Wall clock time and date at job start Tue Mar 31 2020 18:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47549 * 2 1 4 4 C 1.53004 * 109.47111 * 239.99739 * 2 1 3 5 5 N 1.46501 * 109.47293 * 120.00258 * 2 1 3 6 6 C 1.34117 * 125.70003 * 74.99585 * 5 2 1 7 7 C 1.38625 * 107.34406 * 180.02562 * 6 5 2 8 8 C 1.46922 * 126.49203 * 180.02562 * 7 6 5 9 9 O 1.21422 * 120.00201 * 359.97438 * 8 7 6 10 10 C 1.49307 * 119.99751 * 180.02562 * 8 7 6 11 11 O 1.21368 * 120.00276 * 7.83571 * 10 8 7 12 12 N 1.34780 * 119.99788 * 187.84808 * 10 8 7 13 13 C 1.46969 * 120.59449 * 7.13437 * 12 10 8 14 14 C 1.53812 * 108.39802 * 124.76175 * 13 12 10 15 15 N 1.46970 * 108.57763 * 49.63401 * 14 13 12 16 16 C 1.36938 * 120.58929 * 124.62405 * 15 14 13 17 17 H 1.07997 * 120.00286 * 207.11544 * 16 15 14 18 18 C 1.38816 * 119.99794 * 27.11806 * 16 15 14 19 19 N 1.31615 * 120.00154 * 17.77527 * 18 16 15 20 20 Si 1.86802 * 119.99921 * 197.77023 * 18 16 15 21 21 H 1.48506 * 109.47066 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47151 * 119.99972 * 20 18 16 23 23 H 1.48497 * 109.47217 * 240.00302 * 20 18 16 24 24 C 1.46960 * 118.81539 * 304.65215 * 15 14 13 25 25 C 1.46963 * 120.59445 * 187.41805 * 12 10 8 26 26 C 1.41559 * 107.01334 * 0.02562 * 7 6 5 27 27 N 1.30351 * 107.99665 * 359.97438 * 26 7 6 28 28 H 1.09000 * 109.46757 * 299.99791 * 1 2 3 29 29 H 1.08997 * 109.47115 * 59.99745 * 1 2 3 30 30 H 1.09007 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47532 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46940 * 300.00764 * 3 2 1 33 33 H 1.09005 * 109.46680 * 59.99908 * 3 2 1 34 34 H 1.08998 * 109.47433 * 300.00271 * 4 2 1 35 35 H 1.09003 * 109.46450 * 60.00588 * 4 2 1 36 36 H 1.09005 * 109.46929 * 179.97438 * 4 2 1 37 37 H 1.08007 * 126.32784 * 0.02718 * 6 5 2 38 38 H 1.09001 * 109.60730 * 244.54595 * 13 12 10 39 39 H 1.09006 * 109.60741 * 5.05757 * 13 12 10 40 40 H 1.08998 * 109.74059 * 289.84999 * 14 13 12 41 41 H 1.08996 * 109.67649 * 169.38438 * 14 13 12 42 42 H 0.96998 * 119.99919 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.60616 * 295.47793 * 24 15 14 44 44 H 1.09000 * 109.74761 * 175.05431 * 24 15 14 45 45 H 1.08996 * 109.60725 * 354.94750 * 25 12 10 46 46 H 1.09004 * 109.61022 * 115.28124 * 25 12 10 47 47 H 1.08007 * 126.00059 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6907 1.1961 6 6 2.0134 -2.0177 1.3905 7 6 2.5580 -2.2539 2.6432 8 6 2.7523 -3.5643 3.2785 9 8 2.4212 -4.5767 2.6957 10 6 3.3559 -3.6510 4.6414 11 8 3.5547 -2.6399 5.2825 12 7 3.6802 -4.8522 5.1596 13 6 3.5922 -6.0689 4.3399 14 6 4.9609 -6.7702 4.3634 15 7 5.4030 -6.8875 5.7601 16 6 5.7316 -8.1080 6.2869 17 1 5.6297 -8.2835 7.3476 18 6 6.1956 -9.1198 5.4574 19 7 6.6510 -8.8298 4.2571 20 14 6.1738 -10.8929 6.0449 21 1 5.6176 -10.9517 7.4206 22 1 5.3279 -11.7057 5.1343 23 1 7.5579 -11.4308 6.0466 24 6 5.4856 -5.6716 6.5814 25 6 4.1223 -4.9696 6.5562 26 6 2.8915 -0.9933 3.1943 27 7 2.5669 -0.0760 2.3269 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.6519 -2.7643 0.6988 38 1 2.8311 -6.7323 4.7506 39 1 3.3338 -5.8017 3.3151 40 1 5.6851 -6.1832 3.7986 41 1 4.8720 -7.7633 3.9232 42 1 6.9755 -9.5368 3.6776 43 1 6.2472 -5.0064 6.1744 44 1 5.7418 -5.9367 7.6071 45 1 4.2141 -3.9763 6.9955 46 1 3.3966 -5.5540 7.1218 47 1 3.3375 -0.8218 4.1629 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330926909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:54 Heat of formation + Delta-G solvation = 38.111628 kcal Electronic energy + Delta-G solvation = -29160.395740 eV Core-core repulsion = 25153.313313 eV Total energy + Delta-G solvation = -4007.082428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.65557 -41.51359 -39.48063 -38.53038 -37.70756 -35.61755 -33.20418 -31.97919 -31.82804 -31.52262 -29.06873 -28.38131 -28.35737 -26.86963 -25.20881 -24.58732 -23.41797 -22.80608 -21.35580 -20.81556 -20.03909 -18.76622 -18.17428 -17.60390 -17.33922 -16.95473 -16.70232 -16.30362 -16.04943 -15.71447 -15.61661 -15.46509 -15.28707 -14.96402 -14.91451 -14.78771 -14.47119 -13.95439 -13.89958 -13.45465 -13.31147 -13.23800 -13.17327 -13.11583 -12.79751 -12.74675 -12.59081 -12.44139 -12.24189 -12.20859 -12.18346 -12.02226 -11.78287 -11.66959 -11.64079 -10.62747 -10.60528 -10.13456 -9.93146 -9.80936 -8.68488 -7.88114 -5.35599 -0.33933 0.80246 1.26234 1.43285 1.48501 1.50432 1.60827 1.71004 2.33944 2.51317 2.93849 3.26522 3.35931 3.59598 3.68609 3.73064 3.84199 3.88551 3.94605 4.22163 4.23661 4.33605 4.42065 4.54878 4.56871 4.59723 4.62674 4.68477 4.70664 4.76366 4.80600 4.81718 4.83545 4.87959 5.03682 5.09480 5.20615 5.22121 5.23070 5.43781 5.45330 5.57769 5.64140 5.86506 6.07295 6.32533 6.35700 6.51595 6.87806 7.09933 7.78357 8.31657 9.17510 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.002489 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.258376 B =11248.111587 C =11918.174239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 C -0.141 4.141 4 C -0.161 4.161 5 N -0.340 5.340 6 C 0.152 3.848 7 C -0.338 4.338 8 C 0.432 3.568 9 O -0.446 6.446 10 C 0.480 3.520 11 O -0.541 6.541 12 N -0.574 5.574 13 C 0.062 3.938 14 C 0.165 3.835 15 N -0.611 5.611 16 C -0.263 4.263 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.289 1.289 23 H -0.294 1.294 24 C 0.131 3.869 25 C 0.099 3.901 26 C 0.106 3.894 27 N -0.318 5.318 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.215 0.785 38 H 0.065 0.935 39 H 0.135 0.865 40 H -0.005 1.005 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.011 0.989 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 18.579 -11.826 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 C -0.199 4.199 4 C -0.219 4.219 5 N -0.117 5.117 6 C -0.003 4.003 7 C -0.351 4.351 8 C 0.310 3.690 9 O -0.322 6.322 10 C 0.265 3.735 11 O -0.420 6.420 12 N -0.306 5.306 13 C -0.061 4.061 14 C 0.038 3.962 15 N -0.334 5.334 16 C -0.392 4.392 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.190 1.190 22 H -0.215 1.215 23 H -0.221 1.221 24 C 0.005 3.995 25 C -0.024 4.024 26 C -0.082 4.082 27 N -0.137 5.137 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.013 0.987 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.029 0.971 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.418 19.834 -12.257 27.413 hybrid contribution 0.708 -2.065 0.763 2.313 sum -13.710 17.769 -11.494 25.215 Atomic orbital electron populations 1.22293 0.90964 1.03884 1.04339 1.21385 0.95830 0.94208 0.80345 1.21925 1.01459 0.92523 1.03969 1.22337 1.01942 1.01814 0.95812 1.49333 1.43801 1.04190 1.14391 1.23491 0.93452 0.87544 0.95800 1.20385 1.21553 0.93974 0.99188 1.21403 0.74562 0.88103 0.84952 1.90309 1.40762 1.36969 1.64141 1.20876 0.80331 0.83471 0.88825 1.90582 1.54638 1.34577 1.62213 1.48218 1.61858 1.07152 1.13414 1.23513 0.98973 0.85167 0.98426 1.21118 0.90573 0.99115 0.85381 1.44335 1.76789 1.02929 1.09363 1.19592 1.36826 0.88975 0.93836 0.90948 1.25819 0.98477 1.02826 0.97496 1.70177 1.44888 1.32331 1.10720 0.85164 0.76784 0.80101 0.78098 1.19003 1.21512 1.22116 1.21375 0.93941 0.87915 0.96274 1.22234 0.97150 1.01943 0.81121 1.24641 0.95234 0.89147 0.99147 1.77150 1.19189 1.22323 0.94993 0.92826 0.87306 0.91201 0.92879 0.87810 0.92319 0.90540 0.87053 0.92426 0.76805 0.91631 0.84860 0.98722 0.90557 0.93932 0.97056 0.90307 0.88300 0.90444 0.78394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.72 71.98 0.63 -0.64 16 2 C 0.16 1.86 1.23 3.60 0.00 1.87 16 3 C -0.14 -1.58 8.07 71.98 0.58 -1.00 16 4 C -0.16 -1.19 8.28 71.98 0.60 -0.59 16 5 N -0.34 -6.54 3.40 -305.73 -1.04 -7.58 16 6 C 0.15 3.08 10.41 84.44 0.88 3.96 16 7 C -0.34 -9.13 6.12 -20.09 -0.12 -9.25 16 8 C 0.43 13.61 7.06 27.53 0.19 13.80 16 9 O -0.45 -14.51 13.71 -3.47 -0.05 -14.56 16 10 C 0.48 17.04 7.71 87.22 0.67 17.71 16 11 O -0.54 -19.77 13.72 -3.30 -0.05 -19.82 16 12 N -0.57 -21.74 2.94 -818.88 -2.41 -24.15 16 13 C 0.06 2.48 6.23 86.56 0.54 3.02 16 14 C 0.16 8.12 5.55 86.56 0.48 8.60 16 15 N -0.61 -31.01 2.97 -697.36 -2.07 -33.08 16 16 C -0.26 -14.29 9.59 84.03 0.81 -13.48 16 17 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 18 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 19 N -0.94 -55.03 11.13 21.65 0.24 -54.78 16 20 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.13 5.58 6.67 86.41 0.58 6.15 16 25 C 0.10 3.59 6.60 86.41 0.57 4.16 16 26 C 0.11 2.91 11.14 85.73 0.95 3.86 16 27 N -0.32 -8.00 11.54 -56.14 -0.65 -8.65 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.85 8.03 -2.38 -0.02 0.83 16 34 H 0.08 0.47 7.34 -2.39 -0.02 0.46 16 35 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 36 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.22 2.94 7.52 -2.91 -0.02 2.92 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.13 5.10 4.18 -57.42 -0.24 4.86 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 41 H 0.08 4.17 5.90 -2.39 -0.01 4.16 16 42 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 3.12 7.94 -2.39 -0.02 3.10 16 45 H 0.10 3.32 7.00 -2.39 -0.02 3.30 16 46 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 47 H 0.20 5.63 6.30 -2.91 -0.02 5.61 16 Total: -1.00 -69.64 378.55 4.53 -65.11 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.75 Total: 15.30 kcal Atomic # 6 Polarization: 27.99 SS G_CDS: 7.77 Total: 35.77 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -5.93 Total: -128.24 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.09 Total: -34.38 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.64 4.53 -65.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330926909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.225 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds