Wall clock time and date at job start Tue Mar 31 2020 18:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99664 * 2 1 4 4 C 1.50693 * 119.99953 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.82827 * 354.43605 * 4 2 1 6 6 O 1.43240 * 109.82926 * 233.55110 * 4 2 1 7 7 C 1.43645 * 109.97179 * 242.20011 * 6 4 2 8 8 C 1.54945 * 105.13541 * 335.57081 * 7 6 4 9 9 C 1.54381 * 109.83046 * 115.42253 * 4 2 1 10 10 H 1.08994 * 110.84766 * 22.46866 * 9 4 2 11 11 C 1.52999 * 110.84435 * 259.05930 * 9 4 2 12 12 N 1.46501 * 109.47314 * 174.99880 * 11 9 4 13 13 C 1.34781 * 120.00218 * 179.97438 * 12 11 9 14 14 O 1.21596 * 119.99748 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99756 * 179.97438 * 13 12 11 16 16 C 1.40201 * 119.99363 * 179.97438 * 15 13 12 17 17 C 1.40396 * 125.97516 * 359.71676 * 16 15 13 18 18 C 1.35248 * 107.86457 * 179.82807 * 17 16 15 19 19 N 1.34964 * 107.86118 * 0.43047 * 18 17 16 20 20 C 1.46500 * 125.97921 * 179.71102 * 19 18 17 21 21 C 1.50698 * 109.47135 * 124.99691 * 20 19 18 22 22 H 1.07997 * 120.00227 * 359.97438 * 21 20 19 23 23 C 1.37884 * 119.99339 * 180.02562 * 21 20 19 24 24 N 1.31508 * 120.00273 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99408 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47398 * 89.99927 * 25 23 21 27 27 H 1.48508 * 109.46820 * 210.00017 * 25 23 21 28 28 H 1.48497 * 109.47241 * 329.99587 * 25 23 21 29 29 N 1.31207 * 125.96575 * 180.02562 * 16 15 13 30 30 H 1.08002 * 120.00024 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00183 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46642 * 239.99185 * 3 2 1 33 33 H 1.08999 * 109.47000 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.46989 * 119.99317 * 3 2 1 35 35 H 1.09004 * 110.31107 * 94.48835 * 7 6 4 36 36 H 1.09001 * 110.31215 * 216.65663 * 7 6 4 37 37 H 1.09002 * 111.12670 * 154.36193 * 8 7 6 38 38 H 1.08995 * 111.12824 * 278.52527 * 8 7 6 39 39 H 1.09002 * 109.47404 * 294.99869 * 11 9 4 40 40 H 1.08999 * 109.47577 * 54.99875 * 11 9 4 41 41 H 0.96997 * 119.99617 * 359.97438 * 12 11 9 42 42 H 0.96997 * 120.00079 * 359.97438 * 15 13 12 43 43 H 1.07995 * 126.06850 * 0.02562 * 17 16 15 44 44 H 1.08006 * 126.06910 * 180.15560 * 18 17 16 45 45 H 1.09001 * 109.46489 * 244.99697 * 20 19 18 46 46 H 1.08995 * 109.46744 * 4.99521 * 20 19 18 47 47 H 0.97001 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3645 -2.1354 0.1004 6 8 2.9997 -1.3251 1.0845 7 6 4.3386 -1.4285 0.5745 8 6 4.1908 -2.0898 -0.8189 9 6 2.8652 -1.4475 -1.3110 10 1 3.0472 -0.4722 -1.7623 11 6 2.1433 -2.3727 -2.2926 12 7 2.8662 -2.3925 -3.5668 13 6 2.4112 -3.1451 -4.5881 14 8 1.4005 -3.8074 -4.4522 15 7 3.0760 -3.1628 -5.7604 16 6 2.6029 -3.9462 -6.8226 17 6 1.4594 -4.7605 -6.8014 18 6 1.3437 -5.3449 -8.0156 19 7 2.3775 -4.9274 -8.7762 20 6 2.6408 -5.3221 -10.1622 21 6 2.7567 -4.0900 -11.0221 22 1 2.6449 -3.1108 -10.5804 23 6 3.0044 -4.2130 -12.3729 24 7 3.1400 -5.4054 -12.9107 25 14 3.1487 -2.6857 -13.4387 26 1 4.5641 -2.2375 -13.4725 27 1 2.6958 -2.9998 -14.8177 28 1 2.3009 -1.6055 -12.8732 29 7 3.1548 -4.0507 -8.0083 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.6902 1.3628 -0.8899 33 1 1.3551 2.1336 -0.0005 34 1 2.6900 1.3630 0.8901 35 1 4.7842 -0.4384 0.4780 36 1 4.9452 -2.0551 1.2282 37 1 5.0225 -1.8226 -1.4709 38 1 4.0944 -3.1720 -0.7319 39 1 2.1056 -3.3812 -1.8807 40 1 1.1290 -2.0088 -2.4561 41 1 3.6722 -1.8639 -3.6753 42 1 3.8816 -2.6337 -5.8691 43 1 0.7892 -4.8938 -5.9651 44 1 0.5650 -6.0283 -8.3207 45 1 3.5723 -5.8864 -10.2084 46 1 1.8216 -5.9428 -10.5250 47 1 3.3139 -5.4919 -13.8611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280984395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:24 Heat of formation + Delta-G solvation = 25.058217 kcal Electronic energy + Delta-G solvation = -27767.588729 eV Core-core repulsion = 23759.940263 eV Total energy + Delta-G solvation = -4007.648466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81854 -40.39738 -39.42787 -35.68568 -35.40577 -34.63727 -33.37608 -32.36787 -30.83201 -29.63352 -29.26262 -27.67848 -26.79752 -25.77388 -23.10187 -23.06730 -21.80568 -21.31543 -20.41306 -19.80684 -19.07013 -18.00928 -17.25714 -16.67584 -16.57528 -16.34185 -15.74979 -15.57575 -15.40157 -14.77435 -14.65440 -14.37238 -14.26811 -14.01491 -13.86379 -13.70178 -13.44070 -12.94206 -12.78925 -12.47778 -12.30950 -12.21233 -12.08847 -11.95496 -11.77766 -11.58812 -11.49091 -11.21553 -11.04111 -10.89597 -10.42814 -10.25865 -10.10644 -10.01613 -9.70426 -9.49863 -9.47063 -9.28604 -8.63200 -8.09880 -7.41243 -6.24094 -4.29032 1.74266 2.33921 2.66240 3.10878 3.23469 3.29212 3.34203 3.50316 3.55894 3.83564 3.91708 4.08482 4.20587 4.31631 4.40760 4.54256 4.62106 4.70752 4.77693 4.83569 5.10962 5.15414 5.22265 5.26576 5.34458 5.35252 5.41714 5.45010 5.51819 5.56351 5.59510 5.73485 5.81224 6.16225 6.18831 6.27048 6.39864 6.53657 6.55224 6.58127 6.87287 7.00440 7.10395 7.49520 7.69792 7.82126 7.96747 8.07285 8.56685 8.66651 8.81192 9.36438 10.84559 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.001875 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.376900 B =14925.823657 C =15221.124765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C -0.116 4.116 4 C 0.126 3.874 5 H 0.091 0.909 6 O -0.370 6.370 7 C 0.049 3.951 8 C -0.153 4.153 9 C -0.128 4.128 10 H 0.097 0.903 11 C 0.153 3.847 12 N -0.744 5.744 13 C 0.713 3.287 14 O -0.566 6.566 15 N -0.643 5.643 16 C 0.275 3.725 17 C -0.286 4.286 18 C 0.051 3.949 19 N -0.320 5.320 20 C 0.258 3.742 21 C -0.528 4.528 22 H 0.069 0.931 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.908 3.092 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.273 1.273 29 N -0.308 5.308 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.396 0.604 42 H 0.406 0.594 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 9.453 26.941 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.173 4.173 4 C 0.068 3.932 5 H 0.108 0.892 6 O -0.289 6.289 7 C -0.027 4.027 8 C -0.191 4.191 9 C -0.147 4.147 10 H 0.115 0.885 11 C 0.028 3.972 12 N -0.401 5.401 13 C 0.412 3.588 14 O -0.442 6.442 15 N -0.293 5.293 16 C 0.021 3.979 17 C -0.318 4.318 18 C -0.099 4.099 19 N -0.102 5.102 20 C 0.141 3.859 21 C -0.566 4.566 22 H 0.087 0.913 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.735 3.265 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 N -0.139 5.139 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.230 0.770 42 H 0.241 0.759 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.542 9.082 26.245 27.777 hybrid contribution 0.328 1.046 -0.613 1.256 sum 0.870 10.128 25.632 27.574 Atomic orbital electron populations 1.23797 0.94959 1.02399 1.00218 1.21938 0.95474 0.95684 1.00989 1.20799 1.00328 0.93974 1.02151 1.21635 0.91073 0.95103 0.85352 0.89156 1.88495 1.15209 1.94987 1.30203 1.23400 0.84835 1.00010 0.94480 1.23406 0.97252 1.01579 0.96823 1.23019 0.95470 1.00469 0.95784 0.88524 1.21086 0.95334 0.99461 0.81282 1.44946 1.31366 1.51057 1.12691 1.15597 0.83047 0.80564 0.79549 1.90877 1.25399 1.46057 1.81825 1.41364 1.29758 1.48220 1.09968 1.18777 0.95403 0.95861 0.87844 1.21507 1.02974 1.07516 0.99778 1.22560 0.94313 1.01287 0.91734 1.49054 1.17314 1.31448 1.12415 1.19734 0.98594 0.96946 0.70626 1.21258 1.50104 0.92722 0.92513 0.91326 1.24951 0.94710 0.96757 0.97726 1.69916 1.48362 1.22135 1.12944 0.86326 0.78573 0.82442 0.79136 1.20361 1.20989 1.19743 1.77318 1.19859 1.15291 1.01434 0.87966 0.88104 0.91829 0.91947 0.91255 0.92116 0.89476 0.89533 0.89643 0.90933 0.90921 0.77002 0.75918 0.82205 0.81524 0.93759 0.92529 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 13.93 29.01 0.40 -0.81 16 2 C -0.14 -1.01 5.07 -101.07 -0.51 -1.52 16 3 C -0.12 -0.71 9.79 36.01 0.35 -0.36 16 4 C 0.13 0.91 3.35 -27.16 -0.09 0.82 16 5 H 0.09 0.66 7.49 -51.93 -0.39 0.27 16 6 O -0.37 -3.10 10.84 -35.23 -0.38 -3.48 16 7 C 0.05 0.28 7.78 38.18 0.30 0.58 16 8 C -0.15 -0.78 6.55 -24.48 -0.16 -0.95 16 9 C -0.13 -0.77 2.47 -88.68 -0.22 -0.99 16 10 H 0.10 0.53 6.70 -51.93 -0.35 0.18 16 11 C 0.15 1.25 4.98 -4.04 -0.02 1.23 16 12 N -0.74 -6.86 5.49 -65.22 -0.36 -7.21 16 13 C 0.71 10.18 8.53 -86.92 -0.74 9.44 16 14 O -0.57 -10.09 13.47 5.28 0.07 -10.02 16 15 N -0.64 -9.81 5.46 -15.51 -0.08 -9.89 16 16 C 0.28 5.53 8.11 -154.36 -1.25 4.28 16 17 C -0.29 -5.74 9.61 -39.84 -0.38 -6.12 16 18 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 19 N -0.32 -7.48 3.67 -62.56 -0.23 -7.70 16 20 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 21 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 22 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 24 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 25 Si 0.91 21.34 29.54 -169.99 -5.02 16.31 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 29 N -0.31 -7.08 12.42 31.44 0.39 -6.69 16 30 H 0.10 0.61 7.83 -52.49 -0.41 0.20 16 31 H 0.10 0.64 7.85 -52.49 -0.41 0.23 16 32 H 0.06 0.35 7.08 -51.93 -0.37 -0.02 16 33 H 0.06 0.35 7.78 -51.93 -0.40 -0.06 16 34 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.49 7.93 -51.93 -0.41 0.08 16 39 H 0.07 0.65 7.99 -51.93 -0.41 0.23 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 2.50 8.49 -40.82 -0.35 2.15 16 42 H 0.41 4.93 8.84 -40.82 -0.36 4.56 16 43 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 44 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 45 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.78 393.02 -9.02 -42.80 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.10 Total: 4.97 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.97 Total: -0.44 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.45 Total: -56.07 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.31 Total: -13.50 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.78 -9.02 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280984395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.860 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds