Wall clock time and date at job start Tue Mar 31 2020 19:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 H 1.08998 * 109.46948 * 55.00126 * 3 2 1 5 5 C 1.50705 * 109.47021 * 175.00103 * 3 2 1 6 6 H 1.08000 * 119.99976 * 120.00285 * 5 3 2 7 7 C 1.37878 * 119.99735 * 299.99796 * 5 3 2 8 8 N 1.31515 * 119.99678 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00243 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47584 * 89.99556 * 9 7 5 11 11 H 1.48504 * 109.46959 * 209.99661 * 9 7 5 12 12 H 1.48503 * 109.46857 * 329.99389 * 9 7 5 13 13 N 1.46502 * 109.47273 * 295.00138 * 3 2 1 14 14 C 1.34769 * 119.99953 * 84.99750 * 13 3 2 15 15 O 1.21586 * 120.00233 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00225 * 180.02562 * 14 13 3 17 17 C 1.39632 * 120.00311 * 185.09418 * 16 14 13 18 18 C 1.39017 * 119.61883 * 174.91035 * 17 16 14 19 19 C 1.38312 * 119.17879 * 179.70260 * 18 17 16 20 20 C 1.39396 * 118.43238 * 0.57903 * 19 18 17 21 21 N 1.39969 * 120.41700 * 179.70991 * 20 19 18 22 22 C 1.47009 * 111.00081 * 179.72447 * 21 20 19 23 23 C 1.53095 * 109.25524 * 177.61173 * 22 21 20 24 24 O 1.43011 * 109.26088 * 56.85252 * 23 22 21 25 25 C 1.43018 * 113.73365 * 301.32636 * 24 23 22 26 26 C 1.47019 * 110.99552 * 56.09369 * 21 20 19 27 27 C 1.38698 * 119.16744 * 359.44167 * 20 19 18 28 28 N 1.31936 * 120.74450 * 0.27457 * 27 20 19 29 29 H 1.08996 * 109.46970 * 59.99872 * 1 2 3 30 30 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46830 * 299.99715 * 1 2 3 32 32 H 1.09002 * 109.47240 * 240.00033 * 2 1 3 33 33 H 1.08996 * 109.46970 * 120.00128 * 2 1 3 34 34 H 0.96999 * 119.99524 * 180.02562 * 8 7 5 35 35 H 0.96995 * 119.99955 * 265.00046 * 13 3 2 36 36 H 0.96995 * 119.99493 * 5.08961 * 16 14 13 37 37 H 1.07997 * 120.40741 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.78129 * 180.31753 * 19 18 17 39 39 H 1.09003 * 109.50876 * 57.68018 * 22 21 20 40 40 H 1.09000 * 109.50974 * 297.54423 * 22 21 20 41 41 H 1.09004 * 109.50922 * 176.78731 * 23 22 21 42 42 H 1.09001 * 109.50655 * 296.86509 * 23 22 21 43 43 H 1.09011 * 109.50392 * 178.60706 * 25 24 23 44 44 H 1.09001 * 109.50894 * 298.73439 * 25 24 23 45 45 H 1.08996 * 109.50948 * 62.45454 * 26 21 20 46 46 H 1.09000 * 109.53989 * 302.34713 * 26 21 20 47 47 H 1.07999 * 119.62704 * 180.29452 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1089 2.5701 10 1 2.8754 -1.3272 2.2634 11 1 3.7938 0.2348 3.8751 12 1 1.7878 0.8075 2.6387 13 7 1.6525 2.0976 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4317 16 7 0.0784 3.2666 -2.5187 17 6 -1.1387 3.9457 -2.6036 18 6 -1.4516 4.6531 -3.7587 19 6 -2.6623 5.3174 -3.8355 20 6 -3.5212 5.2607 -2.7390 21 7 -4.7540 5.9227 -2.7695 22 6 -5.4918 5.7206 -1.5141 23 6 -6.8035 6.5082 -1.5670 24 8 -7.5566 6.0942 -2.7101 25 6 -6.8682 6.2776 -3.9502 26 6 -5.5572 5.4876 -3.9215 27 6 -3.1411 4.5353 -1.6196 28 7 -1.9805 3.9089 -1.5837 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.8771 0.4810 2.1124 35 1 2.2719 2.1232 -1.9977 36 1 0.6672 3.2283 -3.2886 37 1 -0.7601 4.6793 -4.5879 38 1 -2.9340 5.8706 -4.7225 39 1 -4.8891 6.0730 -0.6770 40 1 -5.7089 4.6601 -1.3862 41 1 -7.3802 6.3160 -0.6621 42 1 -6.5856 7.5737 -1.6401 43 1 -7.4917 5.9185 -4.7691 44 1 -6.6522 7.3363 -4.0935 45 1 -5.7753 4.4234 -3.8321 46 1 -5.0026 5.6693 -4.8421 47 1 -3.8029 4.4824 -0.7677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194933483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:40 Heat of formation + Delta-G solvation = -25.304823 kcal Electronic energy + Delta-G solvation = -28842.654648 eV Core-core repulsion = 24832.822277 eV Total energy + Delta-G solvation = -4009.832371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.05388 -41.10427 -39.91662 -37.66870 -36.76596 -35.34819 -34.35870 -33.41206 -33.04966 -32.17661 -30.52497 -29.32307 -27.42055 -26.05166 -24.73422 -24.02658 -23.69818 -22.42441 -21.56338 -21.39901 -19.95168 -19.12104 -18.45105 -18.21433 -17.39954 -17.29268 -16.74077 -16.59369 -16.30699 -16.18065 -15.91747 -15.81993 -15.44097 -15.19921 -15.06334 -14.92613 -14.75204 -14.26639 -14.04024 -13.78036 -13.64795 -13.55171 -13.23216 -12.96866 -12.77290 -12.53883 -12.43675 -12.33021 -12.03589 -11.83768 -11.62977 -11.40137 -11.24583 -11.20046 -11.04889 -10.85295 -10.66810 -10.32685 -9.87898 -9.73522 -8.60051 -8.38003 -6.42789 0.12350 0.38796 1.26846 1.35352 1.45860 1.63412 2.22947 2.26403 2.53377 2.91374 2.96711 3.00359 3.20125 3.65392 3.76388 3.84240 3.91317 3.97462 4.07923 4.14776 4.24495 4.26134 4.32047 4.33687 4.45691 4.49938 4.65374 4.67997 4.73175 4.76372 4.83102 4.90908 4.95369 4.97820 4.99977 5.11627 5.22144 5.25431 5.41944 5.50486 5.66873 5.69090 5.77588 5.89920 6.09032 6.14118 6.24756 6.59375 6.96513 7.20681 7.39652 7.76933 8.77029 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002324 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.343742 B =12047.224327 C =12600.982386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.136 4.136 3 C 0.270 3.730 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.259 1.259 11 H -0.293 1.293 12 H -0.263 1.263 13 N -0.713 5.713 14 C 0.685 3.315 15 O -0.574 6.574 16 N -0.662 5.662 17 C 0.334 3.666 18 C -0.169 4.169 19 C -0.060 4.060 20 C 0.022 3.978 21 N -0.479 5.479 22 C 0.007 3.993 23 C 0.066 3.934 24 O -0.404 6.404 25 C 0.061 3.939 26 C 0.018 3.982 27 C 0.068 3.932 28 N -0.498 5.498 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.270 0.730 35 H 0.403 0.597 36 H 0.429 0.571 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.113 0.887 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 11.160 -16.096 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.175 4.175 3 C 0.165 3.835 4 H 0.036 0.964 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.188 1.188 13 N -0.367 5.367 14 C 0.385 3.615 15 O -0.448 6.448 16 N -0.313 5.313 17 C 0.102 3.898 18 C -0.193 4.193 19 C -0.088 4.088 20 C -0.079 4.079 21 N -0.196 5.196 22 C -0.120 4.120 23 C -0.010 4.010 24 O -0.323 6.323 25 C -0.015 4.015 26 C -0.108 4.108 27 C -0.093 4.093 28 N -0.212 5.212 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.238 0.762 36 H 0.268 0.732 37 H 0.193 0.807 38 H 0.191 0.809 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.131 0.869 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.995 11.001 -14.383 30.061 hybrid contribution 0.811 -0.743 -0.076 1.102 sum -23.183 10.258 -14.460 29.185 Atomic orbital electron populations 1.21687 0.95427 1.00050 1.01335 1.22218 0.95548 0.98670 1.01019 1.18622 0.92999 0.89180 0.82712 0.96362 1.21264 0.90181 1.38437 1.06970 0.92292 1.25496 0.95705 0.95929 0.99741 1.69967 1.10138 1.46176 1.30857 0.86071 0.79271 0.80012 0.78476 1.18454 1.22078 1.18800 1.45132 1.14285 1.59428 1.17884 1.16237 0.82816 0.79102 0.83368 1.90981 1.51938 1.62865 1.39040 1.42606 1.19397 1.54741 1.14532 1.18555 0.86612 0.93310 0.91366 1.21655 0.99674 1.00057 0.97919 1.21314 0.91558 0.97509 0.98441 1.19965 0.94353 0.97051 0.96537 1.59552 1.01893 1.53177 1.04967 1.23031 0.96442 1.00266 0.92255 1.22772 0.90421 0.98214 0.89640 1.87988 1.42932 1.85871 1.15528 1.22873 0.91783 1.00154 0.86726 1.23072 0.95399 0.98361 0.93961 1.22959 0.93294 0.93934 0.99066 1.67481 1.03905 1.20908 1.28884 0.93181 0.92624 0.94814 0.91142 0.93823 0.92078 0.76152 0.73223 0.80749 0.80868 0.88663 0.93397 0.86607 0.91381 0.86176 0.91219 0.94095 0.86902 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 8.51 71.98 0.61 -4.63 16 2 C -0.14 -6.01 5.11 30.60 0.16 -5.85 16 3 C 0.27 12.99 1.83 44.25 0.08 13.07 16 4 H 0.02 1.01 6.63 -2.39 -0.02 0.99 16 5 C -0.53 -29.02 9.31 25.60 0.24 -28.78 16 6 H 0.06 3.40 7.98 -2.91 -0.02 3.38 16 7 C 0.03 1.77 5.45 84.65 0.46 2.23 16 8 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 9 Si 0.93 45.58 24.41 68.60 1.67 47.26 16 10 H -0.26 -11.85 6.83 99.48 0.68 -11.17 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 12 H -0.26 -12.96 6.53 99.48 0.65 -12.31 16 13 N -0.71 -28.15 5.03 -461.40 -2.32 -30.47 16 14 C 0.69 26.65 7.09 179.06 1.27 27.92 16 15 O -0.57 -27.03 11.74 -3.99 -0.05 -27.08 16 16 N -0.66 -18.87 5.40 -322.06 -1.74 -20.61 16 17 C 0.33 9.48 7.43 132.85 0.99 10.47 16 18 C -0.17 -3.08 9.93 22.47 0.22 -2.85 16 19 C -0.06 -0.97 9.32 22.57 0.21 -0.76 16 20 C 0.02 0.44 5.66 38.23 0.22 0.65 16 21 N -0.48 -7.76 4.79 -693.75 -3.32 -11.08 16 22 C 0.01 0.11 4.34 86.31 0.37 0.49 16 23 C 0.07 0.85 7.01 72.01 0.50 1.35 16 24 O -0.40 -6.31 10.83 -148.98 -1.61 -7.92 16 25 C 0.06 0.64 7.01 72.01 0.50 1.14 16 26 C 0.02 0.21 5.41 86.31 0.47 0.68 16 27 C 0.07 1.84 10.00 84.79 0.85 2.69 16 28 N -0.50 -17.08 7.88 -192.42 -1.52 -18.59 16 29 H 0.05 2.07 5.64 -2.39 -0.01 2.06 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.04 2.02 3.21 -2.39 -0.01 2.01 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.40 13.53 8.56 -92.71 -0.79 12.74 16 36 H 0.43 8.28 8.72 -92.71 -0.81 7.47 16 37 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.17 1.50 7.27 -2.91 -0.02 1.48 16 39 H 0.10 1.49 7.25 -2.39 -0.02 1.47 16 40 H 0.05 0.84 7.55 -2.39 -0.02 0.82 16 41 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.11 0.85 6.91 -2.39 -0.02 0.84 16 47 H 0.15 3.90 5.82 -2.91 -0.02 3.88 16 Total: -1.00 -77.79 364.65 -2.09 -79.89 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.66 Total: 26.59 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 7.15 Total: 17.82 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -8.60 Total: -136.56 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.66 Total: -35.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.26 kcal Total: -77.79 -2.09 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194933483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.581 kcal (2) G-P(sol) polarization free energy of solvation -77.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds