Wall clock time and date at job start Tue Mar 31 2020 19:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 H 1.09004 * 109.46976 * 305.00352 * 3 2 1 5 5 C 1.50701 * 109.47287 * 185.00069 * 3 2 1 6 6 H 1.08001 * 119.99968 * 240.00391 * 5 3 2 7 7 C 1.37878 * 119.99627 * 60.00253 * 5 3 2 8 8 N 1.31511 * 120.00154 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99603 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47128 * 119.99891 * 9 7 5 12 12 H 1.48510 * 109.46799 * 239.99832 * 9 7 5 13 13 N 1.46504 * 109.46787 * 65.00350 * 3 2 1 14 14 C 1.34777 * 119.99911 * 274.99998 * 13 3 2 15 15 O 1.21369 * 119.99823 * 359.97438 * 14 13 3 16 16 C 1.49342 * 120.00060 * 180.02562 * 14 13 3 17 17 O 1.21384 * 119.99668 * 0.02562 * 16 14 13 18 18 N 1.34781 * 119.99968 * 179.97438 * 16 14 13 19 19 C 1.39927 * 119.99788 * 179.97438 * 18 16 14 20 20 C 1.40462 * 125.98168 * 0.25306 * 19 18 16 21 21 C 1.35216 * 107.86822 * 180.15130 * 20 19 18 22 22 C 1.50697 * 126.06463 * 179.88470 * 21 20 19 23 23 C 1.53000 * 117.49504 * 326.06860 * 22 21 20 24 24 C 1.52997 * 60.00347 * 107.48912 * 23 22 21 25 25 N 1.34991 * 107.87337 * 359.62187 * 21 20 19 26 26 C 1.46503 * 125.97047 * 180.26567 * 25 21 20 27 27 C 1.53000 * 109.47062 * 89.99477 * 26 25 21 28 28 N 1.31271 * 125.98007 * 179.97438 * 19 18 16 29 29 H 1.08999 * 109.47238 * 59.99265 * 1 2 3 30 30 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46817 * 299.99614 * 1 2 3 32 32 H 1.09007 * 109.46746 * 240.00430 * 2 1 3 33 33 H 1.08999 * 109.47238 * 120.00735 * 2 1 3 34 34 H 0.97000 * 119.99611 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99810 * 95.00076 * 13 3 2 36 36 H 0.97002 * 119.99883 * 0.02562 * 18 16 14 37 37 H 1.07998 * 126.06704 * 0.02562 * 20 19 18 38 38 H 1.08990 * 115.56356 * 180.38031 * 22 21 20 39 39 H 1.09002 * 117.49696 * 214.98125 * 23 22 21 40 40 H 1.09002 * 117.50343 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 42 42 H 1.08999 * 117.52022 * 107.47599 * 24 23 22 43 43 H 1.09000 * 109.46912 * 209.99846 * 26 25 21 44 44 H 1.08998 * 109.47060 * 329.99773 * 26 25 21 45 45 H 1.09004 * 109.47342 * 60.00352 * 27 26 25 46 46 H 1.08997 * 109.46968 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47558 * 299.99973 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6093 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3397 2.6327 0.4336 16 6 0.0404 3.3324 2.6431 17 8 0.8160 3.3653 3.5762 18 7 -1.1767 3.8998 2.7581 19 6 -1.5469 4.5253 3.9538 20 6 -0.7516 4.6394 5.1060 21 6 -1.4677 5.3052 6.0400 22 6 -1.0058 5.6505 7.4323 23 6 -0.0783 4.6574 8.1354 24 6 0.4744 5.9885 7.6220 25 7 -2.6675 5.6109 5.5021 26 6 -3.7501 6.3373 6.1703 27 6 -3.5907 7.8375 5.9157 28 7 -2.6961 5.1127 4.1933 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8292 -0.0611 -2.9499 35 1 2.2721 2.1230 1.9978 36 1 -1.7964 3.8739 2.0122 37 1 0.2526 4.2606 5.2255 38 1 -1.7276 6.1874 8.0476 39 1 -0.1900 4.5411 9.2134 40 1 0.1982 3.7546 7.5909 41 1 1.1139 5.9612 6.7398 42 1 0.7262 6.7482 8.3620 43 1 -4.7097 6.0019 5.7768 44 1 -3.7096 6.1444 7.2423 45 1 -3.6313 8.0305 4.8437 46 1 -4.3965 8.3780 6.4125 47 1 -2.6312 8.1730 6.3092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275830896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:47 Heat of formation + Delta-G solvation = 35.635185 kcal Electronic energy + Delta-G solvation = -28644.609719 eV Core-core repulsion = 24637.419904 eV Total energy + Delta-G solvation = -4007.189814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66139 -40.18844 -38.26988 -37.31958 -35.65354 -35.12425 -33.67327 -32.40873 -30.99634 -30.03257 -29.14162 -27.30298 -25.17716 -24.14890 -23.34187 -22.73198 -22.64700 -21.05724 -20.28831 -19.70023 -19.37755 -18.06806 -17.56353 -16.51500 -16.29040 -15.89819 -15.56092 -15.28681 -15.12792 -15.00635 -14.63375 -14.41009 -14.14918 -13.95882 -13.54161 -13.31696 -12.88498 -12.75017 -12.48338 -12.11158 -12.04790 -11.83854 -11.70809 -11.61214 -11.47508 -11.33372 -11.20244 -11.01266 -10.91732 -10.83990 -10.56744 -10.55361 -10.34136 -10.26713 -9.69595 -9.13401 -9.06789 -8.66643 -8.57196 -8.31291 -8.03984 -6.17628 -4.27190 1.41055 1.86222 1.96227 2.83903 2.84397 3.22954 3.31258 3.34850 3.65947 3.75474 3.98087 4.20880 4.27775 4.33887 4.54813 4.62408 4.64199 4.71106 4.85600 5.06527 5.13117 5.15062 5.20098 5.36457 5.36598 5.50210 5.58629 5.69389 5.70899 5.86179 5.86479 6.10400 6.32300 6.37359 6.55985 6.72586 6.90826 6.93682 6.96192 7.09104 7.14833 7.27553 7.46911 7.62390 7.74007 7.80196 7.91924 8.08092 8.42947 8.61388 8.85525 9.39651 10.87828 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.002477 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.732430 B =11299.587409 C =12202.317712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.499 3.501 15 O -0.526 6.526 16 C 0.517 3.483 17 O -0.500 6.500 18 N -0.614 5.614 19 C 0.304 3.696 20 C -0.265 4.265 21 C 0.126 3.874 22 C -0.108 4.108 23 C -0.159 4.159 24 C -0.159 4.159 25 N -0.363 5.363 26 C 0.133 3.867 27 C -0.171 4.171 28 N -0.319 5.319 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.427 0.573 37 H 0.172 0.828 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.272 11.177 19.780 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.315 5.315 14 C 0.277 3.723 15 O -0.404 6.404 16 C 0.298 3.702 17 O -0.371 6.371 18 N -0.265 5.265 19 C 0.049 3.951 20 C -0.295 4.295 21 C -0.001 4.001 22 C -0.127 4.127 23 C -0.197 4.197 24 C -0.196 4.196 25 N -0.147 5.147 26 C 0.012 3.988 27 C -0.229 4.229 28 N -0.148 5.148 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.265 0.735 37 H 0.190 0.810 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.415 11.386 19.101 25.468 hybrid contribution 1.493 -0.177 0.126 1.509 sum -10.922 11.209 19.227 24.791 Atomic orbital electron populations 1.21860 0.98280 0.98470 1.01072 1.21969 0.92666 0.99358 1.02808 1.19045 0.94834 0.89412 0.80044 0.92660 1.21240 0.90271 1.39332 1.06562 0.91672 1.24874 0.98826 0.94614 0.95257 1.69892 1.35180 1.37476 1.09341 0.86358 0.84550 0.77827 0.78201 1.19607 1.20813 1.20847 1.46446 1.13247 1.52477 1.19281 1.19426 0.84623 0.81541 0.86713 1.90763 1.51127 1.59310 1.39249 1.20980 0.80820 0.78608 0.89752 1.90646 1.50457 1.56181 1.39851 1.42366 1.17193 1.53462 1.13440 1.19039 0.92672 0.95616 0.87792 1.21501 1.03980 1.12148 0.91829 1.20140 0.86570 0.98682 0.94745 1.20400 0.94578 1.06159 0.91609 1.23098 1.01620 0.94546 1.00413 1.23094 0.93643 0.99029 1.03856 1.48102 1.12275 1.45126 1.09207 1.21617 0.89043 0.91554 0.96611 1.22210 1.02823 0.94406 1.03495 1.77403 1.19520 1.21831 0.96079 0.92904 0.95446 0.94604 0.87819 0.94614 0.92491 0.76327 0.73491 0.81043 0.86776 0.88063 0.87678 0.87694 0.88071 0.88704 0.89029 0.91492 0.90594 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.67 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.07 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.67 -13.89 5.01 -55.39 -0.28 -14.17 16 14 C 0.50 9.83 6.45 -11.64 -0.08 9.76 16 15 O -0.53 -11.27 13.61 5.48 0.07 -11.20 16 16 C 0.52 9.00 7.85 -11.63 -0.09 8.91 16 17 O -0.50 -8.99 13.60 5.47 0.07 -8.91 16 18 N -0.61 -9.67 5.43 -11.58 -0.06 -9.73 16 19 C 0.30 4.75 8.10 -154.56 -1.25 3.50 16 20 C -0.26 -3.85 8.59 -39.82 -0.34 -4.19 16 21 C 0.13 1.49 6.61 -82.28 -0.54 0.94 16 22 C -0.11 -0.89 5.97 -91.77 -0.55 -1.43 16 23 C -0.16 -1.21 10.04 -26.73 -0.27 -1.48 16 24 C -0.16 -1.21 10.05 -26.73 -0.27 -1.47 16 25 N -0.36 -4.27 3.61 -57.16 -0.21 -4.48 16 26 C 0.13 0.98 6.90 -4.04 -0.03 0.95 16 27 C -0.17 -1.09 10.24 37.16 0.38 -0.70 16 28 N -0.32 -4.71 12.59 31.41 0.40 -4.31 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.40 7.82 8.01 -40.82 -0.33 7.50 16 36 H 0.43 6.25 8.29 -40.82 -0.34 5.91 16 37 H 0.17 2.63 5.91 -52.49 -0.31 2.32 16 38 H 0.11 0.68 7.23 -51.93 -0.38 0.31 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.95 7.93 -51.93 -0.41 0.54 16 41 H 0.10 0.95 7.95 -51.93 -0.41 0.54 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.45 7.21 -51.93 -0.37 0.08 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 387.78 15.07 5.84 5.84 Total: -1.00 -30.22 387.78 -8.85 -39.06 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -6.88 Total: 13.16 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -3.42 Total: 2.82 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.47 Total: -56.09 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.15 Total: -20.11 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.22 -8.85 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275830896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.699 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds