Wall clock time and date at job start Tue Mar 31 2020 18:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46949 * 2 1 4 4 H 1.09001 * 109.87023 * 55.52812 * 3 2 1 5 5 C 1.54319 * 109.88556 * 294.51630 * 3 2 1 6 6 C 1.55151 * 102.94268 * 218.39053 * 5 3 2 7 7 C 1.54910 * 101.58242 * 35.49979 * 6 5 3 8 8 N 1.47024 * 109.88240 * 176.70531 * 3 2 1 9 9 C 1.34780 * 125.64580 * 298.33861 * 8 3 2 10 10 O 1.21367 * 120.00069 * 4.60679 * 9 8 3 11 11 C 1.49339 * 119.99869 * 184.61070 * 9 8 3 12 12 O 1.21385 * 120.00141 * 359.97438 * 11 9 8 13 13 N 1.34780 * 119.99869 * 180.02562 * 11 9 8 14 14 C 1.39935 * 119.99554 * 179.97438 * 13 11 9 15 15 C 1.40452 * 125.98254 * 359.72357 * 14 13 11 16 16 C 1.35215 * 107.86761 * 179.88503 * 15 14 13 17 17 C 1.50698 * 126.06433 * 180.13413 * 16 15 14 18 18 N 1.34991 * 107.87675 * 0.36385 * 16 15 14 19 19 C 1.46498 * 125.97428 * 179.73012 * 18 16 15 20 20 C 1.50706 * 109.46848 * 270.02072 * 19 18 16 21 21 H 1.07997 * 120.00189 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99641 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99837 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 120.00091 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47053 * 89.99686 * 24 22 20 26 26 H 1.48494 * 109.46989 * 209.99723 * 24 22 20 27 27 H 1.48498 * 109.46991 * 329.99786 * 24 22 20 28 28 N 1.31276 * 125.97695 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.47815 * 65.01758 * 1 2 3 30 30 H 1.09002 * 109.47262 * 185.02259 * 1 2 3 31 31 H 1.09007 * 109.46791 * 305.01475 * 1 2 3 32 32 H 1.09000 * 109.47359 * 240.00803 * 2 1 3 33 33 H 1.08999 * 109.47818 * 120.00043 * 2 1 3 34 34 H 1.09009 * 110.71894 * 336.75036 * 5 3 2 35 35 H 1.08997 * 110.72582 * 100.02422 * 5 3 2 36 36 H 1.09002 * 111.00793 * 153.57016 * 6 5 3 37 37 H 1.09002 * 111.00422 * 277.42438 * 6 5 3 38 38 H 1.09002 * 110.36973 * 81.83359 * 7 6 5 39 39 H 1.09004 * 110.36668 * 204.04949 * 7 6 5 40 40 H 0.96996 * 120.00216 * 359.97438 * 13 11 9 41 41 H 1.08000 * 126.06892 * 0.02615 * 15 14 13 42 42 H 1.09004 * 109.47226 * 270.27259 * 17 16 15 43 43 H 1.09002 * 109.47312 * 30.27179 * 17 16 15 44 44 H 1.08997 * 109.47621 * 150.27037 * 17 16 15 45 45 H 1.09003 * 109.47168 * 30.01859 * 19 18 16 46 46 H 1.08991 * 109.47112 * 150.02068 * 19 18 16 47 47 H 0.96998 * 120.00066 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6164 1.9853 0.8451 5 6 1.6472 2.1382 -1.3203 6 6 2.8934 3.0051 -1.6405 7 6 4.0421 2.0972 -1.1347 8 7 3.5080 1.4539 0.0795 9 6 4.2435 0.9587 1.0945 10 8 3.7001 0.3746 2.0091 11 6 5.7272 1.1287 1.0938 12 8 6.2708 1.7125 0.1788 13 7 6.4628 0.6330 2.1085 14 6 7.8531 0.7919 2.1076 15 6 8.6091 1.4380 1.1158 16 6 9.9093 1.3818 1.4828 17 6 11.0734 1.9525 0.7146 18 7 9.9802 0.7194 2.6568 19 6 11.2037 0.4282 3.4080 20 6 11.7618 -0.8995 2.9640 21 1 11.2554 -1.4695 2.1991 22 6 12.9188 -1.3864 3.5344 23 7 13.4055 -2.5452 3.1473 24 14 13.7942 -0.4008 4.8580 25 1 13.2687 -0.7874 6.1920 26 1 15.2516 -0.6796 4.8002 27 1 13.5581 1.0480 4.6338 28 7 8.6795 0.3583 3.0308 29 1 -0.3635 0.4340 -0.9315 30 1 -0.3634 -1.0237 0.0900 31 1 -0.3633 0.5897 0.8417 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.4760 1.4035 -2.1072 35 1 0.7671 2.7655 -1.1789 36 1 2.9801 3.1840 -2.7123 37 1 2.8672 3.9454 -1.0898 38 1 4.2900 1.3457 -1.8844 39 1 4.9206 2.6957 -0.8936 40 1 6.0285 0.1662 2.8395 41 1 8.2207 1.8999 0.2201 42 1 11.4548 1.2020 0.0221 43 1 10.7453 2.8290 0.1558 44 1 11.8621 2.2394 1.4100 45 1 11.9388 1.2115 3.2230 46 1 10.9754 0.3884 4.4730 47 1 14.2192 -2.8879 3.5488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338825846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:15 Heat of formation + Delta-G solvation = -4.862777 kcal Electronic energy + Delta-G solvation = -28606.322394 eV Core-core repulsion = 24597.376456 eV Total energy + Delta-G solvation = -4008.945938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.59849 -41.81500 -40.15915 -38.79438 -36.59957 -35.29769 -34.46696 -33.28843 -32.86337 -32.62579 -29.33844 -28.81296 -27.95279 -26.99894 -24.89448 -24.07395 -23.20180 -22.36001 -21.42221 -21.24074 -20.25780 -19.25275 -18.60031 -18.34873 -17.72928 -17.35922 -17.02745 -16.71765 -16.27690 -15.99137 -15.70207 -15.44660 -15.08893 -15.03106 -14.71866 -14.55347 -14.36987 -14.02591 -13.90379 -13.78672 -13.65212 -13.45076 -13.28324 -13.00522 -12.97753 -12.67235 -12.63055 -12.52859 -12.31602 -12.13462 -11.97433 -11.83773 -11.61975 -11.58954 -11.53441 -11.41675 -10.91071 -10.63719 -9.89893 -9.69446 -9.23141 -8.41330 -6.52760 -0.00169 0.75723 1.02764 1.34531 1.37468 1.46395 1.66247 1.71788 2.19125 2.25847 2.39811 2.91277 3.04816 3.60399 3.65967 3.75613 3.85793 4.03463 4.18655 4.22561 4.34397 4.35813 4.47572 4.48833 4.56363 4.61074 4.69948 4.76497 4.81119 4.84276 4.93113 4.95593 5.00287 5.03471 5.12691 5.13614 5.16572 5.19330 5.22008 5.25516 5.36284 5.45835 5.72235 5.85169 5.95321 6.08483 6.32311 6.43471 6.50819 6.71628 6.86889 7.10983 8.75310 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.002270 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.817036 B =12330.821128 C =12937.815202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.128 3.872 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.126 4.126 7 C 0.080 3.920 8 N -0.580 5.580 9 C 0.529 3.471 10 O -0.539 6.539 11 C 0.518 3.482 12 O -0.497 6.497 13 N -0.602 5.602 14 C 0.268 3.732 15 C -0.291 4.291 16 C 0.094 3.906 17 C -0.084 4.084 18 N -0.338 5.338 19 C 0.239 3.761 20 C -0.551 4.551 21 H 0.023 0.977 22 C 0.021 3.979 23 N -0.937 5.937 24 Si 0.951 3.049 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.231 1.231 28 N -0.352 5.352 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.427 0.573 41 H 0.177 0.823 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.048 0.952 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.191 15.225 -11.180 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.026 3.974 4 H 0.097 0.903 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.041 4.041 8 N -0.313 5.313 9 C 0.311 3.689 10 O -0.417 6.417 11 C 0.299 3.701 12 O -0.370 6.370 13 N -0.251 5.251 14 C 0.014 3.986 15 C -0.321 4.321 16 C -0.037 4.037 17 C -0.142 4.142 18 N -0.120 5.120 19 C 0.120 3.880 20 C -0.589 4.589 21 H 0.042 0.958 22 C -0.179 4.179 23 N -0.575 5.575 24 Si 0.772 3.228 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.154 1.154 28 N -0.183 5.183 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.265 0.735 41 H 0.194 0.806 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.066 0.934 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.740 14.546 -10.125 28.831 hybrid contribution 0.489 -0.678 0.567 1.010 sum -22.251 13.868 -9.559 27.907 Atomic orbital electron populations 1.21681 0.92983 1.02313 1.02951 1.21894 0.97999 0.95650 1.01985 1.22093 0.77088 0.97390 1.00792 0.90326 1.22788 0.99073 0.99285 0.94385 1.22851 0.92430 0.97659 1.03450 1.22968 0.99238 0.96931 0.84943 1.48474 1.08278 1.55634 1.18880 1.19170 0.86238 0.80618 0.82861 1.90769 1.72702 1.41800 1.36403 1.20295 0.88486 0.79486 0.81822 1.90623 1.72528 1.39454 1.34429 1.42130 1.02363 1.55314 1.25331 1.19189 0.84331 0.99454 0.95577 1.21481 0.90461 1.15456 1.04706 1.21835 0.98067 0.95802 0.87947 1.20540 0.92864 1.01706 0.99116 1.48514 1.04542 1.41151 1.17834 1.19843 0.78820 0.96868 0.92495 1.21233 1.09999 1.04232 1.23437 0.95811 1.25842 0.97131 0.95925 0.98973 1.70029 1.22709 1.20558 1.44229 0.85676 0.77935 0.80654 0.78522 1.19275 1.19877 1.15423 1.77245 0.88952 1.27419 1.24638 0.90472 0.92504 0.92448 0.91686 0.93338 0.89008 0.87494 0.87202 0.90085 0.90445 0.88772 0.73486 0.80564 0.90224 0.86894 0.90357 0.90342 0.93409 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.66 71.98 0.70 -0.84 16 2 C -0.14 -2.20 5.38 30.60 0.16 -2.04 16 3 C 0.13 1.91 2.94 45.34 0.13 2.05 16 4 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.12 -0.87 5.61 31.78 0.18 -0.69 16 6 C -0.13 -1.04 7.08 31.98 0.23 -0.81 16 7 C 0.08 1.27 6.23 86.86 0.54 1.81 16 8 N -0.58 -11.76 3.06 -789.73 -2.42 -14.18 16 9 C 0.53 14.24 7.73 87.23 0.67 14.91 16 10 O -0.54 -16.58 15.30 -3.30 -0.05 -16.63 16 11 C 0.52 15.64 7.82 87.23 0.68 16.32 16 12 O -0.50 -15.27 10.83 -3.35 -0.04 -15.31 16 13 N -0.60 -20.43 5.43 -308.90 -1.68 -22.11 16 14 C 0.27 10.95 8.10 133.40 1.08 12.03 16 15 C -0.29 -11.19 9.51 22.11 0.21 -10.98 16 16 C 0.09 3.70 6.92 41.38 0.29 3.99 16 17 C -0.08 -2.52 10.11 71.24 0.72 -1.80 16 18 N -0.34 -15.61 3.59 -338.45 -1.22 -16.82 16 19 C 0.24 11.33 5.06 85.64 0.43 11.76 16 20 C -0.55 -31.58 9.94 25.60 0.25 -31.33 16 21 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 22 C 0.02 1.18 5.47 84.66 0.46 1.65 16 23 N -0.94 -57.12 13.96 21.45 0.30 -56.82 16 24 Si 0.95 40.72 27.47 68.60 1.88 42.60 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.23 -8.64 6.54 99.48 0.65 -7.99 16 28 N -0.35 -16.47 12.59 -54.54 -0.69 -17.15 16 29 H 0.08 0.52 7.58 -2.39 -0.02 0.50 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 1.03 8.06 -2.39 -0.02 1.01 16 33 H 0.05 1.10 6.61 -2.39 -0.02 1.09 16 34 H 0.09 0.53 7.79 -2.38 -0.02 0.51 16 35 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.80 5.89 -2.38 -0.01 1.79 16 40 H 0.43 13.55 8.29 -92.71 -0.77 12.78 16 41 H 0.18 6.17 5.91 -2.91 -0.02 6.16 16 42 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.08 2.24 7.07 -2.39 -0.02 2.22 16 45 H 0.08 3.27 6.10 -2.39 -0.01 3.25 16 46 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 47 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -75.03 381.09 3.01 -72.02 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.17 Total: 28.36 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.74 Total: 16.03 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -5.70 Total: -127.08 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.09 Total: -31.93 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.60 kcal Total: -75.03 3.01 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338825846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.157 kcal (2) G-P(sol) polarization free energy of solvation -75.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds