Wall clock time and date at job start Tue Mar 31 2020 19:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46780 * 2 1 4 4 H 1.09003 * 109.47544 * 304.89905 * 3 2 1 5 5 C 1.50703 * 109.47065 * 184.90277 * 3 2 1 6 6 H 1.08000 * 120.00264 * 245.45926 * 5 3 2 7 7 C 1.37880 * 120.00136 * 65.45104 * 5 3 2 8 8 N 1.31515 * 119.99551 * 9.47152 * 7 5 3 9 9 Si 1.86795 * 120.00260 * 189.47052 * 7 5 3 10 10 H 1.48501 * 109.47004 * 84.99319 * 9 7 5 11 11 H 1.48496 * 109.47293 * 204.99676 * 9 7 5 12 12 H 1.48494 * 109.47212 * 324.99673 * 9 7 5 13 13 N 1.46494 * 109.47244 * 64.90498 * 3 2 1 14 14 C 1.34779 * 119.99910 * 274.99646 * 13 3 2 15 15 O 1.21356 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.49333 * 119.99855 * 180.02562 * 14 13 3 17 17 O 1.21400 * 119.99922 * 359.97438 * 16 14 13 18 18 N 1.34779 * 119.99855 * 180.02562 * 16 14 13 19 19 C 1.40472 * 120.00129 * 179.97438 * 18 16 14 20 20 C 1.40344 * 126.11588 * 359.68559 * 19 18 16 21 21 N 1.30825 * 108.20934 * 179.85225 * 20 19 18 22 22 N 1.40048 * 108.36622 * 0.41161 * 21 20 19 23 23 C 1.46501 * 125.99312 * 179.71215 * 22 21 20 24 24 H 1.08995 * 109.47218 * 335.02671 * 23 22 21 25 25 C 1.53002 * 109.47215 * 215.02285 * 23 22 21 26 26 C 1.53002 * 109.46935 * 95.02846 * 23 22 21 27 27 C 1.52997 * 117.49833 * 248.62305 * 26 23 22 28 28 C 1.52996 * 60.00191 * 252.50647 * 27 26 23 29 29 C 1.35230 * 108.01324 * 359.73504 * 22 21 20 30 30 H 1.08999 * 109.47052 * 299.99911 * 1 2 3 31 31 H 1.08995 * 109.47548 * 59.99770 * 1 2 3 32 32 H 1.09005 * 109.47412 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46763 * 240.00350 * 2 1 3 34 34 H 1.08995 * 109.47548 * 120.00230 * 2 1 3 35 35 H 0.97005 * 119.99927 * 179.97438 * 8 7 5 36 36 H 0.97003 * 120.00505 * 95.27265 * 13 3 2 37 37 H 0.97000 * 119.99653 * 0.02562 * 18 16 14 38 38 H 1.08004 * 125.88962 * 359.97438 * 20 19 18 39 39 H 1.08997 * 109.47250 * 180.02562 * 25 23 22 40 40 H 1.08995 * 109.47343 * 300.00309 * 25 23 22 41 41 H 1.08996 * 109.46903 * 60.00494 * 25 23 22 42 42 H 1.09006 * 115.55233 * 34.32866 * 26 23 22 43 43 H 1.09008 * 117.49866 * 359.97438 * 27 26 23 44 44 H 1.09000 * 117.50016 * 145.01902 * 27 26 23 45 45 H 1.08997 * 117.50304 * 252.51344 * 28 27 26 46 46 H 1.09005 * 117.51748 * 107.47364 * 28 27 26 47 47 H 1.07998 * 126.17773 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5420 1.4443 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1412 0.9802 -1.2733 8 7 3.4096 0.7116 -2.3326 9 14 5.9918 0.7329 -1.3291 10 1 6.3290 -0.6065 -0.7837 11 1 6.4617 0.8277 -2.7346 12 1 6.6561 1.7810 -0.5134 13 7 1.6504 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3408 2.6321 0.4293 16 6 0.0360 3.3340 2.6385 17 8 0.8099 3.3666 3.5733 18 7 -1.1817 3.9005 2.7516 19 6 -1.5552 4.5292 3.9509 20 6 -0.7688 4.6368 5.1083 21 7 -1.4557 5.2899 6.0100 22 7 -2.7046 5.6130 5.4648 23 6 -3.7795 6.3392 6.1457 24 1 -3.6767 6.2137 7.2236 25 6 -5.1333 5.7873 5.6947 26 6 -3.6924 7.8259 5.7948 27 6 -3.2893 8.7926 6.9100 28 6 -4.7355 8.7598 6.4118 29 6 -2.7446 5.1366 4.1999 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8311 0.3854 -3.1431 36 1 2.2702 2.1278 1.9964 37 1 -1.8003 3.8734 2.0050 38 1 0.2316 4.2491 5.2324 39 1 -5.9330 6.3279 6.2010 40 1 -5.2360 5.9128 4.6169 41 1 -5.1954 4.7282 5.9448 42 1 -3.3499 8.0513 4.7848 43 1 -3.0866 8.3695 7.8940 44 1 -2.6814 9.6542 6.6340 45 1 -5.0790 9.5996 5.8078 46 1 -5.4841 8.3149 7.0674 47 1 -3.5724 5.2238 3.5117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188817353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:29 Heat of formation + Delta-G solvation = 13.314469 kcal Electronic energy + Delta-G solvation = -28230.238391 eV Core-core repulsion = 24222.080678 eV Total energy + Delta-G solvation = -4008.157713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.59744 -41.47134 -39.69645 -38.78546 -37.15899 -35.95816 -34.35978 -34.22125 -32.86127 -30.79592 -29.98820 -29.10333 -26.42371 -25.32749 -24.60205 -23.21373 -23.07569 -22.47873 -21.56156 -21.20605 -20.77121 -19.59908 -18.81603 -18.05297 -17.58811 -17.10677 -16.87656 -16.68560 -16.33365 -16.20809 -15.86716 -15.52186 -15.09799 -14.97032 -14.80042 -14.60215 -14.13850 -13.90798 -13.84484 -13.44285 -13.35013 -13.28911 -12.97038 -12.95488 -12.65267 -12.49921 -12.39292 -12.27798 -12.15151 -12.11013 -11.89182 -11.81659 -11.60472 -11.42592 -11.13005 -11.02659 -10.56373 -10.50148 -10.42007 -9.81824 -8.83124 -8.20758 -6.32927 0.26064 0.87522 1.19912 1.45707 1.46824 1.55606 1.63973 1.71877 2.37045 2.41739 2.80126 2.87414 3.11287 3.51896 3.57422 3.69169 3.81166 3.96929 4.01374 4.06889 4.19590 4.33956 4.48304 4.49362 4.53758 4.59023 4.70174 4.71392 4.79341 4.90103 4.95715 4.99281 5.04933 5.15260 5.22316 5.23289 5.23765 5.37326 5.40306 5.57776 5.65733 5.70948 5.77219 6.01042 6.02705 6.11177 6.55222 6.70098 6.71374 6.90347 7.15926 7.37916 8.87602 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.002077 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.525731 B =13478.797283 C =13982.238238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.275 3.725 4 H 0.020 0.980 5 C -0.555 4.555 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.672 5.672 14 C 0.499 3.501 15 O -0.547 6.547 16 C 0.512 3.488 17 O -0.530 6.530 18 N -0.599 5.599 19 C -0.031 4.031 20 C 0.035 3.965 21 N -0.310 5.310 22 N -0.352 5.352 23 C 0.189 3.811 24 H 0.101 0.899 25 C -0.158 4.158 26 C -0.182 4.182 27 C -0.188 4.188 28 C -0.143 4.143 29 C 0.052 3.948 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.267 0.733 36 H 0.408 0.592 37 H 0.431 0.569 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.796 12.514 16.470 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.172 3.828 4 H 0.037 0.963 5 C -0.593 4.593 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.321 5.321 14 C 0.279 3.721 15 O -0.426 6.426 16 C 0.293 3.707 17 O -0.406 6.406 18 N -0.246 5.246 19 C -0.135 4.135 20 C -0.151 4.151 21 N -0.133 5.133 22 N -0.136 5.136 23 C 0.089 3.911 24 H 0.119 0.881 25 C -0.216 4.216 26 C -0.201 4.201 27 C -0.225 4.225 28 C -0.181 4.181 29 C -0.097 4.097 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.270 0.730 38 H 0.207 0.793 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.126 0.874 46 H 0.134 0.866 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -19.858 12.949 17.493 29.462 hybrid contribution 1.434 -0.560 -1.345 2.044 sum -18.424 12.389 16.148 27.453 Atomic orbital electron populations 1.21715 0.96184 0.99883 1.00691 1.21734 0.94578 0.98401 1.00711 1.18631 0.94073 0.89489 0.80580 0.96255 1.21490 0.91247 1.44249 1.02268 0.91396 1.25678 1.02979 0.94653 0.94504 1.70096 1.37645 1.44393 1.02661 0.85467 0.79449 0.78952 0.77157 1.19610 1.21074 1.19269 1.46207 1.14384 1.53153 1.18366 1.19940 0.83648 0.80657 0.87819 1.90723 1.51648 1.59892 1.40347 1.20169 0.82473 0.79875 0.88135 1.90618 1.51692 1.58404 1.39935 1.42236 1.15489 1.52412 1.14482 1.17901 0.96753 1.09824 0.89028 1.24401 1.01264 0.98981 0.90411 1.77354 0.92825 1.20007 1.23068 1.48720 1.12026 1.42988 1.09852 1.21098 0.84093 0.88511 0.97409 0.88143 1.22192 0.93502 1.01959 1.03910 1.22601 1.07729 0.90821 0.98946 1.23108 0.99442 1.01526 0.98417 1.23083 0.91762 1.00618 1.02606 1.22273 0.98668 0.99453 0.89347 0.93771 0.94451 0.93026 0.92321 0.93487 0.92423 0.75651 0.73046 0.79313 0.87652 0.90248 0.91674 0.88224 0.88536 0.89053 0.87374 0.86586 0.76681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.51 71.98 0.61 -4.68 16 2 C -0.12 -5.41 5.50 30.59 0.17 -5.24 16 3 C 0.27 13.75 2.11 44.25 0.09 13.85 16 4 H 0.02 1.14 7.52 -2.39 -0.02 1.12 16 5 C -0.55 -29.32 8.66 25.60 0.22 -29.10 16 6 H 0.07 3.46 7.73 -2.91 -0.02 3.44 16 7 C 0.02 1.23 5.16 84.66 0.44 1.67 16 8 N -0.91 -51.31 12.16 21.45 0.26 -51.05 16 9 Si 0.96 42.15 29.55 68.60 2.03 44.17 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.67 -28.57 5.02 -447.56 -2.24 -30.81 16 14 C 0.50 19.55 6.45 87.23 0.56 20.11 16 15 O -0.55 -23.05 13.61 -3.27 -0.04 -23.09 16 16 C 0.51 17.23 7.86 87.23 0.69 17.91 16 17 O -0.53 -19.25 13.63 -3.40 -0.05 -19.30 16 18 N -0.60 -16.04 5.45 -305.41 -1.67 -17.71 16 19 C -0.03 -0.79 6.90 37.71 0.26 -0.53 16 20 C 0.04 1.04 10.84 85.36 0.93 1.96 16 21 N -0.31 -8.47 12.56 -56.71 -0.71 -9.18 16 22 N -0.35 -6.91 3.53 -326.82 -1.15 -8.06 16 23 C 0.19 2.31 3.55 44.99 0.16 2.47 16 24 H 0.10 1.29 7.90 -2.39 -0.02 1.27 16 25 C -0.16 -0.98 8.68 71.98 0.62 -0.35 16 26 C -0.18 -2.05 5.45 -10.79 -0.06 -2.11 16 27 C -0.19 -2.12 10.18 30.59 0.31 -1.81 16 28 C -0.14 -0.93 9.73 30.59 0.30 -0.64 16 29 C 0.05 0.95 10.63 83.62 0.89 1.83 16 30 H 0.04 1.76 5.65 -2.39 -0.01 1.75 16 31 H 0.04 1.65 7.84 -2.39 -0.02 1.63 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.85 16 33 H 0.06 3.04 6.80 -2.38 -0.02 3.03 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 36 H 0.41 16.28 7.99 -92.71 -0.74 15.54 16 37 H 0.43 9.69 8.29 -92.71 -0.77 8.93 16 38 H 0.19 6.10 5.92 -2.91 -0.02 6.08 16 39 H 0.10 0.22 7.29 -2.39 -0.02 0.20 16 40 H 0.08 0.36 7.16 -2.39 -0.02 0.35 16 41 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.10 1.11 8.05 -2.38 -0.02 1.09 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.12 0.36 7.61 -2.38 -0.02 0.35 16 47 H 0.22 2.02 7.27 -2.91 -0.02 2.00 16 Total: -1.00 -67.30 387.20 2.11 -65.18 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.49 Total: 34.49 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 6.19 Total: 15.36 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.52 Total: -116.82 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -0.09 Total: -42.39 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.30 2.11 -65.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188817353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.496 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds