Wall clock time and date at job start Tue Mar 31 2020 19:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 C 1.52993 * 109.47193 * 125.00037 * 3 2 1 5 5 H 1.09001 * 109.47425 * 54.99817 * 4 3 2 6 6 C 1.53003 * 109.47046 * 174.99807 * 4 3 2 7 7 C 1.52998 * 109.47375 * 184.99735 * 6 4 3 8 8 N 1.46503 * 109.46940 * 294.99829 * 4 3 2 9 9 C 1.34777 * 119.99756 * 155.00333 * 8 4 3 10 10 O 1.21356 * 120.00089 * 359.97438 * 9 8 4 11 11 C 1.49348 * 119.99813 * 179.97438 * 9 8 4 12 12 O 1.21379 * 120.00052 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99813 * 179.97438 * 11 9 8 14 14 C 1.39931 * 119.99485 * 179.97438 * 13 11 9 15 15 C 1.40457 * 125.98512 * 359.71759 * 14 13 11 16 16 C 1.35213 * 107.86927 * 179.82501 * 15 14 13 17 17 C 1.50699 * 126.06467 * 180.17996 * 16 15 14 18 18 N 1.34995 * 107.87371 * 0.42908 * 16 15 14 19 19 C 1.46502 * 125.97127 * 179.72621 * 18 16 15 20 20 C 1.50705 * 109.46964 * 269.97928 * 19 18 16 21 21 H 1.07996 * 119.99637 * 359.97438 * 20 19 18 22 22 C 1.37870 * 119.99851 * 180.02562 * 20 19 18 23 23 N 1.31523 * 119.99866 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00062 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47280 * 59.99848 * 24 22 20 26 26 H 1.48507 * 109.47018 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47136 * 299.99670 * 24 22 20 28 28 N 1.31273 * 125.97587 * 180.02562 * 14 13 11 29 29 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 30 30 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 31 31 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 32 32 H 1.09003 * 109.46806 * 245.00403 * 3 2 1 33 33 H 1.08997 * 109.46799 * 4.99500 * 3 2 1 34 34 H 1.08996 * 109.47076 * 305.00131 * 6 4 3 35 35 H 1.09004 * 109.46587 * 64.99958 * 6 4 3 36 36 H 1.08996 * 109.47305 * 180.02562 * 7 6 4 37 37 H 1.09009 * 109.47115 * 300.00188 * 7 6 4 38 38 H 1.09005 * 109.47099 * 59.99561 * 7 6 4 39 39 H 0.97003 * 120.00368 * 334.99607 * 8 4 3 40 40 H 0.97000 * 120.00326 * 0.02562 * 13 11 9 41 41 H 1.07999 * 126.06428 * 359.96224 * 15 14 13 42 42 H 1.09004 * 109.47063 * 270.29531 * 17 16 15 43 43 H 1.08995 * 109.46988 * 30.29740 * 17 16 15 44 44 H 1.09000 * 109.47356 * 150.29653 * 17 16 15 45 45 H 1.09007 * 109.47072 * 29.97657 * 19 18 16 46 46 H 1.08996 * 109.47128 * 149.97895 * 19 18 16 47 47 H 0.97000 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4573 1.1403 6 6 3.8877 2.6016 1.1109 7 6 4.9421 2.5699 2.2191 8 7 2.2786 1.3224 2.4361 9 6 2.8474 0.8476 3.5619 10 8 3.9860 0.4285 3.5364 11 6 2.0764 0.8372 4.8410 12 8 0.9377 1.2567 4.8667 13 7 2.6450 0.3619 5.9667 14 6 1.9228 0.3527 7.1652 15 6 0.6064 0.8108 7.3390 16 6 0.2711 0.6273 8.6360 17 6 -1.0523 0.9742 9.2678 18 7 1.3341 0.0833 9.2658 19 6 1.4036 -0.2732 10.6850 20 6 1.9139 0.9047 11.4745 21 1 2.1620 1.8265 10.9694 22 6 2.0649 0.8052 12.8413 23 7 1.7632 -0.3177 13.4562 24 14 2.6981 2.2649 13.8198 25 1 1.7768 3.4161 13.6436 26 1 2.7684 1.9035 15.2585 27 1 4.0520 2.6358 13.3354 28 7 2.3589 -0.0804 8.3251 29 1 -0.5400 -0.9353 -0.0044 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9354 -0.0045 32 1 2.6213 1.4026 -0.9314 33 1 1.3587 2.1316 0.0895 34 1 4.3817 2.6537 0.1407 35 1 3.2497 3.4758 1.2413 36 1 5.5491 3.4737 2.1690 37 1 4.4480 2.5177 3.1894 38 1 5.5799 1.6956 2.0888 39 1 1.3683 1.6571 2.4565 40 1 3.5551 0.0270 5.9463 41 1 -0.0264 1.2326 6.5722 42 1 -1.0201 1.9983 9.6396 43 1 -1.8447 0.8819 8.5251 44 1 -1.2493 0.2932 10.0958 45 1 0.4097 -0.5456 11.0403 46 1 2.0800 -1.1180 10.8147 47 1 1.8698 -0.3878 14.4177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281336024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:56 Heat of formation + Delta-G solvation = 0.377085 kcal Electronic energy + Delta-G solvation = -28283.585472 eV Core-core repulsion = 24274.866752 eV Total energy + Delta-G solvation = -4008.718720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53145 -41.68442 -39.98123 -37.96313 -36.55122 -35.36848 -34.69077 -33.38623 -33.08200 -32.67304 -29.82833 -28.83651 -27.92656 -26.66349 -24.93246 -24.49908 -22.67018 -21.68786 -21.40261 -21.03759 -20.51674 -19.15560 -18.78376 -18.23056 -17.58883 -17.33612 -17.03967 -16.80327 -16.30109 -16.09001 -15.77772 -15.55264 -15.19290 -14.81124 -14.61115 -14.43708 -14.33788 -14.12093 -13.83786 -13.74024 -13.58147 -13.40167 -13.16090 -13.06150 -12.97132 -12.67153 -12.61783 -12.42560 -12.24195 -12.17958 -12.00432 -11.75491 -11.69297 -11.57731 -11.44987 -10.76917 -10.72597 -10.33119 -10.08057 -9.67038 -9.24201 -8.33951 -6.51177 0.07433 0.87334 1.07896 1.38131 1.39809 1.44047 1.48570 1.72862 1.83563 2.25736 2.33414 2.59624 2.96496 3.27114 3.69740 3.80372 3.95318 4.10422 4.16470 4.28877 4.37444 4.39824 4.53224 4.63465 4.65581 4.71312 4.78807 4.84938 4.91120 4.92021 4.94286 5.01187 5.07165 5.08036 5.13284 5.18618 5.19156 5.35506 5.47221 5.52438 5.78572 5.79205 5.80243 5.86579 5.90755 6.20349 6.21907 6.58094 6.60550 6.84564 6.93532 7.19633 8.72340 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002280 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.403358 B =12279.861646 C =13071.607899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C -0.093 4.093 4 C 0.146 3.854 5 H 0.085 0.915 6 C -0.130 4.130 7 C -0.150 4.150 8 N -0.674 5.674 9 C 0.524 3.476 10 O -0.527 6.527 11 C 0.513 3.487 12 O -0.508 6.508 13 N -0.601 5.601 14 C 0.266 3.734 15 C -0.292 4.292 16 C 0.090 3.910 17 C -0.082 4.082 18 N -0.339 5.339 19 C 0.274 3.726 20 C -0.554 4.554 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.273 1.273 27 H -0.277 1.277 28 N -0.354 5.354 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.418 0.582 40 H 0.428 0.572 41 H 0.176 0.824 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.024 0.976 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 5.229 -28.090 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.130 4.130 4 C 0.043 3.957 5 H 0.103 0.897 6 C -0.168 4.168 7 C -0.207 4.207 8 N -0.328 5.328 9 C 0.304 3.696 10 O -0.404 6.404 11 C 0.294 3.706 12 O -0.381 6.381 13 N -0.251 5.251 14 C 0.012 3.988 15 C -0.323 4.323 16 C -0.040 4.040 17 C -0.140 4.140 18 N -0.121 5.121 19 C 0.155 3.845 20 C -0.592 4.592 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.202 1.202 28 N -0.184 5.184 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.256 0.744 40 H 0.266 0.734 41 H 0.193 0.807 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.594 4.587 -27.233 27.662 hybrid contribution 0.050 0.435 0.734 0.855 sum -1.544 5.023 -26.498 27.014 Atomic orbital electron populations 1.24018 0.96079 1.02504 1.00457 1.23003 0.96241 0.98694 1.00483 1.21074 0.98265 0.96013 0.97690 1.21352 0.93245 0.99770 0.81367 0.89688 1.21990 0.97319 0.97166 1.00367 1.21820 0.99110 1.01378 0.98407 1.45796 1.18780 1.60777 1.07411 1.19314 0.86166 0.79666 0.84496 1.90801 1.17733 1.46392 1.85467 1.20573 0.86944 0.78303 0.84799 1.90680 1.17876 1.44290 1.85269 1.42142 1.17997 1.60487 1.04425 1.19214 0.92555 1.00653 0.86380 1.21453 0.96485 1.17588 0.96753 1.21812 0.92724 0.96775 0.92694 1.20499 0.89553 1.02795 1.01178 1.48865 1.07997 1.46421 1.08846 1.19295 0.98550 0.96330 0.70309 1.21394 1.46425 0.98631 0.92757 0.93177 1.25723 0.94719 0.99241 0.98102 1.69995 1.47784 1.26969 1.10801 0.85422 0.78840 0.78944 0.77390 1.18849 1.19748 1.20242 1.77246 1.13994 1.29898 0.97298 0.88722 0.87516 0.87846 0.86917 0.89308 0.88276 0.90648 0.92571 0.94988 0.93059 0.74404 0.73412 0.80734 0.89647 0.87176 0.91257 0.92623 0.95790 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 14.32 67.78 0.97 -1.12 16 2 C -0.17 -1.75 9.25 25.64 0.24 -1.51 16 3 C -0.09 -0.66 5.20 29.85 0.16 -0.50 16 4 C 0.15 1.73 2.24 44.99 0.10 1.83 16 5 H 0.09 1.26 7.58 -2.39 -0.02 1.24 16 6 C -0.13 -1.42 5.61 30.59 0.17 -1.25 16 7 C -0.15 -2.60 8.51 71.98 0.61 -1.99 16 8 N -0.67 -10.94 4.74 -443.97 -2.10 -13.04 16 9 C 0.52 12.21 6.45 87.24 0.56 12.77 16 10 O -0.53 -14.00 13.61 -3.27 -0.04 -14.04 16 11 C 0.51 14.73 7.85 87.24 0.69 15.41 16 12 O -0.51 -15.59 13.60 -3.34 -0.05 -15.64 16 13 N -0.60 -19.88 5.43 -308.90 -1.68 -21.55 16 14 C 0.27 10.91 8.10 133.40 1.08 11.99 16 15 C -0.29 -11.49 9.51 22.11 0.21 -11.28 16 16 C 0.09 3.71 6.92 41.37 0.29 3.99 16 17 C -0.08 -2.61 10.11 71.24 0.72 -1.89 16 18 N -0.34 -16.35 3.59 -338.43 -1.22 -17.56 16 19 C 0.27 14.45 5.99 85.63 0.51 14.96 16 20 C -0.55 -31.00 9.39 25.60 0.24 -30.76 16 21 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 22 C 0.02 1.27 5.46 84.65 0.46 1.74 16 23 N -0.92 -51.78 13.29 21.45 0.28 -51.50 16 24 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 N -0.35 -16.89 12.59 -54.54 -0.69 -17.58 16 29 H 0.09 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.11 0.93 7.84 -2.91 -0.02 0.91 16 31 H 0.10 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.46 7.79 -2.39 -0.02 0.44 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.03 0.70 5.65 -2.38 -0.01 0.69 16 38 H 0.05 0.99 7.85 -2.38 -0.02 0.97 16 39 H 0.42 5.94 8.07 -92.71 -0.75 5.19 16 40 H 0.43 13.06 8.29 -92.71 -0.77 12.29 16 41 H 0.18 6.28 5.91 -2.91 -0.02 6.26 16 42 H 0.08 2.61 8.14 -2.38 -0.02 2.60 16 43 H 0.11 2.67 8.14 -2.39 -0.02 2.66 16 44 H 0.07 2.27 7.07 -2.39 -0.02 2.25 16 45 H 0.06 2.88 7.04 -2.38 -0.02 2.86 16 46 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -68.39 394.96 3.03 -65.36 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.52 Total: 28.08 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 7.01 Total: 12.40 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -5.40 Total: -121.23 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.09 Total: -29.68 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -68.39 3.03 -65.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281336024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.736 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds