Wall clock time and date at job start Tue Mar 31 2020 19:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52988 * 109.46966 * 2 1 4 4 H 1.09007 * 109.47540 * 304.99598 * 3 2 1 5 5 C 1.50705 * 109.47136 * 185.00253 * 3 2 1 6 6 H 1.08006 * 119.99597 * 239.99963 * 5 3 2 7 7 C 1.37877 * 120.00126 * 59.99484 * 5 3 2 8 8 N 1.31513 * 119.99805 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99846 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46820 * 60.00595 * 9 7 5 11 11 H 1.48501 * 109.46996 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47112 * 300.00302 * 9 7 5 13 13 N 1.46505 * 109.47584 * 65.00121 * 3 2 1 14 14 C 1.34773 * 119.99728 * 275.00054 * 13 3 2 15 15 O 1.21281 * 120.00124 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00010 * 179.97438 * 14 13 3 17 17 H 1.08995 * 110.88524 * 303.81153 * 16 14 13 18 18 C 1.54626 * 110.96850 * 67.62135 * 16 14 13 19 19 C 1.51281 * 104.19654 * 93.31990 * 18 16 14 20 20 O 1.21281 * 124.93987 * 196.27347 * 19 18 16 21 21 N 1.34413 * 110.11550 * 16.25296 * 19 18 16 22 22 C 1.46504 * 124.35249 * 180.38316 * 21 19 18 23 23 C 1.46766 * 111.30251 * 0.40686 * 21 19 18 24 24 H 1.09002 * 110.24599 * 223.98305 * 23 21 19 25 25 C 1.50701 * 110.24518 * 102.06995 * 23 21 19 26 26 C 1.35315 * 126.12864 * 327.65309 * 25 23 21 27 27 C 1.39866 * 107.91799 * 179.97438 * 26 25 23 28 28 N 1.30837 * 108.20888 * 0.02562 * 27 26 25 29 29 N 1.34956 * 126.12429 * 147.34929 * 25 23 21 30 30 C 1.46498 * 126.03496 * 0.03142 * 29 25 23 31 31 H 1.08995 * 109.47140 * 299.99835 * 1 2 3 32 32 H 1.09002 * 109.47487 * 60.00247 * 1 2 3 33 33 H 1.09006 * 109.46983 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46785 * 239.99544 * 2 1 3 35 35 H 1.08997 * 109.46813 * 119.99938 * 2 1 3 36 36 H 0.97002 * 119.99671 * 179.97438 * 8 7 5 37 37 H 0.96998 * 119.99935 * 94.99746 * 13 3 2 38 38 H 1.09008 * 110.48793 * 334.64367 * 18 16 14 39 39 H 1.08998 * 110.59935 * 212.05945 * 18 16 14 40 40 H 1.08999 * 109.46957 * 270.02951 * 22 21 19 41 41 H 1.08997 * 109.46650 * 30.02560 * 22 21 19 42 42 H 1.09000 * 109.46971 * 150.02432 * 22 21 19 43 43 H 1.07996 * 126.03693 * 359.97438 * 26 25 23 44 44 H 1.08002 * 125.89583 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.47201 * 90.00538 * 30 29 25 46 46 H 1.08997 * 109.46746 * 209.99748 * 30 29 25 47 47 H 1.08997 * 109.47403 * 329.99998 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5966 0.1451 -0.2343 11 1 6.3978 0.2166 -2.6504 12 1 6.5004 2.2799 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4341 16 6 0.0362 3.3377 2.6548 17 1 0.1239 2.6503 3.4961 18 6 0.8744 4.6149 2.8942 19 6 0.0355 5.7257 2.3017 20 8 0.4434 6.8352 2.0306 21 7 -1.2276 5.3039 2.1191 22 6 -2.3005 6.1267 1.5551 23 6 -1.3941 3.9132 2.5578 24 1 -1.9769 3.3540 1.8259 25 6 -2.0686 3.8685 3.9047 26 6 -1.9443 4.7874 4.8901 27 6 -2.7320 4.3713 5.9684 28 7 -3.3081 3.2428 5.6423 29 7 -2.9094 2.9077 4.3419 30 6 -3.3281 1.7217 3.5906 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.8292 -0.0606 -2.9502 37 1 2.2719 2.1231 1.9978 38 1 1.8326 4.5444 2.3793 39 1 1.0268 4.7793 3.9608 40 1 -2.8116 6.6576 2.3582 41 1 -1.8764 6.8471 0.8556 42 1 -3.0117 5.4875 1.0317 43 1 -1.3430 5.6837 4.8509 44 1 -2.8445 4.8913 6.9083 45 1 -2.6347 0.9039 3.7868 46 1 -4.3312 1.4301 3.9017 47 1 -3.3299 1.9488 2.5246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332354110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:15 Heat of formation + Delta-G solvation = 14.030714 kcal Electronic energy + Delta-G solvation = -30322.711921 eV Core-core repulsion = 26314.585266 eV Total energy + Delta-G solvation = -4008.126655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84994 -40.45997 -38.83934 -36.51948 -35.11057 -33.50899 -33.20272 -32.31525 -31.04436 -30.55321 -27.64716 -27.21049 -26.82906 -26.53581 -23.79430 -22.79870 -21.35018 -20.45180 -20.28844 -19.47522 -19.25149 -17.97950 -17.07374 -16.56887 -15.79365 -15.62948 -15.57387 -15.53606 -15.07487 -14.75477 -14.49142 -14.34128 -13.88039 -13.63948 -13.59573 -13.21183 -12.92665 -12.84849 -12.66918 -12.61214 -12.53172 -12.29848 -11.98565 -11.83724 -11.67638 -11.50055 -11.31778 -11.05467 -10.90266 -10.87883 -10.40634 -10.27765 -9.87074 -9.74024 -9.54326 -9.19338 -9.13253 -8.94014 -8.68620 -8.57052 -7.98245 -6.18751 -4.28573 1.58908 2.21334 2.56115 2.62047 2.95046 3.08722 3.22491 3.28204 3.29268 3.72300 4.17122 4.21592 4.28322 4.39029 4.42245 4.70159 4.94169 4.98132 5.06442 5.13109 5.17914 5.23244 5.28277 5.35256 5.40581 5.50702 5.52621 5.65151 5.66551 5.71619 5.90930 6.27051 6.31810 6.37624 6.46039 6.52717 6.74611 6.90787 6.98187 7.06836 7.23059 7.29892 7.50885 7.51351 7.62752 7.80260 8.08977 8.10919 8.49839 8.67106 8.94146 9.38862 10.86477 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.003507 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.150206 B = 7982.282587 C = 8811.468922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.510 3.490 15 O -0.541 6.541 16 C -0.116 4.116 17 H 0.118 0.882 18 C -0.146 4.146 19 C 0.526 3.474 20 O -0.526 6.526 21 N -0.602 5.602 22 C 0.100 3.900 23 C 0.214 3.786 24 H 0.117 0.883 25 C 0.072 3.928 26 C -0.255 4.255 27 C 0.045 3.955 28 N -0.294 5.294 29 N -0.363 5.363 30 C 0.094 3.906 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.023 0.977 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.390 0.610 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.143 0.857 44 H 0.183 0.817 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 4.554 13.110 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.347 5.347 14 C 0.293 3.707 15 O -0.419 6.419 16 C -0.139 4.139 17 H 0.136 0.864 18 C -0.186 4.186 19 C 0.314 3.686 20 O -0.402 6.402 21 N -0.336 5.336 22 C -0.042 4.042 23 C 0.106 3.894 24 H 0.134 0.866 25 C -0.057 4.057 26 C -0.285 4.285 27 C -0.141 4.141 28 N -0.115 5.115 29 N -0.146 5.146 30 C -0.047 4.047 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.223 0.777 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.161 0.839 44 H 0.200 0.800 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.771 3.999 12.322 18.191 hybrid contribution 1.734 0.484 0.095 1.803 sum -11.037 4.483 12.417 17.207 Atomic orbital electron populations 1.21835 0.98447 0.98060 1.01017 1.21940 0.92538 0.99764 1.02445 1.18827 0.94357 0.89139 0.80681 0.93197 1.21179 0.90595 1.39328 1.06450 0.92050 1.24867 0.98649 0.94687 0.95319 1.69872 1.35296 1.37429 1.09306 0.86518 0.84773 0.78416 0.77489 1.20120 1.21123 1.20104 1.46470 1.14194 1.55245 1.18783 1.19769 0.83392 0.79507 0.88014 1.90682 1.51452 1.59952 1.39853 1.22351 0.93734 0.97972 0.99831 0.86378 1.22394 1.00167 0.91882 1.04207 1.20723 0.82461 0.88323 0.77118 1.90729 1.75305 1.22100 1.52065 1.47882 1.10575 1.12958 1.62141 1.21546 0.89316 0.94987 0.98354 1.19738 0.95667 0.83631 0.90314 0.86562 1.21265 0.95675 0.91586 0.97188 1.21163 1.09656 1.03559 0.94096 1.23818 0.96486 0.93850 0.99905 1.77389 1.23422 1.16887 0.93820 1.48479 1.35185 1.19157 1.11751 1.21977 1.02315 0.84778 0.95678 0.94519 0.93112 0.95800 0.88184 0.94954 0.92449 0.77748 0.86722 0.86677 0.92565 0.90331 0.91012 0.83937 0.80008 0.90202 0.89081 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.51 37.16 0.32 -2.40 16 2 C -0.13 -2.87 5.45 -26.74 -0.15 -3.02 16 3 C 0.27 6.31 2.24 -69.08 -0.15 6.16 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.76 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.82 11.29 55.43 0.63 -23.19 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -12.79 4.95 -54.93 -0.27 -13.06 16 14 C 0.51 8.56 5.65 -10.99 -0.06 8.50 16 15 O -0.54 -10.76 12.67 5.56 0.07 -10.69 16 16 C -0.12 -1.43 3.06 -90.14 -0.28 -1.70 16 17 H 0.12 1.21 7.89 -51.93 -0.41 0.80 16 18 C -0.15 -1.76 6.39 -26.74 -0.17 -1.93 16 19 C 0.53 7.79 8.00 -10.86 -0.09 7.71 16 20 O -0.53 -9.59 17.60 5.56 0.10 -9.50 16 21 N -0.60 -7.79 2.62 -174.02 -0.46 -8.25 16 22 C 0.10 1.10 10.95 59.85 0.66 1.75 16 23 C 0.21 2.55 2.65 -68.16 -0.18 2.37 16 24 H 0.12 1.48 5.88 -51.93 -0.31 1.17 16 25 C 0.07 0.80 5.91 -82.26 -0.49 0.32 16 26 C -0.26 -2.74 10.30 -40.01 -0.41 -3.15 16 27 C 0.04 0.46 12.02 -17.37 -0.21 0.25 16 28 N -0.29 -3.54 12.58 30.62 0.39 -3.16 16 29 N -0.36 -4.03 4.01 -63.89 -0.26 -4.29 16 30 C 0.09 0.79 11.27 59.85 0.67 1.46 16 31 H 0.04 0.68 5.65 -51.93 -0.29 0.38 16 32 H 0.05 1.10 7.85 -51.93 -0.41 0.69 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.39 6.14 8.54 -40.82 -0.35 5.79 16 38 H 0.11 1.47 7.84 -51.92 -0.41 1.07 16 39 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.14 1.47 8.05 -52.49 -0.42 1.05 16 44 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.70 7.01 -51.93 -0.36 0.34 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -32.26 384.28 -6.96 -39.22 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.00 Total: 7.88 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.93 Total: 4.22 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.03 Total: -51.95 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.26 -6.96 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332354110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.255 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds