Wall clock time and date at job start Tue Mar 31 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47549 * 2 1 4 4 C 1.53004 * 109.47111 * 239.99739 * 2 1 3 5 5 N 1.46501 * 109.47293 * 120.00258 * 2 1 3 6 6 C 1.34117 * 125.70003 * 74.99585 * 5 2 1 7 7 C 1.38625 * 107.34406 * 180.02562 * 6 5 2 8 8 C 1.46922 * 126.49203 * 180.02562 * 7 6 5 9 9 O 1.21422 * 120.00201 * 359.97438 * 8 7 6 10 10 C 1.49307 * 119.99751 * 180.02562 * 8 7 6 11 11 O 1.21368 * 120.00276 * 7.83571 * 10 8 7 12 12 N 1.34780 * 119.99788 * 187.84808 * 10 8 7 13 13 C 1.46969 * 120.59449 * 7.13437 * 12 10 8 14 14 C 1.53812 * 108.39802 * 124.76175 * 13 12 10 15 15 N 1.46970 * 108.57763 * 49.63401 * 14 13 12 16 16 C 1.36938 * 120.58929 * 124.62405 * 15 14 13 17 17 H 1.07997 * 120.00286 * 207.11544 * 16 15 14 18 18 C 1.38816 * 119.99794 * 27.11806 * 16 15 14 19 19 N 1.31615 * 120.00154 * 17.77527 * 18 16 15 20 20 Si 1.86802 * 119.99921 * 197.77023 * 18 16 15 21 21 H 1.48506 * 109.47066 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47151 * 119.99972 * 20 18 16 23 23 H 1.48497 * 109.47217 * 240.00302 * 20 18 16 24 24 C 1.46960 * 118.81539 * 304.65215 * 15 14 13 25 25 C 1.46963 * 120.59445 * 187.41805 * 12 10 8 26 26 C 1.41559 * 107.01334 * 0.02562 * 7 6 5 27 27 N 1.30351 * 107.99665 * 359.97438 * 26 7 6 28 28 H 1.09000 * 109.46757 * 299.99791 * 1 2 3 29 29 H 1.08997 * 109.47115 * 59.99745 * 1 2 3 30 30 H 1.09007 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47532 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46940 * 300.00764 * 3 2 1 33 33 H 1.09005 * 109.46680 * 59.99908 * 3 2 1 34 34 H 1.08998 * 109.47433 * 300.00271 * 4 2 1 35 35 H 1.09003 * 109.46450 * 60.00588 * 4 2 1 36 36 H 1.09005 * 109.46929 * 179.97438 * 4 2 1 37 37 H 1.08007 * 126.32784 * 0.02718 * 6 5 2 38 38 H 1.09001 * 109.60730 * 244.54595 * 13 12 10 39 39 H 1.09006 * 109.60741 * 5.05757 * 13 12 10 40 40 H 1.08998 * 109.74059 * 289.84999 * 14 13 12 41 41 H 1.08996 * 109.67649 * 169.38438 * 14 13 12 42 42 H 0.96998 * 119.99919 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.60616 * 295.47793 * 24 15 14 44 44 H 1.09000 * 109.74761 * 175.05431 * 24 15 14 45 45 H 1.08996 * 109.60725 * 354.94750 * 25 12 10 46 46 H 1.09004 * 109.61022 * 115.28124 * 25 12 10 47 47 H 1.08007 * 126.00059 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6907 1.1961 6 6 2.0134 -2.0177 1.3905 7 6 2.5580 -2.2539 2.6432 8 6 2.7523 -3.5643 3.2785 9 8 2.4212 -4.5767 2.6957 10 6 3.3559 -3.6510 4.6414 11 8 3.5547 -2.6399 5.2825 12 7 3.6802 -4.8522 5.1596 13 6 3.5922 -6.0689 4.3399 14 6 4.9609 -6.7702 4.3634 15 7 5.4030 -6.8875 5.7601 16 6 5.7316 -8.1080 6.2869 17 1 5.6297 -8.2835 7.3476 18 6 6.1956 -9.1198 5.4574 19 7 6.6510 -8.8298 4.2571 20 14 6.1738 -10.8929 6.0449 21 1 5.6176 -10.9517 7.4206 22 1 5.3279 -11.7057 5.1343 23 1 7.5579 -11.4308 6.0466 24 6 5.4856 -5.6716 6.5814 25 6 4.1223 -4.9696 6.5562 26 6 2.8915 -0.9933 3.1943 27 7 2.5669 -0.0760 2.3269 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.6519 -2.7643 0.6988 38 1 2.8311 -6.7323 4.7506 39 1 3.3338 -5.8017 3.3151 40 1 5.6851 -6.1832 3.7986 41 1 4.8720 -7.7633 3.9232 42 1 6.9755 -9.5368 3.6776 43 1 6.2472 -5.0064 6.1744 44 1 5.7418 -5.9367 7.6071 45 1 4.2141 -3.9763 6.9955 46 1 3.3966 -5.5540 7.1218 47 1 3.3375 -0.8218 4.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330926909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:55 Heat of formation + Delta-G solvation = 57.375312 kcal Electronic energy + Delta-G solvation = -29159.560404 eV Core-core repulsion = 25153.313313 eV Total energy + Delta-G solvation = -4006.247092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67964 -40.16410 -38.11979 -37.16591 -36.73846 -33.83054 -31.32284 -31.06206 -30.51087 -30.09166 -27.97642 -27.87263 -27.29713 -25.44745 -23.55264 -22.93111 -22.43596 -21.41392 -19.94606 -19.81951 -18.70181 -17.30554 -17.01966 -16.14204 -15.89560 -15.80585 -15.29127 -15.03334 -14.84657 -14.64694 -14.31021 -14.07632 -14.02673 -13.67124 -13.48397 -13.18776 -13.14334 -13.03088 -12.78141 -12.74593 -12.65935 -12.31196 -12.27429 -11.84301 -11.69001 -11.61831 -11.41865 -11.07312 -10.83114 -10.71597 -10.56428 -10.46712 -10.17932 -9.96066 -9.81531 -9.69741 -8.87165 -8.71436 -8.54885 -8.27465 -6.69507 -5.82084 -3.25493 0.84774 1.80962 2.05303 2.63652 3.08123 3.35898 3.44060 3.46252 3.62264 3.94405 4.21814 4.32377 4.36092 4.47285 4.50363 4.77866 4.93578 4.97631 5.03592 5.13159 5.19468 5.24467 5.30806 5.34404 5.37526 5.43347 5.48702 5.64515 5.68027 5.79909 5.86961 5.89078 6.03976 6.14819 6.35336 6.40817 6.47504 6.49791 6.65864 6.75007 6.86426 7.25661 7.38978 7.52587 7.53342 7.73806 7.84271 8.33066 8.38807 9.15104 9.78127 10.34446 11.25433 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.002489 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.258376 B =11248.111587 C =11918.174239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.350 5.350 6 C 0.133 3.867 7 C -0.312 4.312 8 C 0.427 3.573 9 O -0.434 6.434 10 C 0.481 3.519 11 O -0.537 6.537 12 N -0.563 5.563 13 C 0.042 3.958 14 C 0.156 3.844 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.133 3.867 25 C 0.089 3.911 26 C 0.114 3.886 27 N -0.305 5.305 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.185 0.815 38 H 0.063 0.937 39 H 0.123 0.877 40 H 0.021 0.979 41 H 0.103 0.897 42 H 0.254 0.746 43 H 0.025 0.975 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 17.814 -10.686 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.092 3.908 3 C -0.201 4.201 4 C -0.222 4.222 5 N -0.128 5.128 6 C -0.020 4.020 7 C -0.325 4.325 8 C 0.302 3.698 9 O -0.309 6.309 10 C 0.266 3.734 11 O -0.416 6.416 12 N -0.295 5.295 13 C -0.081 4.081 14 C 0.030 3.970 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.005 3.995 25 C -0.034 4.034 26 C -0.073 4.073 27 N -0.123 5.123 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.202 0.798 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.039 0.961 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.532 19.005 -11.134 25.342 hybrid contribution 0.125 -2.018 0.470 2.076 sum -12.407 16.987 -10.664 23.584 Atomic orbital electron populations 1.22287 0.92549 1.03388 1.03666 1.20889 0.94654 0.94085 0.81128 1.21913 1.02414 0.92536 1.03225 1.22302 1.02720 1.01189 0.95946 1.48899 1.45414 1.04157 1.14321 1.23099 0.95396 0.86826 0.96631 1.20484 1.19175 0.95167 0.97713 1.21566 0.75003 0.87256 0.85932 1.90342 1.39719 1.36523 1.64290 1.20420 0.80884 0.84115 0.88014 1.90586 1.54682 1.34555 1.61795 1.48177 1.60965 1.07054 1.13286 1.23804 1.01831 0.85047 0.97385 1.21339 0.89019 1.00623 0.86026 1.44075 1.76485 1.02204 1.08837 1.19257 1.37515 0.87963 0.93499 0.91379 1.25048 0.98355 0.99099 0.97245 1.70025 1.43625 1.31458 1.09543 0.86202 0.77281 0.84972 0.78184 1.20233 1.21487 1.21735 1.21266 0.92534 0.89243 0.96422 1.22361 0.98746 1.01463 0.80878 1.24737 0.94752 0.88832 0.99018 1.77190 1.18869 1.22049 0.94229 0.91361 0.90096 0.91602 0.91412 0.90815 0.90790 0.91307 0.89757 0.91166 0.79777 0.91820 0.85999 0.96062 0.87887 0.93555 0.95748 0.91410 0.89716 0.91451 0.77562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 8.72 37.16 0.32 -0.57 16 2 C 0.17 1.22 1.23 -131.82 -0.16 1.06 16 3 C -0.14 -0.94 8.07 37.15 0.30 -0.64 16 4 C -0.16 -0.87 8.28 37.16 0.31 -0.56 16 5 N -0.35 -3.66 3.40 -47.99 -0.16 -3.83 16 6 C 0.13 1.48 10.41 -16.41 -0.17 1.31 16 7 C -0.31 -4.35 6.12 -104.97 -0.64 -4.99 16 8 C 0.43 6.84 7.06 -31.46 -0.22 6.62 16 9 O -0.43 -7.27 13.71 5.43 0.07 -7.19 16 10 C 0.48 8.63 7.71 -11.65 -0.09 8.54 16 11 O -0.54 -9.90 13.72 5.48 0.08 -9.82 16 12 N -0.56 -10.75 2.94 -172.77 -0.51 -11.26 16 13 C 0.04 0.84 6.23 -3.36 -0.02 0.81 16 14 C 0.16 3.75 5.55 -3.36 -0.02 3.73 16 15 N -0.59 -14.84 2.97 -171.77 -0.51 -15.35 16 16 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 17 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 19 N -0.90 -25.89 11.13 55.49 0.62 -25.27 16 20 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 C 0.13 2.81 6.67 -3.60 -0.02 2.78 16 25 C 0.09 1.65 6.60 -3.60 -0.02 1.63 16 26 C 0.11 1.58 11.14 -16.91 -0.19 1.39 16 27 N -0.30 -3.93 11.54 30.90 0.36 -3.57 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.57 8.03 -51.93 -0.42 0.16 16 34 H 0.07 0.34 7.34 -51.93 -0.38 -0.04 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.19 1.56 7.52 -52.48 -0.39 1.17 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.12 2.33 4.18 -55.40 -0.23 2.10 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 2.72 5.90 -51.93 -0.31 2.41 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 45 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.21 2.87 6.30 -52.48 -0.33 2.54 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -31.85 378.55 -7.28 -39.13 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.04 Total: 0.99 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -0.86 Total: 14.07 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.21 Total: -59.28 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.15 Total: -17.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.85 -7.28 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330926909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.501 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds