Wall clock time and date at job start Tue Mar 31 2020 19:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.52993 * 109.47193 * 125.00037 * 3 2 1 5 5 H 1.09001 * 109.47425 * 54.99817 * 4 3 2 6 6 C 1.53003 * 109.47046 * 174.99807 * 4 3 2 7 7 C 1.52998 * 109.47375 * 184.99735 * 6 4 3 8 8 N 1.46503 * 109.46940 * 294.99829 * 4 3 2 9 9 C 1.34777 * 119.99756 * 155.00333 * 8 4 3 10 10 O 1.21356 * 120.00089 * 359.97438 * 9 8 4 11 11 C 1.49348 * 119.99813 * 179.97438 * 9 8 4 12 12 O 1.21379 * 120.00052 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99813 * 179.97438 * 11 9 8 14 14 C 1.39931 * 119.99485 * 179.97438 * 13 11 9 15 15 C 1.40457 * 125.98512 * 359.71759 * 14 13 11 16 16 C 1.35213 * 107.86927 * 179.82501 * 15 14 13 17 17 C 1.50699 * 126.06467 * 180.17996 * 16 15 14 18 18 N 1.34995 * 107.87371 * 0.42908 * 16 15 14 19 19 C 1.46502 * 125.97127 * 179.72621 * 18 16 15 20 20 C 1.50705 * 109.46964 * 269.97928 * 19 18 16 21 21 H 1.07996 * 119.99637 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99851 * 180.02562 * 20 19 18 23 23 N 1.31523 * 119.99866 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47280 * 59.99848 * 24 22 20 26 26 H 1.48507 * 109.47018 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47136 * 299.99670 * 24 22 20 28 28 N 1.31273 * 125.97587 * 180.02562 * 14 13 11 29 29 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 30 30 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 31 31 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 32 32 H 1.09003 * 109.46806 * 245.00403 * 3 2 1 33 33 H 1.08997 * 109.46799 * 4.99500 * 3 2 1 34 34 H 1.08996 * 109.47076 * 305.00131 * 6 4 3 35 35 H 1.09004 * 109.46587 * 64.99958 * 6 4 3 36 36 H 1.08996 * 109.47305 * 180.02562 * 7 6 4 37 37 H 1.09009 * 109.47115 * 300.00188 * 7 6 4 38 38 H 1.09005 * 109.47099 * 59.99561 * 7 6 4 39 39 H 0.97003 * 120.00368 * 334.99607 * 8 4 3 40 40 H 0.97000 * 120.00326 * 0.02562 * 13 11 9 41 41 H 1.07999 * 126.06428 * 359.96224 * 15 14 13 42 42 H 1.09004 * 109.47063 * 270.29531 * 17 16 15 43 43 H 1.08995 * 109.46988 * 30.29740 * 17 16 15 44 44 H 1.09000 * 109.47356 * 150.29653 * 17 16 15 45 45 H 1.09007 * 109.47072 * 29.97657 * 19 18 16 46 46 H 1.08996 * 109.47128 * 149.97895 * 19 18 16 47 47 H 0.97000 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4573 1.1403 6 6 3.8877 2.6016 1.1109 7 6 4.9421 2.5699 2.2191 8 7 2.2786 1.3224 2.4361 9 6 2.8474 0.8476 3.5619 10 8 3.9860 0.4285 3.5364 11 6 2.0764 0.8372 4.8410 12 8 0.9377 1.2567 4.8667 13 7 2.6450 0.3619 5.9667 14 6 1.9228 0.3527 7.1652 15 6 0.6064 0.8108 7.3390 16 6 0.2711 0.6273 8.6360 17 6 -1.0523 0.9742 9.2678 18 7 1.3341 0.0833 9.2658 19 6 1.4036 -0.2732 10.6850 20 6 1.9139 0.9047 11.4745 21 1 2.1620 1.8265 10.9694 22 6 2.0649 0.8052 12.8413 23 7 1.7632 -0.3177 13.4562 24 14 2.6981 2.2649 13.8198 25 1 1.7768 3.4161 13.6436 26 1 2.7684 1.9035 15.2585 27 1 4.0520 2.6358 13.3354 28 7 2.3589 -0.0804 8.3251 29 1 -0.5400 -0.9353 -0.0044 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9354 -0.0045 32 1 2.6213 1.4026 -0.9314 33 1 1.3587 2.1316 0.0895 34 1 4.3817 2.6537 0.1407 35 1 3.2497 3.4758 1.2413 36 1 5.5491 3.4737 2.1690 37 1 4.4480 2.5177 3.1894 38 1 5.5799 1.6956 2.0888 39 1 1.3683 1.6571 2.4565 40 1 3.5551 0.0270 5.9463 41 1 -0.0264 1.2326 6.5722 42 1 -1.0201 1.9983 9.6396 43 1 -1.8447 0.8819 8.5251 44 1 -1.2493 0.2932 10.0958 45 1 0.4097 -0.5456 11.0403 46 1 2.0800 -1.1180 10.8147 47 1 1.8698 -0.3878 14.4177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281336024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:57 Heat of formation + Delta-G solvation = 20.052398 kcal Electronic energy + Delta-G solvation = -28282.732287 eV Core-core repulsion = 24274.866752 eV Total energy + Delta-G solvation = -4007.865535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17302 -40.40598 -38.84194 -37.19211 -35.13507 -34.12356 -33.39656 -32.60978 -31.51332 -30.90442 -29.21712 -27.05416 -26.43858 -25.39778 -24.05633 -22.89906 -21.54581 -20.92015 -20.15983 -19.90948 -19.54455 -17.90074 -17.20962 -16.72187 -16.39497 -16.13164 -15.87385 -15.33029 -15.11526 -14.91758 -14.42356 -14.22996 -14.13129 -13.95399 -13.81536 -13.34575 -13.12732 -12.85970 -12.51455 -12.47030 -12.36353 -12.24727 -11.94204 -11.79799 -11.53405 -11.44511 -11.39672 -11.20294 -11.14105 -11.05344 -10.81865 -10.56343 -10.26289 -9.97220 -9.77776 -9.60327 -9.55490 -9.38316 -8.65608 -8.03323 -7.56698 -6.27461 -4.35197 1.22420 1.91141 2.07289 2.64971 3.03384 3.19516 3.22568 3.26511 3.31607 3.66650 3.84872 4.20515 4.28206 4.38955 4.47308 4.67223 4.82308 4.89557 5.06263 5.06497 5.16544 5.29353 5.32890 5.44943 5.51535 5.63036 5.66058 5.72439 5.82772 5.84262 6.03056 6.06292 6.10472 6.18347 6.25783 6.33684 6.37315 6.37596 6.55264 6.86503 6.95201 7.01830 7.29376 7.42525 7.64451 7.68443 7.85820 7.95737 7.98738 8.55740 8.71393 9.31186 10.79981 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002280 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.403358 B =12279.861646 C =13071.607899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C -0.102 4.102 4 C 0.147 3.853 5 H 0.095 0.905 6 C -0.136 4.136 7 C -0.149 4.149 8 N -0.692 5.692 9 C 0.517 3.483 10 O -0.512 6.512 11 C 0.510 3.490 12 O -0.499 6.499 13 N -0.599 5.599 14 C 0.257 3.743 15 C -0.288 4.288 16 C 0.093 3.907 17 C -0.084 4.084 18 N -0.313 5.313 19 C 0.258 3.742 20 C -0.537 4.537 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.311 5.311 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.412 0.588 40 H 0.422 0.578 41 H 0.160 0.840 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 3.465 -26.167 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C -0.139 4.139 4 C 0.043 3.957 5 H 0.113 0.887 6 C -0.174 4.174 7 C -0.206 4.206 8 N -0.346 5.346 9 C 0.297 3.703 10 O -0.387 6.387 11 C 0.290 3.710 12 O -0.372 6.372 13 N -0.247 5.247 14 C 0.005 3.995 15 C -0.319 4.319 16 C -0.039 4.039 17 C -0.143 4.143 18 N -0.095 5.095 19 C 0.140 3.860 20 C -0.576 4.576 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 N -0.142 5.142 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.249 0.751 40 H 0.260 0.740 41 H 0.178 0.822 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.861 2.813 -25.253 25.424 hybrid contribution -0.155 0.996 0.297 1.051 sum -1.015 3.809 -24.956 25.265 Atomic orbital electron populations 1.23896 0.95894 1.02105 1.00465 1.22893 0.96113 0.98202 1.00452 1.21088 0.98494 0.96335 0.98023 1.21170 0.92887 0.99825 0.81838 0.88661 1.21998 0.97942 0.97291 1.00165 1.21833 0.98557 1.01573 0.98649 1.45748 1.18541 1.62517 1.07746 1.19811 0.86638 0.78993 0.84823 1.90793 1.17248 1.45138 1.85495 1.19999 0.86962 0.79562 0.84477 1.90709 1.17294 1.44169 1.84995 1.42010 1.17780 1.59873 1.05069 1.18898 0.92119 1.02534 0.85972 1.21227 0.96509 1.17516 0.96679 1.21081 0.92156 0.98220 0.92405 1.20345 0.90666 1.02770 1.00469 1.49077 1.06773 1.44314 1.09354 1.19736 0.99545 0.97873 0.68835 1.21263 1.45662 0.98607 0.92038 0.91778 1.24923 0.94882 0.96600 0.97331 1.69911 1.47386 1.25342 1.10282 0.86402 0.79658 0.82026 0.78532 1.19926 1.20933 1.19956 1.77332 1.12950 1.27657 0.96215 0.88398 0.88459 0.87267 0.89020 0.90567 0.90725 0.91534 0.93235 0.92604 0.91910 0.75119 0.74045 0.82231 0.90313 0.90738 0.90756 0.92644 0.92873 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 29.01 0.42 -0.76 16 2 C -0.16 -0.99 9.25 -36.03 -0.33 -1.32 16 3 C -0.10 -0.52 5.20 -27.89 -0.15 -0.66 16 4 C 0.15 1.04 2.24 -67.93 -0.15 0.88 16 5 H 0.10 0.78 7.58 -51.93 -0.39 0.39 16 6 C -0.14 -0.92 5.61 -26.73 -0.15 -1.07 16 7 C -0.15 -1.38 8.51 37.16 0.32 -1.06 16 8 N -0.69 -6.20 4.74 -54.27 -0.26 -6.46 16 9 C 0.52 6.23 6.45 -11.63 -0.08 6.16 16 10 O -0.51 -6.87 13.61 5.49 0.07 -6.79 16 11 C 0.51 7.49 7.85 -11.63 -0.09 7.40 16 12 O -0.50 -7.97 13.60 5.47 0.07 -7.90 16 13 N -0.60 -9.85 5.43 -11.58 -0.06 -9.92 16 14 C 0.26 5.23 8.10 -154.55 -1.25 3.97 16 15 C -0.29 -5.74 9.51 -39.82 -0.38 -6.12 16 16 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 17 C -0.08 -1.39 10.11 36.01 0.36 -1.03 16 18 N -0.31 -7.34 3.59 -58.32 -0.21 -7.55 16 19 C 0.26 6.55 5.99 -5.19 -0.03 6.52 16 20 C -0.54 -14.70 9.39 -34.44 -0.32 -15.03 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 24 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 N -0.31 -7.19 12.59 31.41 0.40 -6.80 16 29 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.10 0.54 7.84 -52.49 -0.41 0.13 16 31 H 0.11 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.34 7.79 -51.93 -0.40 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.63 5.65 -51.92 -0.29 0.34 16 38 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 39 H 0.41 3.38 8.07 -40.82 -0.33 3.06 16 40 H 0.42 6.31 8.29 -40.82 -0.34 5.97 16 41 H 0.16 2.99 5.91 -52.49 -0.31 2.68 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 45 H 0.06 1.38 7.04 -51.92 -0.37 1.02 16 46 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -31.26 394.96 -7.79 -39.05 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.97 Total: 7.64 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.50 Total: 0.92 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.60 Total: -54.91 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.15 Total: -14.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.26 -7.79 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281336024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.105 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds