 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.8771 0.4820 2.1128 36 1 2.2718 2.1231 -1.9978 37 1 -1.7965 3.8741 -2.0117 38 1 0.2434 4.2543 -5.2337 39 1 -5.3077 7.7598 -5.6574 40 1 -4.9356 6.5942 -4.3644 41 1 -3.8118 7.9310 -4.7083 42 1 -4.8987 4.4167 -6.2129 43 1 -4.1297 5.9019 -8.8662 44 1 -4.9774 4.2684 -8.7441 45 1 -6.8875 5.3548 -7.4772 46 1 -6.0398 6.9880 -7.5989 47 1 -3.5701 5.2141 -3.5258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188817335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:25 Heat of formation + Delta-G solvation = 21.055698 kcal Electronic energy + Delta-G solvation = -28332.232959 eV Core-core repulsion = 24324.410930 eV Total energy + Delta-G solvation = -4007.822028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.60968 -41.54095 -39.78405 -38.79262 -37.33524 -35.99181 -34.42158 -34.28141 -33.21370 -30.80400 -30.02323 -29.52241 -26.47231 -25.26019 -24.41664 -23.21514 -23.12604 -22.62822 -21.68607 -21.26557 -20.82721 -19.67479 -18.83056 -18.38262 -17.63892 -17.32511 -16.97538 -16.67440 -16.37337 -16.25176 -15.86609 -15.63076 -15.08934 -15.05537 -14.92837 -14.79790 -14.14600 -14.06810 -13.91066 -13.76273 -13.65335 -13.35093 -12.97605 -12.96264 -12.81854 -12.54965 -12.39775 -12.32727 -12.27984 -11.89517 -11.83951 -11.81794 -11.42560 -11.35574 -11.27060 -11.02798 -10.86810 -10.57471 -10.42529 -9.94869 -8.83826 -8.36592 -6.44395 0.22478 0.86678 1.17039 1.31116 1.38421 1.48131 1.59649 1.69683 2.27785 2.33237 2.77775 2.80136 2.98402 3.48742 3.52757 3.68236 3.80929 3.96851 4.01160 4.06826 4.19319 4.23212 4.32262 4.33614 4.43375 4.48884 4.58986 4.71223 4.79019 4.79339 4.89934 4.95194 4.99203 5.01574 5.10377 5.15317 5.19387 5.22932 5.23751 5.31434 5.49189 5.51971 5.65761 5.94115 6.01821 6.17231 6.52256 6.57416 6.66711 6.84352 7.03236 7.23592 8.78664 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.002116 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.830705 B =13229.937600 C =13526.490208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.941 3.059 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.249 1.249 13 N -0.669 5.669 14 C 0.505 3.495 15 O -0.541 6.541 16 C 0.511 3.489 17 O -0.530 6.530 18 N -0.597 5.597 19 C -0.031 4.031 20 C 0.035 3.965 21 N -0.311 5.311 22 N -0.352 5.352 23 C 0.189 3.811 24 H 0.099 0.901 25 C -0.158 4.158 26 C -0.180 4.180 27 C -0.188 4.188 28 C -0.144 4.144 29 C 0.053 3.947 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.271 0.729 36 H 0.410 0.590 37 H 0.432 0.568 38 H 0.189 0.811 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.374 10.750 -14.177 32.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.173 4.173 8 N -0.572 5.572 9 Si 0.767 3.233 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.173 1.173 13 N -0.318 5.318 14 C 0.285 3.715 15 O -0.419 6.419 16 C 0.292 3.708 17 O -0.407 6.407 18 N -0.244 5.244 19 C -0.135 4.135 20 C -0.151 4.151 21 N -0.134 5.134 22 N -0.136 5.136 23 C 0.088 3.912 24 H 0.117 0.883 25 C -0.216 4.216 26 C -0.200 4.200 27 C -0.226 4.226 28 C -0.181 4.181 29 C -0.096 4.096 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.271 0.729 38 H 0.206 0.794 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -27.284 11.222 -15.292 33.229 hybrid contribution 0.747 -0.962 1.446 1.891 sum -26.537 10.260 -13.846 31.642 Atomic orbital electron populations 1.21797 0.94654 1.01093 1.01835 1.22241 0.96359 0.97895 1.01379 1.19025 0.93555 0.90075 0.82858 0.94235 1.21246 0.90273 1.39157 1.07151 0.93086 1.25636 0.95895 0.95735 1.00013 1.69991 1.10535 1.45820 1.30886 0.85967 0.79526 0.79968 0.77824 1.18449 1.22132 1.17347 1.45924 1.14746 1.53359 1.17770 1.19873 0.83303 0.80383 0.87922 1.90716 1.51359 1.59660 1.40210 1.20112 0.82523 0.80020 0.88102 1.90645 1.51612 1.58318 1.40090 1.42200 1.15467 1.52331 1.14435 1.17875 0.96606 1.09945 0.89079 1.24398 1.01199 0.99121 0.90405 1.77365 0.92892 1.20295 1.22819 1.48726 1.11817 1.43259 1.09782 1.21100 0.83119 0.91146 0.95793 0.88270 1.22194 1.01069 0.99253 0.99042 1.22597 1.00962 1.01172 0.95238 1.23107 1.03085 1.03069 0.93289 1.23083 0.92488 1.01902 1.00632 1.22287 0.98646 0.99261 0.89416 0.93290 0.93011 0.91979 0.91559 0.93149 0.92007 0.75372 0.72892 0.79430 0.87694 0.90117 0.91763 0.88057 0.88643 0.88993 0.87310 0.86676 0.76539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.51 71.98 0.61 -4.23 16 2 C -0.14 -5.82 5.11 30.60 0.16 -5.67 16 3 C 0.25 11.45 1.83 44.25 0.08 11.53 16 4 H 0.04 1.95 6.63 -2.39 -0.02 1.93 16 5 C -0.54 -29.55 9.31 25.60 0.24 -29.31 16 6 H 0.05 3.05 7.98 -2.91 -0.02 3.02 16 7 C 0.03 1.52 5.45 84.66 0.46 1.98 16 8 N -0.93 -56.18 13.96 21.45 0.30 -55.89 16 9 Si 0.94 43.38 24.41 68.60 1.67 45.05 16 10 H -0.26 -11.21 6.83 99.48 0.68 -10.53 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.25 -11.00 6.53 99.48 0.65 -10.35 16 13 N -0.67 -26.92 5.01 -447.56 -2.24 -29.17 16 14 C 0.51 18.17 6.45 87.23 0.56 18.73 16 15 O -0.54 -20.20 13.61 -3.26 -0.04 -20.24 16 16 C 0.51 16.21 7.86 87.23 0.69 16.90 16 17 O -0.53 -18.80 13.63 -3.41 -0.05 -18.84 16 18 N -0.60 -14.78 5.45 -305.42 -1.67 -16.45 16 19 C -0.03 -0.75 6.90 37.71 0.26 -0.49 16 20 C 0.03 1.00 10.84 85.35 0.93 1.92 16 21 N -0.31 -8.35 12.56 -56.72 -0.71 -9.06 16 22 N -0.35 -6.64 3.53 -326.81 -1.15 -7.79 16 23 C 0.19 2.19 3.55 44.99 0.16 2.35 16 24 H 0.10 1.24 7.90 -2.39 -0.02 1.22 16 25 C -0.16 -0.88 8.68 71.98 0.62 -0.26 16 26 C -0.18 -1.89 5.45 -10.79 -0.06 -1.95 16 27 C -0.19 -2.02 10.18 30.59 0.31 -1.70 16 28 C -0.14 -0.84 9.74 30.59 0.30 -0.54 16 29 C 0.05 0.91 10.63 83.62 0.89 1.79 16 30 H 0.05 1.79 7.85 -2.38 -0.02 1.77 16 31 H 0.05 1.80 5.65 -2.39 -0.01 1.78 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.05 2.17 3.22 -2.38 -0.01 2.16 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 36 H 0.41 16.23 8.01 -92.71 -0.74 15.49 16 37 H 0.43 8.58 8.29 -92.71 -0.77 7.81 16 38 H 0.19 5.99 5.92 -2.91 -0.02 5.98 16 39 H 0.10 0.17 7.29 -2.39 -0.02 0.15 16 40 H 0.08 0.30 7.16 -2.39 -0.02 0.28 16 41 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 1.06 8.05 -2.39 -0.02 1.04 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.11 0.31 7.61 -2.39 -0.02 0.29 16 47 H 0.22 1.71 7.27 -2.91 -0.02 1.69 16 Total: -1.00 -69.98 379.11 1.74 -68.24 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.57 Total: 33.08 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.21 Total: 11.06 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -5.48 Total: -118.36 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.09 Total: -39.08 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.05 kcal Total: -69.98 1.74 -68.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188817335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.296 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds