Wall clock time and date at job start Tue Mar 31 2020 19:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 H 1.08995 * 109.47413 * 305.00391 * 3 2 1 5 5 C 1.50704 * 109.47406 * 184.99835 * 3 2 1 6 6 O 1.21291 * 120.00259 * 240.00157 * 5 3 2 7 7 N 1.34779 * 119.99258 * 59.99814 * 5 3 2 8 8 C 1.40162 * 119.99437 * 180.02562 * 7 5 3 9 9 C 1.40415 * 125.97631 * 0.31570 * 8 7 5 10 10 C 1.35232 * 107.86655 * 180.13084 * 9 8 7 11 11 C 1.50703 * 126.06766 * 179.84998 * 10 9 8 12 12 N 1.34968 * 107.86163 * 359.58679 * 10 9 8 13 13 C 1.46509 * 125.97450 * 180.23081 * 12 10 9 14 14 C 1.50698 * 109.47025 * 89.99735 * 13 12 10 15 15 H 1.08000 * 120.00464 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99358 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00418 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46890 * 120.00230 * 18 16 14 21 21 H 1.48501 * 109.46779 * 239.99778 * 18 16 14 22 22 N 1.31221 * 125.97269 * 179.97438 * 8 7 5 23 23 N 1.46502 * 109.47468 * 65.00132 * 3 2 1 24 24 C 1.46762 * 124.35200 * 240.00051 * 23 3 2 25 25 C 1.54475 * 105.47717 * 197.01008 * 24 23 3 26 26 C 1.54630 * 101.76729 * 334.58813 * 25 24 23 27 27 C 1.34415 * 124.34714 * 59.69843 * 23 3 2 28 28 O 1.21281 * 124.94655 * 359.57013 * 27 23 3 29 29 H 1.08999 * 109.47372 * 59.99606 * 1 2 3 30 30 H 1.09000 * 109.47034 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47004 * 299.99777 * 1 2 3 32 32 H 1.08994 * 109.47376 * 240.00059 * 2 1 3 33 33 H 1.09000 * 109.47264 * 119.99436 * 2 1 3 34 34 H 0.96991 * 120.00480 * 0.02562 * 7 5 3 35 35 H 1.07995 * 126.06342 * 0.02562 * 9 8 7 36 36 H 1.09002 * 109.47152 * 269.68932 * 11 10 9 37 37 H 1.09001 * 109.46980 * 149.69032 * 11 10 9 38 38 H 1.09004 * 109.47113 * 29.69013 * 11 10 9 39 39 H 1.08994 * 109.46750 * 210.00045 * 13 12 10 40 40 H 1.09004 * 109.46474 * 329.99737 * 13 12 10 41 41 H 0.96998 * 120.00265 * 179.97438 * 17 16 14 42 42 H 1.08994 * 110.24831 * 316.01667 * 24 23 3 43 43 H 1.09005 * 110.24043 * 78.01336 * 24 23 3 44 44 H 1.09003 * 110.96608 * 92.69923 * 25 24 23 45 45 H 1.08991 * 110.97618 * 216.46489 * 25 24 23 46 46 H 1.08998 * 110.49407 * 143.47039 * 26 25 24 47 47 H 1.09004 * 110.48653 * 265.99036 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 8 4.2217 1.9437 0.7479 7 7 4.1297 0.8912 -1.2031 8 6 5.5266 0.8925 -1.3181 9 6 6.4304 1.4269 -0.3858 10 6 7.6811 1.2332 -0.8624 11 6 8.9622 1.6523 -0.1885 12 7 7.5784 0.5928 -2.0461 13 6 8.6943 0.1832 -2.9025 14 6 9.1334 -1.2079 -2.5244 15 1 8.6313 -1.7345 -1.7262 16 6 10.1755 -1.8088 -3.1981 17 7 10.7866 -1.1678 -4.1703 18 14 10.7194 -3.5335 -2.7298 19 1 9.8766 -4.0323 -1.6136 20 1 10.5723 -4.4340 -3.9013 21 1 12.1414 -3.5052 -2.3027 22 7 6.2186 0.3889 -2.3127 23 7 1.6524 2.0976 1.2518 24 6 0.8076 3.2949 1.3329 25 6 1.0290 3.8601 2.7534 26 6 1.4531 2.5945 3.5339 27 6 2.0202 1.6758 2.4739 28 8 2.7086 0.7020 2.6948 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.5861 0.4922 -1.9003 35 1 6.1725 1.9087 0.5457 36 1 9.2308 2.6580 -0.5120 37 1 9.7586 0.9589 -0.4587 38 1 8.8238 1.6432 0.8927 39 1 8.3749 0.1928 -3.9446 40 1 9.5262 0.8752 -2.7711 41 1 11.5200 -1.5904 -4.6440 42 1 1.1150 4.0249 0.5843 43 1 -0.2398 3.0276 1.1924 44 1 1.8244 4.6054 2.7570 45 1 0.1054 4.2756 3.1563 46 1 2.2129 2.8403 4.2757 47 1 0.5889 2.1339 4.0125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270999797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:40 Heat of formation + Delta-G solvation = 9.630835 kcal Electronic energy + Delta-G solvation = -29187.182808 eV Core-core repulsion = 25178.865360 eV Total energy + Delta-G solvation = -4008.317448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14112 -40.44600 -38.93996 -36.49130 -35.17125 -34.78966 -33.32708 -31.43608 -31.23431 -30.81600 -27.93335 -27.69780 -26.43641 -26.24866 -23.20841 -22.58462 -22.18745 -21.73386 -19.75750 -19.73420 -18.71344 -17.23679 -16.96523 -16.69997 -16.62921 -15.96747 -15.34938 -15.16264 -14.94401 -14.63502 -14.41555 -14.08163 -13.98535 -13.83660 -13.63098 -13.26717 -13.04495 -12.86673 -12.77936 -12.46790 -12.33916 -12.20175 -12.08241 -11.86037 -11.64484 -11.51085 -11.38961 -11.35710 -11.22709 -11.03794 -10.84081 -10.38867 -10.22937 -9.94169 -9.74671 -9.60906 -9.48627 -8.85976 -8.63531 -7.90267 -7.42028 -6.24329 -4.31773 2.32352 2.36324 2.69618 2.90544 3.01995 3.21687 3.29545 3.36709 3.72537 3.87186 4.12034 4.17705 4.31975 4.47685 4.53381 4.58819 4.65373 4.80305 4.95614 5.09314 5.10320 5.13751 5.20271 5.38043 5.40309 5.47879 5.53497 5.63132 5.67309 5.74633 5.79588 5.95238 5.97769 6.12136 6.22889 6.29985 6.50571 6.60355 6.76086 6.95337 6.95631 7.06756 7.47807 7.67132 7.69676 7.90532 8.08033 8.11779 8.30058 8.67955 8.77680 9.34760 10.82901 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.002585 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.884472 B =10829.418452 C =11219.125568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.151 3.849 4 H 0.116 0.884 5 C 0.507 3.493 6 O -0.495 6.495 7 N -0.630 5.630 8 C 0.265 3.735 9 C -0.288 4.288 10 C 0.091 3.909 11 C -0.088 4.088 12 N -0.317 5.317 13 C 0.259 3.741 14 C -0.535 4.535 15 H 0.065 0.935 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.280 1.280 22 N -0.321 5.321 23 N -0.607 5.607 24 C 0.105 3.895 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.525 3.475 28 O -0.511 6.511 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.267 0.733 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.005 10.948 10.204 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.134 0.866 5 C 0.290 3.710 6 O -0.366 6.366 7 N -0.278 5.278 8 C 0.012 3.988 9 C -0.319 4.319 10 C -0.040 4.040 11 C -0.147 4.147 12 N -0.100 5.100 13 C 0.141 3.859 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.206 1.206 22 N -0.152 5.152 23 N -0.342 5.342 24 C -0.018 4.018 25 C -0.168 4.168 26 C -0.194 4.194 27 C 0.313 3.687 28 O -0.385 6.385 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.244 0.756 35 H 0.175 0.825 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.120 0.880 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.950 10.113 9.589 26.000 hybrid contribution 0.132 -0.749 0.294 0.815 sum -21.819 9.364 9.883 25.718 Atomic orbital electron populations 1.21701 0.94454 1.02195 1.01797 1.21951 0.97172 0.93969 1.04801 1.20776 0.91090 0.95989 0.87780 0.86597 1.20807 0.90435 0.78445 0.81279 1.90661 1.64143 1.43044 1.38743 1.42405 1.03507 1.58681 1.23223 1.18969 0.83619 1.00703 0.95464 1.21227 0.89485 1.16587 1.04569 1.21050 0.96884 0.97427 0.88671 1.20374 0.93047 1.01595 0.99646 1.48980 1.03913 1.41042 1.16018 1.19686 0.79880 0.96416 0.89925 1.21379 1.16961 0.99556 1.19468 0.91680 1.24928 0.95757 0.98582 0.94527 1.69925 1.23084 1.37959 1.22045 0.86309 0.78456 0.83356 0.78643 1.19536 1.20653 1.20626 1.77237 0.88568 1.26823 1.22528 1.47904 1.51598 1.29654 1.05085 1.22100 0.94504 0.86558 0.98598 1.22574 1.03084 0.97256 0.93912 1.22305 1.03078 0.95936 0.98083 1.20759 0.78986 0.85042 0.83941 1.90749 1.36522 1.27817 1.83416 0.92492 0.92123 0.92639 0.90059 0.89369 0.75633 0.82532 0.91127 0.89897 0.90655 0.93016 0.92821 0.92323 0.90370 0.90927 0.89802 0.89230 0.88014 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.80 37.16 0.36 -0.64 16 2 C -0.14 -1.36 5.30 -26.73 -0.14 -1.50 16 3 C 0.15 1.56 2.67 -69.08 -0.18 1.37 16 4 H 0.12 0.80 8.07 -51.93 -0.42 0.38 16 5 C 0.51 7.77 6.83 -10.98 -0.07 7.70 16 6 O -0.49 -9.43 12.05 -8.60 -0.10 -9.54 16 7 N -0.63 -10.13 5.31 -11.13 -0.06 -10.19 16 8 C 0.26 5.61 8.11 -154.38 -1.25 4.36 16 9 C -0.29 -6.26 9.52 -39.83 -0.38 -6.64 16 10 C 0.09 2.01 6.92 -82.28 -0.57 1.44 16 11 C -0.09 -1.59 9.89 36.01 0.36 -1.23 16 12 N -0.32 -7.74 3.59 -58.32 -0.21 -7.95 16 13 C 0.26 6.76 5.81 -5.19 -0.03 6.73 16 14 C -0.54 -15.03 9.39 -34.44 -0.32 -15.35 16 15 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 18 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.32 -7.60 12.59 31.44 0.40 -7.20 16 23 N -0.61 -6.05 2.07 -166.16 -0.34 -6.39 16 24 C 0.11 0.61 7.30 -3.13 -0.02 0.58 16 25 C -0.13 -0.67 7.18 -25.10 -0.18 -0.85 16 26 C -0.15 -1.20 6.86 -26.73 -0.18 -1.38 16 27 C 0.53 6.60 6.68 -10.85 -0.07 6.52 16 28 O -0.51 -8.98 15.36 -8.59 -0.13 -9.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 32 H 0.08 0.71 7.43 -51.93 -0.39 0.32 16 33 H 0.09 1.15 6.60 -51.93 -0.34 0.81 16 34 H 0.41 5.19 8.18 -40.82 -0.33 4.85 16 35 H 0.16 3.40 5.92 -52.49 -0.31 3.09 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.05 1.39 7.65 -51.93 -0.40 0.99 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -36.88 387.83 -8.87 -45.76 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.19 Total: 4.12 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.79 Total: 2.81 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.52 Total: -56.34 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.24 Total: -18.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.88 -8.87 -45.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270999797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.386 kcal (2) G-P(sol) polarization free energy of solvation -36.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds