Wall clock time and date at job start Tue Mar 31 2020 18:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46949 * 2 1 4 4 H 1.09001 * 109.87023 * 55.52812 * 3 2 1 5 5 C 1.54319 * 109.88556 * 294.51630 * 3 2 1 6 6 C 1.55151 * 102.94268 * 218.39053 * 5 3 2 7 7 C 1.54910 * 101.58242 * 35.49979 * 6 5 3 8 8 N 1.47024 * 109.88240 * 176.70531 * 3 2 1 9 9 C 1.34780 * 125.64580 * 298.33861 * 8 3 2 10 10 O 1.21367 * 120.00069 * 4.60679 * 9 8 3 11 11 C 1.49339 * 119.99869 * 184.61070 * 9 8 3 12 12 O 1.21385 * 120.00141 * 359.97438 * 11 9 8 13 13 N 1.34780 * 119.99869 * 180.02562 * 11 9 8 14 14 C 1.39935 * 119.99554 * 179.97438 * 13 11 9 15 15 C 1.40452 * 125.98254 * 359.72357 * 14 13 11 16 16 C 1.35215 * 107.86761 * 179.88503 * 15 14 13 17 17 C 1.50698 * 126.06433 * 180.13413 * 16 15 14 18 18 N 1.34991 * 107.87675 * 0.36385 * 16 15 14 19 19 C 1.46498 * 125.97428 * 179.73012 * 18 16 15 20 20 C 1.50706 * 109.46848 * 270.02072 * 19 18 16 21 21 H 1.07997 * 120.00189 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99641 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99837 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 120.00091 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47053 * 89.99686 * 24 22 20 26 26 H 1.48494 * 109.46989 * 209.99723 * 24 22 20 27 27 H 1.48498 * 109.46991 * 329.99786 * 24 22 20 28 28 N 1.31276 * 125.97695 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.47815 * 65.01758 * 1 2 3 30 30 H 1.09002 * 109.47262 * 185.02259 * 1 2 3 31 31 H 1.09007 * 109.46791 * 305.01475 * 1 2 3 32 32 H 1.09000 * 109.47359 * 240.00803 * 2 1 3 33 33 H 1.08999 * 109.47818 * 120.00043 * 2 1 3 34 34 H 1.09009 * 110.71894 * 336.75036 * 5 3 2 35 35 H 1.08997 * 110.72582 * 100.02422 * 5 3 2 36 36 H 1.09002 * 111.00793 * 153.57016 * 6 5 3 37 37 H 1.09002 * 111.00422 * 277.42438 * 6 5 3 38 38 H 1.09002 * 110.36973 * 81.83359 * 7 6 5 39 39 H 1.09004 * 110.36668 * 204.04949 * 7 6 5 40 40 H 0.96996 * 120.00216 * 359.97438 * 13 11 9 41 41 H 1.08000 * 126.06892 * 0.02615 * 15 14 13 42 42 H 1.09004 * 109.47226 * 270.27259 * 17 16 15 43 43 H 1.09002 * 109.47312 * 30.27179 * 17 16 15 44 44 H 1.08997 * 109.47621 * 150.27037 * 17 16 15 45 45 H 1.09003 * 109.47168 * 30.01859 * 19 18 16 46 46 H 1.08991 * 109.47112 * 150.02068 * 19 18 16 47 47 H 0.96998 * 120.00066 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6164 1.9853 0.8451 5 6 1.6472 2.1382 -1.3203 6 6 2.8934 3.0051 -1.6405 7 6 4.0421 2.0972 -1.1347 8 7 3.5080 1.4539 0.0795 9 6 4.2435 0.9587 1.0945 10 8 3.7001 0.3746 2.0091 11 6 5.7272 1.1287 1.0938 12 8 6.2708 1.7125 0.1788 13 7 6.4628 0.6330 2.1085 14 6 7.8531 0.7919 2.1076 15 6 8.6091 1.4380 1.1158 16 6 9.9093 1.3818 1.4828 17 6 11.0734 1.9525 0.7146 18 7 9.9802 0.7194 2.6568 19 6 11.2037 0.4282 3.4080 20 6 11.7618 -0.8995 2.9640 21 1 11.2554 -1.4695 2.1991 22 6 12.9188 -1.3864 3.5344 23 7 13.4055 -2.5452 3.1473 24 14 13.7942 -0.4008 4.8580 25 1 13.2687 -0.7874 6.1920 26 1 15.2516 -0.6796 4.8002 27 1 13.5581 1.0480 4.6338 28 7 8.6795 0.3583 3.0308 29 1 -0.3635 0.4340 -0.9315 30 1 -0.3634 -1.0237 0.0900 31 1 -0.3633 0.5897 0.8417 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.4760 1.4035 -2.1072 35 1 0.7671 2.7655 -1.1789 36 1 2.9801 3.1840 -2.7123 37 1 2.8672 3.9454 -1.0898 38 1 4.2900 1.3457 -1.8844 39 1 4.9206 2.6957 -0.8936 40 1 6.0285 0.1662 2.8395 41 1 8.2207 1.8999 0.2201 42 1 11.4548 1.2020 0.0221 43 1 10.7453 2.8290 0.1558 44 1 11.8621 2.2394 1.4100 45 1 11.9388 1.2115 3.2230 46 1 10.9754 0.3884 4.4730 47 1 14.2192 -2.8879 3.5488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338825846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:16 Heat of formation + Delta-G solvation = 16.491130 kcal Electronic energy + Delta-G solvation = -28605.396419 eV Core-core repulsion = 24597.376456 eV Total energy + Delta-G solvation = -4008.019963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27874 -40.55526 -39.06406 -37.81897 -35.18169 -33.79568 -33.34339 -31.93177 -31.61830 -31.19449 -28.26251 -27.50943 -26.52152 -25.82922 -23.80173 -22.70980 -22.24936 -21.40892 -20.20492 -19.94762 -19.03573 -17.49959 -17.29238 -17.15584 -16.46667 -16.13850 -15.70874 -15.35842 -15.01836 -14.73619 -14.59701 -14.20186 -14.02608 -13.87542 -13.65813 -13.41792 -13.27491 -12.75626 -12.65238 -12.50169 -12.44337 -12.37660 -12.10574 -12.00896 -11.73269 -11.63026 -11.57342 -11.33846 -11.20746 -11.07800 -10.82891 -10.75159 -10.64896 -10.03948 -10.02641 -9.63531 -9.47572 -9.01903 -8.80642 -8.10807 -7.61593 -6.28547 -4.32118 1.19041 1.94617 2.56410 2.97710 3.00479 3.14286 3.19579 3.22987 3.60333 3.64174 4.12896 4.18998 4.19251 4.35635 4.42333 4.76134 4.82826 4.92785 4.99516 5.03056 5.12871 5.23092 5.30968 5.37034 5.51284 5.52146 5.56610 5.62503 5.71225 5.74965 5.77206 5.79593 5.89940 5.98046 6.04727 6.09425 6.27962 6.31757 6.41766 6.52195 6.61958 6.95831 7.21446 7.24538 7.27450 7.60143 7.76700 7.92862 8.27423 8.45268 8.76369 9.26149 10.83891 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.002270 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.817036 B =12330.821128 C =12937.815202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.136 3.864 4 H 0.081 0.919 5 C -0.128 4.128 6 C -0.136 4.136 7 C 0.089 3.911 8 N -0.587 5.587 9 C 0.530 3.470 10 O -0.516 6.516 11 C 0.516 3.484 12 O -0.494 6.494 13 N -0.599 5.599 14 C 0.263 3.737 15 C -0.285 4.285 16 C 0.097 3.903 17 C -0.085 4.085 18 N -0.313 5.313 19 C 0.231 3.769 20 C -0.542 4.542 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.885 5.885 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.309 5.309 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.423 0.577 41 H 0.163 0.837 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.070 12.314 -10.180 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.034 3.966 4 H 0.099 0.901 5 C -0.166 4.166 6 C -0.174 4.174 7 C -0.033 4.033 8 N -0.321 5.321 9 C 0.312 3.688 10 O -0.391 6.391 11 C 0.296 3.704 12 O -0.367 6.367 13 N -0.248 5.248 14 C 0.010 3.990 15 C -0.316 4.316 16 C -0.034 4.034 17 C -0.144 4.144 18 N -0.095 5.095 19 C 0.112 3.888 20 C -0.580 4.580 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.522 5.522 24 Si 0.700 3.300 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.139 5.139 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.260 0.740 41 H 0.180 0.820 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.567 11.600 -9.068 26.113 hybrid contribution 0.286 0.279 0.418 0.578 sum -21.281 11.878 -8.650 25.861 Atomic orbital electron populations 1.21710 0.94905 1.02071 1.01780 1.21942 0.96354 0.95862 1.03607 1.21800 0.78822 0.97138 0.98846 0.90130 1.22758 0.98502 0.99133 0.96176 1.22853 0.94060 0.98376 1.02156 1.22795 0.98271 0.96483 0.85718 1.48284 1.07100 1.57302 1.19456 1.19513 0.87153 0.80004 0.82116 1.90775 1.72762 1.40361 1.35243 1.19873 0.87661 0.80306 0.82548 1.90642 1.72084 1.39550 1.34470 1.42006 1.03543 1.54745 1.24462 1.18876 0.83113 1.00838 0.96188 1.21238 0.90577 1.15329 1.04448 1.21077 0.96469 0.97039 0.88842 1.20366 0.94112 1.00637 0.99241 1.48594 1.04834 1.39511 1.16525 1.20051 0.77831 0.98524 0.92439 1.21154 1.09813 1.02566 1.24478 0.90078 1.24807 0.96472 0.94846 0.96381 1.69867 1.21812 1.18252 1.42277 0.86889 0.79588 0.80810 0.82709 1.19592 1.20512 1.18889 1.77340 0.88330 1.25432 1.22791 0.92600 0.92387 0.92548 0.91665 0.90108 0.90134 0.89816 0.89485 0.90442 0.90786 0.87288 0.73970 0.81997 0.89951 0.90564 0.91011 0.93060 0.93521 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.66 37.16 0.36 -0.57 16 2 C -0.14 -1.18 5.38 -26.73 -0.14 -1.32 16 3 C 0.14 1.13 2.94 -66.95 -0.20 0.93 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.13 -0.69 5.61 -24.90 -0.14 -0.83 16 6 C -0.14 -0.78 7.08 -24.59 -0.17 -0.95 16 7 C 0.09 0.78 6.23 -2.53 -0.02 0.76 16 8 N -0.59 -6.19 3.06 -163.56 -0.50 -6.69 16 9 C 0.53 7.05 7.73 -11.64 -0.09 6.96 16 10 O -0.52 -7.70 15.30 5.48 0.08 -7.62 16 11 C 0.52 7.72 7.82 -11.64 -0.09 7.63 16 12 O -0.49 -7.68 10.83 5.47 0.06 -7.62 16 13 N -0.60 -9.90 5.43 -11.58 -0.06 -9.96 16 14 C 0.26 5.25 8.10 -154.55 -1.25 4.00 16 15 C -0.29 -5.52 9.51 -39.82 -0.38 -5.90 16 16 C 0.10 1.93 6.92 -82.28 -0.57 1.36 16 17 C -0.09 -1.35 10.11 36.00 0.36 -0.99 16 18 N -0.31 -7.13 3.59 -58.33 -0.21 -7.34 16 19 C 0.23 5.47 5.06 -5.19 -0.03 5.45 16 20 C -0.54 -15.05 9.94 -34.44 -0.34 -15.39 16 21 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 24 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 28 N -0.31 -7.01 12.59 31.41 0.40 -6.61 16 29 H 0.05 0.28 7.58 -51.93 -0.39 -0.12 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.08 0.89 6.61 -51.93 -0.34 0.55 16 34 H 0.08 0.39 7.79 -51.92 -0.40 -0.01 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.11 1.10 5.89 -51.93 -0.31 0.80 16 40 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 41 H 0.16 2.92 5.91 -52.49 -0.31 2.61 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.11 7.07 -51.93 -0.37 0.74 16 45 H 0.05 1.12 6.10 -51.93 -0.32 0.81 16 46 H 0.05 1.10 7.57 -51.93 -0.39 0.71 16 47 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -32.64 381.09 -8.17 -40.80 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.99 Total: 6.11 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.80 Total: 3.24 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.40 Total: -55.99 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.14 Total: -15.23 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.64 -8.17 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338825846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.295 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds