Wall clock time and date at job start Tue Mar 31 2020 19:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 H 1.09004 * 109.46976 * 305.00352 * 3 2 1 5 5 C 1.50701 * 109.47287 * 185.00069 * 3 2 1 6 6 H 1.08001 * 119.99968 * 240.00391 * 5 3 2 7 7 C 1.37878 * 119.99627 * 60.00253 * 5 3 2 8 8 N 1.31511 * 120.00154 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99603 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47128 * 119.99891 * 9 7 5 12 12 H 1.48510 * 109.46799 * 239.99832 * 9 7 5 13 13 N 1.46504 * 109.46787 * 65.00350 * 3 2 1 14 14 C 1.34777 * 119.99911 * 274.99998 * 13 3 2 15 15 O 1.21369 * 119.99823 * 359.97438 * 14 13 3 16 16 C 1.49342 * 120.00060 * 180.02562 * 14 13 3 17 17 O 1.21384 * 119.99668 * 0.02562 * 16 14 13 18 18 N 1.34781 * 119.99968 * 179.97438 * 16 14 13 19 19 C 1.39927 * 119.99788 * 179.97438 * 18 16 14 20 20 C 1.40462 * 125.98168 * 0.25306 * 19 18 16 21 21 C 1.35216 * 107.86822 * 180.15130 * 20 19 18 22 22 C 1.50697 * 126.06463 * 179.88470 * 21 20 19 23 23 C 1.53000 * 117.49504 * 326.06860 * 22 21 20 24 24 C 1.52997 * 60.00347 * 107.48912 * 23 22 21 25 25 N 1.34991 * 107.87337 * 359.62187 * 21 20 19 26 26 C 1.46503 * 125.97047 * 180.26567 * 25 21 20 27 27 C 1.53000 * 109.47062 * 89.99477 * 26 25 21 28 28 N 1.31271 * 125.98007 * 179.97438 * 19 18 16 29 29 H 1.08999 * 109.47238 * 59.99265 * 1 2 3 30 30 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46817 * 299.99614 * 1 2 3 32 32 H 1.09007 * 109.46746 * 240.00430 * 2 1 3 33 33 H 1.08999 * 109.47238 * 120.00735 * 2 1 3 34 34 H 0.97000 * 119.99611 * 179.97438 * 8 7 5 35 35 H 0.96997 * 119.99810 * 95.00076 * 13 3 2 36 36 H 0.97002 * 119.99883 * 0.02562 * 18 16 14 37 37 H 1.07998 * 126.06704 * 0.02562 * 20 19 18 38 38 H 1.08990 * 115.56356 * 180.38031 * 22 21 20 39 39 H 1.09002 * 117.49696 * 214.98125 * 23 22 21 40 40 H 1.09002 * 117.50343 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 42 42 H 1.08999 * 117.52022 * 107.47599 * 24 23 22 43 43 H 1.09000 * 109.46912 * 209.99846 * 26 25 21 44 44 H 1.08998 * 109.47060 * 329.99773 * 26 25 21 45 45 H 1.09004 * 109.47342 * 60.00352 * 27 26 25 46 46 H 1.08997 * 109.46968 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47558 * 299.99973 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3812 10 1 6.5988 1.5451 -0.1937 11 1 6.4962 -0.5191 -1.4628 12 1 6.4000 1.6157 -2.6093 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3397 2.6327 0.4336 16 6 0.0404 3.3324 2.6431 17 8 0.8160 3.3653 3.5762 18 7 -1.1767 3.8998 2.7581 19 6 -1.5469 4.5253 3.9538 20 6 -0.7516 4.6394 5.1060 21 6 -1.4677 5.3052 6.0400 22 6 -1.0058 5.6505 7.4323 23 6 -0.0783 4.6574 8.1354 24 6 0.4744 5.9885 7.6220 25 7 -2.6675 5.6109 5.5021 26 6 -3.7501 6.3373 6.1703 27 6 -3.5907 7.8375 5.9157 28 7 -2.6961 5.1127 4.1933 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8292 -0.0611 -2.9499 35 1 2.2721 2.1230 1.9978 36 1 -1.7964 3.8739 2.0122 37 1 0.2526 4.2606 5.2255 38 1 -1.7276 6.1874 8.0476 39 1 -0.1900 4.5411 9.2134 40 1 0.1982 3.7546 7.5909 41 1 1.1139 5.9612 6.7398 42 1 0.7262 6.7482 8.3620 43 1 -4.7097 6.0019 5.7768 44 1 -3.7096 6.1444 7.2423 45 1 -3.6313 8.0305 4.8437 46 1 -4.3965 8.3780 6.4125 47 1 -2.6312 8.1730 6.3092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275830896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:47 Heat of formation + Delta-G solvation = 16.857808 kcal Electronic energy + Delta-G solvation = -28645.423967 eV Core-core repulsion = 24637.419904 eV Total energy + Delta-G solvation = -4008.004063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.72948 -41.63459 -39.81756 -38.02500 -37.25124 -36.43626 -34.67611 -34.25917 -32.83363 -31.01509 -30.06133 -29.17338 -26.63988 -24.98690 -24.91658 -23.81526 -23.22372 -22.41563 -21.53238 -21.32242 -20.73544 -19.45872 -18.53916 -18.08397 -17.73561 -17.31163 -16.98217 -16.82848 -16.29577 -16.01100 -15.84409 -15.52132 -15.23993 -15.11101 -14.92810 -14.62165 -14.42252 -13.94418 -13.63253 -13.48766 -13.20652 -13.05045 -12.96730 -12.82920 -12.71657 -12.59633 -12.47403 -12.33063 -12.22691 -12.13170 -12.09137 -11.79867 -11.59580 -11.47106 -11.32160 -11.09274 -10.67304 -10.54655 -9.86541 -9.66970 -9.37584 -8.18114 -6.34922 0.06690 0.77983 0.83444 1.44967 1.46964 1.58219 1.62169 1.70111 2.24515 2.39964 2.67139 3.04009 3.11995 3.36990 3.51278 3.57698 3.94388 4.00112 4.06416 4.12988 4.27107 4.38110 4.48775 4.49308 4.54972 4.57919 4.71152 4.79334 4.83187 4.86394 4.88279 5.02320 5.03635 5.16922 5.22086 5.23728 5.29129 5.34604 5.38776 5.56779 5.56902 5.66894 5.77611 5.86348 6.05716 6.11369 6.41392 6.66800 6.68362 6.74743 7.08129 7.36782 8.87402 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.002477 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.732430 B =11299.587409 C =12202.317712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.502 3.498 15 O -0.544 6.544 16 C 0.526 3.474 17 O -0.506 6.506 18 N -0.605 5.605 19 C 0.280 3.720 20 C -0.294 4.294 21 C 0.140 3.860 22 C -0.112 4.112 23 C -0.156 4.156 24 C -0.156 4.156 25 N -0.354 5.354 26 C 0.120 3.880 27 C -0.165 4.165 28 N -0.339 5.339 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.267 0.733 35 H 0.410 0.590 36 H 0.430 0.570 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.042 0.958 46 H 0.106 0.894 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 12.349 22.866 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.281 3.719 15 O -0.423 6.423 16 C 0.307 3.693 17 O -0.378 6.378 18 N -0.255 5.255 19 C 0.026 3.974 20 C -0.325 4.325 21 C 0.011 3.989 22 C -0.131 4.131 23 C -0.193 4.193 24 C -0.194 4.194 25 N -0.139 5.139 26 C 0.001 3.999 27 C -0.223 4.223 28 N -0.169 5.169 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.269 0.731 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.144 0.856 45 H 0.061 0.939 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.901 12.582 22.208 28.600 hybrid contribution 1.514 -0.451 -0.758 1.752 sum -11.387 12.131 21.450 27.146 Atomic orbital electron populations 1.21718 0.96677 0.99705 1.00382 1.21826 0.94035 0.98532 1.01824 1.18684 0.94215 0.89588 0.80180 0.96630 1.21540 0.91086 1.39400 1.06901 0.91229 1.25688 1.03192 0.94197 0.94903 1.70019 1.36952 1.38050 1.09804 0.85339 0.79214 0.77895 0.78158 1.18811 1.20305 1.20840 1.46203 1.14029 1.52861 1.18492 1.19724 0.83890 0.80881 0.87360 1.90750 1.51545 1.59765 1.40253 1.20288 0.81474 0.78961 0.88548 1.90657 1.50843 1.56704 1.39639 1.42158 1.16457 1.52860 1.13998 1.19179 0.93572 0.96835 0.87816 1.21472 1.04026 1.14324 0.92638 1.20588 0.85958 0.96599 0.95765 1.20645 0.95598 1.07068 0.89830 1.23149 1.00938 0.93637 1.01595 1.23141 0.92676 0.99886 1.03675 1.48551 1.13142 1.44049 1.08112 1.22133 0.87933 0.91699 0.98166 1.22174 1.04015 0.93850 1.02242 1.77315 1.19289 1.22148 0.98140 0.94562 0.93193 0.94221 0.90206 0.93984 0.92385 0.75429 0.73127 0.82441 0.83455 0.85325 0.89801 0.89898 0.85380 0.88178 0.85558 0.93878 0.87584 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.52 71.98 0.61 -4.90 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.87 2.24 44.24 0.10 13.97 16 4 H 0.02 0.92 7.58 -2.38 -0.02 0.90 16 5 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -50.68 11.29 21.45 0.24 -50.44 16 9 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -28.51 5.01 -447.52 -2.24 -30.76 16 14 C 0.50 20.34 6.45 87.24 0.56 20.90 16 15 O -0.54 -24.05 13.61 -3.31 -0.05 -24.10 16 16 C 0.53 18.81 7.85 87.23 0.69 19.49 16 17 O -0.51 -18.63 13.60 -3.35 -0.05 -18.68 16 18 N -0.60 -19.58 5.43 -308.89 -1.68 -21.26 16 19 C 0.28 8.89 8.10 133.40 1.08 9.97 16 20 C -0.29 -8.65 8.59 22.11 0.19 -8.46 16 21 C 0.14 3.12 6.61 41.38 0.27 3.39 16 22 C -0.11 -1.52 5.97 -11.54 -0.07 -1.59 16 23 C -0.16 -2.00 10.04 30.59 0.31 -1.69 16 24 C -0.16 -2.03 10.05 30.60 0.31 -1.72 16 25 N -0.35 -7.79 3.61 -334.74 -1.21 -9.00 16 26 C 0.12 1.41 6.90 86.38 0.60 2.00 16 27 C -0.16 -1.64 10.24 71.98 0.74 -0.91 16 28 N -0.34 -9.94 12.59 -54.54 -0.69 -10.63 16 29 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.65 5.65 -2.39 -0.01 1.64 16 32 H 0.08 4.26 5.95 -2.38 -0.01 4.25 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.41 16.23 8.01 -92.71 -0.74 15.48 16 36 H 0.43 13.03 8.29 -92.71 -0.77 12.26 16 37 H 0.16 5.01 5.91 -2.91 -0.02 5.00 16 38 H 0.15 1.03 7.23 -2.39 -0.02 1.01 16 39 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.46 7.93 -2.39 -0.02 1.44 16 41 H 0.08 1.47 7.95 -2.39 -0.02 1.45 16 42 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.13 0.65 7.21 -2.39 -0.02 0.64 16 45 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -67.35 387.78 2.09 -65.26 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.49 Total: 38.23 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.22 Total: 17.52 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.58 Total: -122.09 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.09 Total: -42.77 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.35 2.09 -65.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275830896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.116 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds