Wall clock time and date at job start Tue Mar 31 2020 19:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46780 * 2 1 4 4 H 1.09003 * 109.47544 * 304.89905 * 3 2 1 5 5 C 1.50703 * 109.47065 * 184.90277 * 3 2 1 6 6 H 1.08000 * 120.00264 * 245.45926 * 5 3 2 7 7 C 1.37880 * 120.00136 * 65.45104 * 5 3 2 8 8 N 1.31515 * 119.99551 * 9.47152 * 7 5 3 9 9 Si 1.86795 * 120.00260 * 189.47052 * 7 5 3 10 10 H 1.48501 * 109.47004 * 84.99319 * 9 7 5 11 11 H 1.48496 * 109.47293 * 204.99676 * 9 7 5 12 12 H 1.48494 * 109.47212 * 324.99673 * 9 7 5 13 13 N 1.46494 * 109.47244 * 64.90498 * 3 2 1 14 14 C 1.34779 * 119.99910 * 274.99646 * 13 3 2 15 15 O 1.21356 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.49333 * 119.99855 * 180.02562 * 14 13 3 17 17 O 1.21400 * 119.99922 * 359.97438 * 16 14 13 18 18 N 1.34779 * 119.99855 * 180.02562 * 16 14 13 19 19 C 1.40472 * 120.00129 * 179.97438 * 18 16 14 20 20 C 1.40344 * 126.11588 * 359.68559 * 19 18 16 21 21 N 1.30825 * 108.20934 * 179.85225 * 20 19 18 22 22 N 1.40048 * 108.36622 * 0.41161 * 21 20 19 23 23 C 1.46501 * 125.99312 * 179.71215 * 22 21 20 24 24 H 1.08995 * 109.47218 * 335.02671 * 23 22 21 25 25 C 1.53002 * 109.47215 * 215.02285 * 23 22 21 26 26 C 1.53002 * 109.46935 * 95.02846 * 23 22 21 27 27 C 1.52997 * 117.49833 * 248.62305 * 26 23 22 28 28 C 1.52996 * 60.00191 * 252.50647 * 27 26 23 29 29 C 1.35230 * 108.01324 * 359.73504 * 22 21 20 30 30 H 1.08999 * 109.47052 * 299.99911 * 1 2 3 31 31 H 1.08995 * 109.47548 * 59.99770 * 1 2 3 32 32 H 1.09005 * 109.47412 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46763 * 240.00350 * 2 1 3 34 34 H 1.08995 * 109.47548 * 120.00230 * 2 1 3 35 35 H 0.97005 * 119.99927 * 179.97438 * 8 7 5 36 36 H 0.97003 * 120.00505 * 95.27265 * 13 3 2 37 37 H 0.97000 * 119.99653 * 0.02562 * 18 16 14 38 38 H 1.08004 * 125.88962 * 359.97438 * 20 19 18 39 39 H 1.08997 * 109.47250 * 180.02562 * 25 23 22 40 40 H 1.08995 * 109.47343 * 300.00309 * 25 23 22 41 41 H 1.08996 * 109.46903 * 60.00494 * 25 23 22 42 42 H 1.09006 * 115.55233 * 34.32866 * 26 23 22 43 43 H 1.09008 * 117.49866 * 359.97438 * 27 26 23 44 44 H 1.09000 * 117.50016 * 145.01902 * 27 26 23 45 45 H 1.08997 * 117.50304 * 252.51344 * 28 27 26 46 46 H 1.09005 * 117.51748 * 107.47364 * 28 27 26 47 47 H 1.07998 * 126.17773 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1412 0.9802 -1.2733 8 7 3.4096 0.7116 -2.3326 9 14 5.9918 0.7329 -1.3291 10 1 6.3290 -0.6065 -0.7837 11 1 6.4617 0.8277 -2.7346 12 1 6.6561 1.7810 -0.5134 13 7 1.6504 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3408 2.6321 0.4293 16 6 0.0360 3.3340 2.6385 17 8 0.8099 3.3666 3.5733 18 7 -1.1817 3.9005 2.7516 19 6 -1.5552 4.5292 3.9509 20 6 -0.7688 4.6368 5.1083 21 7 -1.4557 5.2899 6.0100 22 7 -2.7046 5.6130 5.4648 23 6 -3.7795 6.3392 6.1457 24 1 -3.6767 6.2137 7.2236 25 6 -5.1333 5.7873 5.6947 26 6 -3.6924 7.8259 5.7948 27 6 -3.2893 8.7926 6.9100 28 6 -4.7355 8.7598 6.4118 29 6 -2.7446 5.1366 4.1999 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8311 0.3854 -3.1431 36 1 2.2702 2.1278 1.9964 37 1 -1.8003 3.8734 2.0050 38 1 0.2316 4.2491 5.2324 39 1 -5.9330 6.3279 6.2010 40 1 -5.2360 5.9128 4.6169 41 1 -5.1954 4.7282 5.9448 42 1 -3.3499 8.0513 4.7848 43 1 -3.0866 8.3695 7.8940 44 1 -2.6814 9.6542 6.6340 45 1 -5.0790 9.5996 5.8078 46 1 -5.4841 8.3149 7.0674 47 1 -3.5724 5.2238 3.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188817353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:30 Heat of formation + Delta-G solvation = 33.185653 kcal Electronic energy + Delta-G solvation = -28229.376712 eV Core-core repulsion = 24222.080678 eV Total energy + Delta-G solvation = -4007.296034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59686 -40.08620 -38.47835 -37.95906 -35.47016 -34.70487 -33.57334 -32.36617 -31.07604 -29.91609 -29.08874 -27.25618 -25.31636 -24.22533 -22.90968 -22.76718 -22.15762 -21.31492 -20.33725 -19.92433 -19.41114 -18.21329 -17.83448 -16.34011 -16.28130 -15.86949 -15.65847 -15.51605 -15.22311 -14.99862 -14.42932 -14.27706 -14.17744 -13.79822 -13.58404 -13.30126 -13.03090 -12.83369 -12.75171 -12.50100 -12.13539 -11.92877 -11.68018 -11.54740 -11.42493 -11.16054 -11.01523 -10.97184 -10.92070 -10.79770 -10.76077 -10.54140 -10.39923 -10.25997 -9.75678 -9.50888 -9.18396 -8.99569 -8.53232 -8.04803 -7.79891 -6.18908 -4.24349 1.48508 1.97237 2.12145 2.85055 2.86048 3.25518 3.26706 3.32220 3.34814 3.80743 4.02556 4.17720 4.26914 4.36316 4.42503 4.54691 4.57733 4.64406 4.82014 4.93713 5.06810 5.14628 5.16257 5.16879 5.32004 5.40831 5.46004 5.50764 5.58409 5.63594 5.70760 6.08996 6.27264 6.30501 6.49724 6.74245 6.85112 6.91292 7.01717 7.14910 7.22919 7.24791 7.47279 7.60900 7.64624 7.73291 7.98180 8.02336 8.47593 8.65722 8.88635 9.41021 10.89241 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.002077 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.525731 B =13478.797283 C =13982.238238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.266 3.734 4 H 0.061 0.939 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.497 3.503 15 O -0.531 6.531 16 C 0.508 3.492 17 O -0.515 6.515 18 N -0.620 5.620 19 C 0.002 3.998 20 C 0.053 3.947 21 N -0.285 5.285 22 N -0.362 5.362 23 C 0.197 3.803 24 H 0.102 0.898 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.171 4.171 28 C -0.169 4.169 29 C 0.021 3.979 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.421 0.579 38 H 0.207 0.793 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.777 11.733 15.363 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.165 3.835 4 H 0.079 0.921 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.316 5.316 14 C 0.276 3.724 15 O -0.410 6.410 16 C 0.290 3.710 17 O -0.390 6.390 18 N -0.267 5.267 19 C -0.102 4.102 20 C -0.134 4.134 21 N -0.106 5.106 22 N -0.146 5.146 23 C 0.095 3.905 24 H 0.120 0.880 25 C -0.220 4.220 26 C -0.192 4.192 27 C -0.208 4.208 28 C -0.206 4.206 29 C -0.127 4.127 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.258 0.742 38 H 0.224 0.776 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.798 12.137 16.342 27.040 hybrid contribution 0.961 -0.453 -1.077 1.513 sum -16.836 11.684 15.265 25.554 Atomic orbital electron populations 1.21861 0.98002 0.98521 1.01336 1.21876 0.93006 0.99487 1.01656 1.19012 0.94899 0.89112 0.80465 0.92082 1.21159 0.90205 1.44334 1.02062 0.91740 1.24876 0.98676 0.94974 0.94870 1.69977 1.35866 1.43611 1.02150 0.86482 0.84707 0.78836 0.77253 1.20343 1.21171 1.19797 1.46428 1.13405 1.52530 1.19249 1.19555 0.84492 0.81376 0.86992 1.90738 1.51346 1.59535 1.39375 1.20840 0.81418 0.79191 0.89528 1.90604 1.50970 1.57438 1.39994 1.42493 1.16631 1.53691 1.13852 1.17775 0.95453 1.07470 0.89533 1.24572 1.01329 0.98135 0.89365 1.77400 0.91331 1.19293 1.22609 1.48279 1.12481 1.44168 1.09696 1.20718 0.83984 0.88254 0.97530 0.87989 1.22164 0.94778 1.02078 1.03023 1.22687 1.05884 0.91121 0.99469 1.23047 0.97658 1.01560 0.98528 1.22984 0.92553 1.01491 1.03599 1.21690 0.99005 1.02616 0.89377 0.94293 0.92769 0.95437 0.89813 0.94317 0.92463 0.76367 0.74186 0.77647 0.89935 0.91242 0.91260 0.87189 0.88357 0.88536 0.88317 0.88373 0.80751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.60 16 2 C -0.12 -2.81 5.50 -26.73 -0.15 -2.95 16 3 C 0.27 6.49 2.11 -69.09 -0.15 6.34 16 4 H 0.06 1.70 7.52 -51.93 -0.39 1.31 16 5 C -0.54 -14.04 8.66 -34.44 -0.30 -14.34 16 6 H 0.06 1.63 7.73 -52.49 -0.41 1.23 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.25 12.16 55.43 0.67 -23.57 16 9 Si 0.90 20.46 29.55 -169.99 -5.02 15.44 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.67 -13.93 5.02 -55.41 -0.28 -14.21 16 14 C 0.50 9.64 6.45 -11.64 -0.08 9.57 16 15 O -0.53 -11.10 13.61 5.49 0.07 -11.03 16 16 C 0.51 8.54 7.86 -11.64 -0.09 8.45 16 17 O -0.52 -9.22 13.63 5.45 0.07 -9.14 16 18 N -0.62 -8.58 5.45 -10.48 -0.06 -8.64 16 19 C 0.00 0.03 6.90 -83.96 -0.58 -0.55 16 20 C 0.05 0.77 10.84 -17.19 -0.19 0.59 16 21 N -0.29 -3.94 12.56 30.72 0.39 -3.55 16 22 N -0.36 -3.87 3.53 -54.65 -0.19 -4.07 16 23 C 0.20 1.44 3.55 -67.93 -0.24 1.20 16 24 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 25 C -0.16 -0.80 8.68 37.16 0.32 -0.48 16 26 C -0.17 -1.16 5.45 -90.62 -0.49 -1.66 16 27 C -0.17 -1.09 10.18 -26.73 -0.27 -1.36 16 28 C -0.17 -0.81 9.73 -26.73 -0.26 -1.07 16 29 C 0.02 0.22 10.63 -16.91 -0.18 0.04 16 30 H 0.04 0.79 5.65 -51.93 -0.29 0.49 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 2.12 6.80 -51.93 -0.35 1.77 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.40 7.89 7.99 -40.82 -0.33 7.56 16 37 H 0.42 5.06 8.29 -40.82 -0.34 4.72 16 38 H 0.21 3.17 5.92 -52.48 -0.31 2.86 16 39 H 0.08 0.27 7.29 -51.93 -0.38 -0.11 16 40 H 0.07 0.31 7.16 -51.93 -0.37 -0.06 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.61 8.05 -51.92 -0.42 0.19 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.35 7.61 -51.93 -0.39 -0.04 16 47 H 0.18 1.21 7.27 -52.49 -0.38 0.83 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -30.32 387.20 -7.78 -38.10 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.85 Total: 11.88 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.42 Total: 2.96 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.53 Total: -54.04 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.15 Total: -20.17 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.32 -7.78 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188817353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.284 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds