Wall clock time and date at job start Tue Mar 31 2020 19:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 H 1.08998 * 109.46948 * 55.00126 * 3 2 1 5 5 C 1.50705 * 109.47021 * 175.00103 * 3 2 1 6 6 H 1.08000 * 119.99976 * 120.00285 * 5 3 2 7 7 C 1.37878 * 119.99735 * 299.99796 * 5 3 2 8 8 N 1.31515 * 119.99678 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00243 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47584 * 89.99556 * 9 7 5 11 11 H 1.48504 * 109.46959 * 209.99661 * 9 7 5 12 12 H 1.48503 * 109.46857 * 329.99389 * 9 7 5 13 13 N 1.46502 * 109.47273 * 295.00138 * 3 2 1 14 14 C 1.34769 * 119.99953 * 84.99750 * 13 3 2 15 15 O 1.21586 * 120.00233 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00225 * 180.02562 * 14 13 3 17 17 C 1.39632 * 120.00311 * 185.09418 * 16 14 13 18 18 C 1.39017 * 119.61883 * 174.91035 * 17 16 14 19 19 C 1.38312 * 119.17879 * 179.70260 * 18 17 16 20 20 C 1.39396 * 118.43238 * 0.57903 * 19 18 17 21 21 N 1.39969 * 120.41700 * 179.70991 * 20 19 18 22 22 C 1.47009 * 111.00081 * 179.72447 * 21 20 19 23 23 C 1.53095 * 109.25524 * 177.61173 * 22 21 20 24 24 O 1.43011 * 109.26088 * 56.85252 * 23 22 21 25 25 C 1.43018 * 113.73365 * 301.32636 * 24 23 22 26 26 C 1.47019 * 110.99552 * 56.09369 * 21 20 19 27 27 C 1.38698 * 119.16744 * 359.44167 * 20 19 18 28 28 N 1.31936 * 120.74450 * 0.27457 * 27 20 19 29 29 H 1.08996 * 109.46970 * 59.99872 * 1 2 3 30 30 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46830 * 299.99715 * 1 2 3 32 32 H 1.09002 * 109.47240 * 240.00033 * 2 1 3 33 33 H 1.08996 * 109.46970 * 120.00128 * 2 1 3 34 34 H 0.96999 * 119.99524 * 180.02562 * 8 7 5 35 35 H 0.96995 * 119.99955 * 265.00046 * 13 3 2 36 36 H 0.96995 * 119.99493 * 5.08961 * 16 14 13 37 37 H 1.07997 * 120.40741 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.78129 * 180.31753 * 19 18 17 39 39 H 1.09003 * 109.50876 * 57.68018 * 22 21 20 40 40 H 1.09000 * 109.50974 * 297.54423 * 22 21 20 41 41 H 1.09004 * 109.50922 * 176.78731 * 23 22 21 42 42 H 1.09001 * 109.50655 * 296.86509 * 23 22 21 43 43 H 1.09011 * 109.50392 * 178.60706 * 25 24 23 44 44 H 1.09001 * 109.50894 * 298.73439 * 25 24 23 45 45 H 1.08996 * 109.50948 * 62.45454 * 26 21 20 46 46 H 1.09000 * 109.53989 * 302.34713 * 26 21 20 47 47 H 1.07999 * 119.62704 * 180.29452 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1089 2.5701 10 1 2.8754 -1.3272 2.2634 11 1 3.7938 0.2348 3.8751 12 1 1.7878 0.8075 2.6387 13 7 1.6525 2.0976 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4317 16 7 0.0784 3.2666 -2.5187 17 6 -1.1387 3.9457 -2.6036 18 6 -1.4516 4.6531 -3.7587 19 6 -2.6623 5.3174 -3.8355 20 6 -3.5212 5.2607 -2.7390 21 7 -4.7540 5.9227 -2.7695 22 6 -5.4918 5.7206 -1.5141 23 6 -6.8035 6.5082 -1.5670 24 8 -7.5566 6.0942 -2.7101 25 6 -6.8682 6.2776 -3.9502 26 6 -5.5572 5.4876 -3.9215 27 6 -3.1411 4.5353 -1.6196 28 7 -1.9805 3.9089 -1.5837 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.8771 0.4810 2.1124 35 1 2.2719 2.1232 -1.9977 36 1 0.6672 3.2283 -3.2886 37 1 -0.7601 4.6793 -4.5879 38 1 -2.9340 5.8706 -4.7225 39 1 -4.8891 6.0730 -0.6770 40 1 -5.7089 4.6601 -1.3862 41 1 -7.3802 6.3160 -0.6621 42 1 -6.5856 7.5737 -1.6401 43 1 -7.4917 5.9185 -4.7691 44 1 -6.6522 7.3363 -4.0935 45 1 -5.7753 4.4234 -3.8321 46 1 -5.0026 5.6693 -4.8421 47 1 -3.8029 4.4824 -0.7677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194933483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:41 Heat of formation + Delta-G solvation = 1.848467 kcal Electronic energy + Delta-G solvation = -28841.477193 eV Core-core repulsion = 24832.822277 eV Total energy + Delta-G solvation = -4008.654916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11163 -39.98900 -38.89310 -36.56165 -35.35805 -34.05088 -32.56023 -32.33578 -31.56227 -31.39634 -29.55009 -27.53646 -26.54173 -25.28796 -23.27247 -22.99226 -22.45168 -21.08252 -20.79372 -19.75386 -18.45614 -18.09093 -17.53733 -16.70633 -16.34142 -15.88357 -15.71552 -15.56515 -15.51389 -15.15349 -14.90401 -14.69217 -14.36574 -14.12594 -13.72887 -13.46309 -13.33680 -13.00224 -12.82066 -12.61059 -12.42968 -11.96150 -11.90604 -11.76972 -11.75961 -11.18957 -11.07656 -10.94408 -10.81222 -10.60649 -10.16624 -9.98054 -9.88957 -9.84666 -9.49767 -9.30093 -9.19785 -8.79493 -8.73906 -8.06716 -7.63118 -6.20175 -4.22411 1.05939 1.26474 2.87297 3.21263 3.25414 3.37380 3.43292 3.43797 3.60805 4.08147 4.32479 4.33496 4.39543 4.48836 4.56158 4.69158 4.71736 4.77564 4.83330 4.92684 5.05209 5.12811 5.14049 5.18108 5.31592 5.36884 5.46210 5.52101 5.69988 5.73127 6.02386 6.07687 6.09110 6.22135 6.49439 6.63308 6.65180 6.67963 6.73696 6.83129 6.91452 7.02936 7.11409 7.34869 7.42321 7.54748 8.07104 8.33482 8.66903 8.80095 9.20096 9.41728 10.91834 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002324 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.343742 B =12047.224327 C =12600.982386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 C 0.261 3.739 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.715 5.715 14 C 0.684 3.316 15 O -0.533 6.533 16 N -0.676 5.676 17 C 0.372 3.628 18 C -0.192 4.192 19 C -0.063 4.063 20 C 0.007 3.993 21 N -0.478 5.478 22 C 0.009 3.991 23 C 0.064 3.936 24 O -0.385 6.385 25 C 0.063 3.937 26 C 0.018 3.982 27 C 0.095 3.905 28 N -0.447 5.447 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.390 0.610 36 H 0.409 0.591 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.091 0.909 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.760 10.476 -13.680 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.157 3.843 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.367 5.367 14 C 0.383 3.617 15 O -0.405 6.405 16 N -0.325 5.325 17 C 0.138 3.862 18 C -0.217 4.217 19 C -0.091 4.091 20 C -0.093 4.093 21 N -0.196 5.196 22 C -0.119 4.119 23 C -0.013 4.013 24 O -0.303 6.303 25 C -0.014 4.014 26 C -0.108 4.108 27 C -0.067 4.067 28 N -0.161 5.161 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.223 0.777 36 H 0.245 0.755 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.109 0.891 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.101 10.284 -11.894 27.124 hybrid contribution 0.337 -0.690 -0.713 1.048 sum -21.765 9.594 -12.607 26.920 Atomic orbital electron populations 1.21844 0.96777 0.98787 1.02440 1.22311 0.94480 1.00046 1.00960 1.19046 0.95330 0.88139 0.81797 0.93245 1.21042 0.88600 1.39743 1.07824 0.90228 1.24820 0.94877 0.95154 0.97662 1.69867 1.08682 1.44557 1.29851 0.86902 0.81049 0.79952 0.80843 1.20257 1.22208 1.18324 1.45459 1.13439 1.59136 1.18710 1.16170 0.83617 0.79347 0.82567 1.91007 1.50950 1.61438 1.37120 1.42985 1.18699 1.55338 1.15435 1.18221 0.86708 0.91266 0.89997 1.21313 0.99104 1.02531 0.98766 1.20872 0.92405 0.97984 0.97817 1.19805 0.93527 0.98865 0.97140 1.59496 1.02116 1.53974 1.03992 1.23002 0.95854 1.00564 0.92433 1.22708 0.91061 0.98219 0.89316 1.88009 1.42072 1.85644 1.14581 1.22702 0.92052 0.99708 0.86951 1.22961 0.94926 0.98896 0.94042 1.22912 0.93664 0.92480 0.97609 1.67700 1.02360 1.19223 1.26799 0.92911 0.95241 0.92817 0.92418 0.92825 0.92295 0.77715 0.75512 0.84523 0.84596 0.88532 0.92449 0.87898 0.91997 0.88103 0.92036 0.92960 0.89071 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.14 -3.13 5.11 -26.73 -0.14 -3.26 16 3 C 0.26 6.20 1.83 -69.08 -0.13 6.07 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.53 -14.38 9.31 -34.44 -0.32 -14.70 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 9 Si 0.88 21.91 24.41 -169.99 -4.15 17.76 16 10 H -0.28 -6.63 6.83 56.52 0.39 -6.25 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.04 16 13 N -0.71 -14.08 5.03 -59.81 -0.30 -14.38 16 14 C 0.68 13.23 7.09 -86.92 -0.62 12.61 16 15 O -0.53 -12.25 11.74 5.29 0.06 -12.19 16 16 N -0.68 -9.94 5.40 -15.77 -0.09 -10.03 16 17 C 0.37 5.46 7.43 -154.53 -1.15 4.31 16 18 C -0.19 -2.05 9.93 -39.27 -0.39 -2.44 16 19 C -0.06 -0.61 9.32 -39.12 -0.36 -0.98 16 20 C 0.01 0.07 5.66 -83.54 -0.47 -0.40 16 21 N -0.48 -4.34 4.79 -170.63 -0.82 -5.16 16 22 C 0.01 0.07 4.34 -3.72 -0.02 0.06 16 23 C 0.06 0.45 7.01 37.21 0.26 0.71 16 24 O -0.38 -3.34 10.83 -35.23 -0.38 -3.72 16 25 C 0.06 0.41 7.01 37.20 0.26 0.67 16 26 C 0.02 0.13 5.41 -3.71 -0.02 0.11 16 27 C 0.09 1.28 10.00 -17.34 -0.17 1.10 16 28 N -0.45 -7.57 7.88 -12.17 -0.10 -7.66 16 29 H 0.05 1.10 5.64 -51.93 -0.29 0.81 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.39 6.61 8.56 -40.82 -0.35 6.26 16 36 H 0.41 4.33 8.72 -40.82 -0.36 3.98 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.14 0.96 7.27 -52.48 -0.38 0.58 16 39 H 0.10 0.75 7.25 -51.93 -0.38 0.37 16 40 H 0.06 0.50 7.55 -51.93 -0.39 0.11 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.53 6.91 -51.93 -0.36 0.17 16 47 H 0.16 1.85 5.82 -52.49 -0.31 1.54 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -34.82 364.65 -9.26 -44.08 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.72 Total: 8.11 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.04 Total: 3.35 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.52 Total: -62.89 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.32 Total: -15.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.15 Total: 17.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.82 -9.26 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194933483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.925 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds