Wall clock time and date at job start Tue Mar 31 2020 18:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99664 * 2 1 4 4 C 1.50693 * 119.99953 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.82827 * 354.43605 * 4 2 1 6 6 O 1.43240 * 109.82926 * 233.55110 * 4 2 1 7 7 C 1.43645 * 109.97179 * 242.20011 * 6 4 2 8 8 C 1.54945 * 105.13541 * 335.57081 * 7 6 4 9 9 C 1.54381 * 109.83046 * 115.42253 * 4 2 1 10 10 H 1.08994 * 110.84766 * 22.46866 * 9 4 2 11 11 C 1.52999 * 110.84435 * 259.05930 * 9 4 2 12 12 N 1.46501 * 109.47314 * 174.99880 * 11 9 4 13 13 C 1.34781 * 120.00218 * 179.97438 * 12 11 9 14 14 O 1.21596 * 119.99748 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99756 * 179.97438 * 13 12 11 16 16 C 1.40201 * 119.99363 * 179.97438 * 15 13 12 17 17 C 1.40396 * 125.97516 * 359.71676 * 16 15 13 18 18 C 1.35248 * 107.86457 * 179.82807 * 17 16 15 19 19 N 1.34964 * 107.86118 * 0.43047 * 18 17 16 20 20 C 1.46500 * 125.97921 * 179.71102 * 19 18 17 21 21 C 1.50698 * 109.47135 * 124.99691 * 20 19 18 22 22 H 1.07997 * 120.00227 * 359.97438 * 21 20 19 23 23 C 1.37884 * 119.99339 * 180.02562 * 21 20 19 24 24 N 1.31508 * 120.00273 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99408 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47398 * 89.99927 * 25 23 21 27 27 H 1.48508 * 109.46820 * 210.00017 * 25 23 21 28 28 H 1.48497 * 109.47241 * 329.99587 * 25 23 21 29 29 N 1.31207 * 125.96575 * 180.02562 * 16 15 13 30 30 H 1.08002 * 120.00024 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00183 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46642 * 239.99185 * 3 2 1 33 33 H 1.08999 * 109.47000 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.46989 * 119.99317 * 3 2 1 35 35 H 1.09004 * 110.31107 * 94.48835 * 7 6 4 36 36 H 1.09001 * 110.31215 * 216.65663 * 7 6 4 37 37 H 1.09002 * 111.12670 * 154.36193 * 8 7 6 38 38 H 1.08995 * 111.12824 * 278.52527 * 8 7 6 39 39 H 1.09002 * 109.47404 * 294.99869 * 11 9 4 40 40 H 1.08999 * 109.47577 * 54.99875 * 11 9 4 41 41 H 0.96997 * 119.99617 * 359.97438 * 12 11 9 42 42 H 0.96997 * 120.00079 * 359.97438 * 15 13 12 43 43 H 1.07995 * 126.06850 * 0.02562 * 17 16 15 44 44 H 1.08006 * 126.06910 * 180.15560 * 18 17 16 45 45 H 1.09001 * 109.46489 * 244.99697 * 20 19 18 46 46 H 1.08995 * 109.46744 * 4.99521 * 20 19 18 47 47 H 0.97001 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3645 -2.1354 0.1004 6 8 2.9997 -1.3251 1.0845 7 6 4.3386 -1.4285 0.5745 8 6 4.1908 -2.0898 -0.8189 9 6 2.8652 -1.4475 -1.3110 10 1 3.0472 -0.4722 -1.7623 11 6 2.1433 -2.3727 -2.2926 12 7 2.8662 -2.3925 -3.5668 13 6 2.4112 -3.1451 -4.5881 14 8 1.4005 -3.8074 -4.4522 15 7 3.0760 -3.1628 -5.7604 16 6 2.6029 -3.9462 -6.8226 17 6 1.4594 -4.7605 -6.8014 18 6 1.3437 -5.3449 -8.0156 19 7 2.3775 -4.9274 -8.7762 20 6 2.6408 -5.3221 -10.1622 21 6 2.7567 -4.0900 -11.0221 22 1 2.6449 -3.1108 -10.5804 23 6 3.0044 -4.2130 -12.3729 24 7 3.1400 -5.4054 -12.9107 25 14 3.1487 -2.6857 -13.4387 26 1 4.5641 -2.2375 -13.4725 27 1 2.6958 -2.9998 -14.8177 28 1 2.3009 -1.6055 -12.8732 29 7 3.1548 -4.0507 -8.0083 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.6902 1.3628 -0.8899 33 1 1.3551 2.1336 -0.0005 34 1 2.6900 1.3630 0.8901 35 1 4.7842 -0.4384 0.4780 36 1 4.9452 -2.0551 1.2282 37 1 5.0225 -1.8226 -1.4709 38 1 4.0944 -3.1720 -0.7319 39 1 2.1056 -3.3812 -1.8807 40 1 1.1290 -2.0088 -2.4561 41 1 3.6722 -1.8639 -3.6753 42 1 3.8816 -2.6337 -5.8691 43 1 0.7892 -4.8938 -5.9651 44 1 0.5650 -6.0283 -8.3207 45 1 3.5723 -5.8864 -10.2084 46 1 1.8216 -5.9428 -10.5250 47 1 3.3139 -5.4919 -13.8611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280984395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:22 Heat of formation + Delta-G solvation = 2.842375 kcal Electronic energy + Delta-G solvation = -27768.552080 eV Core-core repulsion = 23759.940263 eV Total energy + Delta-G solvation = -4008.611817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.21687 -41.21432 -40.54221 -36.63279 -36.03851 -35.91989 -35.26083 -33.29423 -32.40572 -30.92550 -30.16759 -28.58202 -28.14806 -26.68575 -24.91443 -23.54531 -23.06590 -21.97231 -21.93202 -21.17984 -19.66453 -19.11377 -18.68364 -18.27341 -17.69255 -17.12703 -16.89950 -16.77207 -16.31057 -15.96982 -15.89628 -15.60303 -15.36763 -15.03804 -14.68593 -14.48974 -14.27582 -14.20898 -14.03400 -13.78852 -13.64746 -13.44588 -12.98547 -12.92700 -12.73101 -12.61985 -12.45358 -12.28367 -12.08101 -12.07504 -12.00023 -11.68823 -11.62814 -11.38738 -11.13289 -10.71462 -10.53997 -10.23238 -9.99768 -9.71079 -9.04189 -8.31835 -6.45950 1.07611 1.12601 1.23331 1.38907 1.39519 1.51082 1.71421 2.11094 2.36655 2.42104 2.99570 3.00871 3.10415 3.44234 3.57518 3.77185 3.99095 4.03570 4.11018 4.24300 4.25502 4.29565 4.37616 4.60502 4.69356 4.78293 4.80301 4.82127 4.89803 4.91593 4.93084 4.96032 4.97403 5.03475 5.03850 5.11985 5.14297 5.25013 5.43379 5.57790 5.67457 5.77327 5.88333 5.89146 5.98779 6.06402 6.30511 6.64684 6.76949 7.16107 7.23842 7.43242 8.75533 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.001875 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.376900 B =14925.823657 C =15221.124765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.150 4.150 3 C -0.115 4.115 4 C 0.124 3.876 5 H 0.084 0.916 6 O -0.391 6.391 7 C 0.044 3.956 8 C -0.149 4.149 9 C -0.116 4.116 10 H 0.109 0.891 11 C 0.155 3.845 12 N -0.718 5.718 13 C 0.712 3.288 14 O -0.602 6.602 15 N -0.635 5.635 16 C 0.285 3.715 17 C -0.293 4.293 18 C 0.056 3.944 19 N -0.345 5.345 20 C 0.272 3.728 21 C -0.546 4.546 22 H 0.052 0.948 23 C 0.017 3.983 24 N -0.921 5.921 25 Si 0.972 3.028 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.273 1.273 29 N -0.347 5.347 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.415 0.585 42 H 0.421 0.579 43 H 0.166 0.834 44 H 0.200 0.800 45 H 0.022 0.978 46 H 0.058 0.942 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 10.926 27.563 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.150 4.150 3 C -0.171 4.171 4 C 0.066 3.934 5 H 0.101 0.899 6 O -0.311 6.311 7 C -0.031 4.031 8 C -0.186 4.186 9 C -0.134 4.134 10 H 0.127 0.873 11 C 0.031 3.969 12 N -0.375 5.375 13 C 0.411 3.589 14 O -0.480 6.480 15 N -0.287 5.287 16 C 0.029 3.971 17 C -0.324 4.324 18 C -0.093 4.093 19 N -0.127 5.127 20 C 0.154 3.846 21 C -0.584 4.584 22 H 0.071 0.929 23 C -0.183 4.183 24 N -0.559 5.559 25 Si 0.796 3.204 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.198 1.198 29 N -0.178 5.178 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.252 0.748 42 H 0.259 0.741 43 H 0.184 0.816 44 H 0.217 0.783 45 H 0.040 0.960 46 H 0.076 0.924 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.069 10.590 26.920 28.947 hybrid contribution 0.152 0.586 -0.624 0.869 sum 1.222 11.176 26.296 28.599 Atomic orbital electron populations 1.23940 0.95141 1.02845 1.00177 1.22099 0.95708 0.96148 1.01090 1.20807 1.00409 0.93520 1.02391 1.21633 0.91078 0.95005 0.85673 0.89868 1.88475 1.16432 1.95105 1.31085 1.23560 0.83867 1.00898 0.94824 1.23409 0.97221 1.01104 0.96858 1.22899 0.95470 1.00464 0.94616 0.87319 1.21130 0.95178 0.99726 0.80892 1.44761 1.31591 1.49558 1.11618 1.15768 0.82577 0.80717 0.79833 1.90849 1.27023 1.47701 1.82404 1.41352 1.30387 1.47780 1.09209 1.19075 0.94836 0.95229 0.87950 1.21681 1.03203 1.07683 0.99869 1.23153 0.93901 1.00918 0.91300 1.48815 1.18789 1.33012 1.12117 1.19332 0.97460 0.95944 0.71894 1.21396 1.50867 0.92768 0.93396 0.92942 1.25751 0.94043 0.99745 0.98783 1.69993 1.48552 1.23855 1.13528 0.85341 0.78658 0.78709 0.77658 1.19745 1.19760 1.19753 1.77238 1.21186 1.16735 1.02654 0.87189 0.88137 0.90925 0.91499 0.91587 0.91010 0.88790 0.87561 0.90243 0.91575 0.91844 0.74839 0.74133 0.81641 0.78309 0.96050 0.92400 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 13.93 67.78 0.94 -1.46 16 2 C -0.15 -1.99 5.07 -16.49 -0.08 -2.08 16 3 C -0.11 -1.23 9.79 71.24 0.70 -0.53 16 4 C 0.12 1.66 3.35 30.31 0.10 1.76 16 5 H 0.08 1.19 7.49 -2.39 -0.02 1.17 16 6 O -0.39 -6.11 10.84 -148.98 -1.62 -7.73 16 7 C 0.04 0.42 7.78 72.65 0.56 0.99 16 8 C -0.15 -1.17 6.55 32.05 0.21 -0.96 16 9 C -0.12 -1.15 2.47 -9.53 -0.02 -1.18 16 10 H 0.11 0.87 6.70 -2.39 -0.02 0.86 16 11 C 0.15 2.30 4.98 86.38 0.43 2.73 16 12 N -0.72 -11.71 5.49 -478.52 -2.63 -14.33 16 13 C 0.71 19.27 8.53 179.05 1.53 20.80 16 14 O -0.60 -20.92 13.47 -4.02 -0.05 -20.98 16 15 N -0.64 -18.55 5.46 -321.23 -1.75 -20.30 16 16 C 0.28 11.31 8.11 133.31 1.08 12.39 16 17 C -0.29 -11.58 9.61 22.11 0.21 -11.37 16 18 C 0.06 2.22 11.44 83.52 0.96 3.17 16 19 N -0.35 -16.27 3.67 -351.84 -1.29 -17.56 16 20 C 0.27 14.16 6.26 85.63 0.54 14.70 16 21 C -0.55 -30.78 9.24 25.60 0.24 -30.55 16 22 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 23 C 0.02 0.94 5.46 84.66 0.46 1.40 16 24 N -0.92 -52.10 13.29 21.45 0.28 -51.82 16 25 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 29 N -0.35 -16.05 12.42 -54.44 -0.68 -16.73 16 30 H 0.11 1.21 7.83 -2.91 -0.02 1.19 16 31 H 0.10 1.26 7.85 -2.91 -0.02 1.24 16 32 H 0.07 0.63 7.08 -2.39 -0.02 0.61 16 33 H 0.07 0.64 7.78 -2.39 -0.02 0.62 16 34 H 0.07 0.75 8.13 -2.38 -0.02 0.73 16 35 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.76 7.93 -2.39 -0.02 0.74 16 39 H 0.07 1.11 7.99 -2.39 -0.02 1.10 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.41 3.96 8.49 -92.71 -0.79 3.17 16 42 H 0.42 9.49 8.84 -92.71 -0.82 8.67 16 43 H 0.17 6.40 5.91 -2.91 -0.02 6.39 16 44 H 0.20 6.28 8.06 -2.91 -0.02 6.25 16 45 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 47 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.84 393.02 1.54 -71.31 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.61 Total: 22.83 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 7.85 Total: 9.82 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.06 Total: -120.74 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.67 Total: -28.71 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -72.84 1.54 -71.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280984395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.148 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds