Wall clock time and date at job start Tue Mar 31 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99949 * 2 1 4 4 N 1.46503 * 109.46603 * 125.00449 * 3 2 1 5 5 C 1.46498 * 120.00351 * 274.94612 * 4 3 2 6 6 C 1.50702 * 109.47181 * 263.12193 * 5 4 3 7 7 H 1.07999 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99800 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00166 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00026 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47257 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47154 * 119.99488 * 10 8 6 13 13 H 1.48497 * 109.47537 * 239.99628 * 10 8 6 14 14 C 1.34774 * 119.99673 * 94.95168 * 4 3 2 15 15 O 1.21365 * 120.00145 * 3.68275 * 14 4 3 16 16 C 1.49311 * 120.00002 * 183.68265 * 14 4 3 17 17 O 1.21392 * 119.99674 * 354.26986 * 16 14 4 18 18 N 1.34770 * 120.00270 * 174.26263 * 16 14 4 19 19 C 1.39197 * 120.00322 * 180.02562 * 18 16 14 20 20 C 1.36221 * 126.27143 * 359.97438 * 19 18 16 21 21 C 1.39687 * 107.85802 * 180.02562 * 20 19 18 22 22 N 1.30846 * 108.46050 * 359.71488 * 21 20 19 23 23 N 1.35857 * 126.27489 * 180.02562 * 19 18 16 24 24 C 1.46494 * 126.09609 * 359.97438 * 23 19 18 25 25 C 1.53002 * 109.47246 * 89.99778 * 24 23 19 26 26 C 1.52991 * 109.47192 * 295.00028 * 25 24 23 27 27 C 1.53002 * 109.47002 * 174.99596 * 25 24 23 28 28 H 1.08005 * 120.00140 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00121 * 359.97438 * 1 2 3 30 30 H 1.07994 * 120.00121 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47187 * 5.01166 * 3 2 1 32 32 H 1.08993 * 109.46958 * 245.00440 * 3 2 1 33 33 H 1.09007 * 109.46695 * 23.11771 * 5 4 3 34 34 H 1.08997 * 109.47367 * 143.11530 * 5 4 3 35 35 H 0.97000 * 119.99659 * 180.02562 * 9 8 6 36 36 H 0.96998 * 120.00035 * 0.02562 * 18 16 14 37 37 H 1.08000 * 126.06724 * 0.02562 * 20 19 18 38 38 H 1.08001 * 125.76965 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47410 * 329.99579 * 24 23 19 40 40 H 1.09005 * 109.47186 * 209.99986 * 24 23 19 41 41 H 1.09004 * 109.46819 * 55.00265 * 25 24 23 42 42 H 1.09004 * 109.47432 * 299.99862 * 26 25 24 43 43 H 1.09003 * 109.47268 * 59.99987 * 26 25 24 44 44 H 1.08997 * 109.47125 * 179.97438 * 26 25 24 45 45 H 1.08997 * 109.47028 * 180.02562 * 27 25 24 46 46 H 1.09000 * 109.47495 * 300.00068 * 27 25 24 47 47 H 1.09004 * 109.46787 * 60.00650 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5290 1.7630 2.4521 6 6 2.8691 3.2171 2.6543 7 1 3.3807 3.7652 1.8769 8 6 2.5279 3.8475 3.8320 9 7 1.9053 3.1800 4.7789 10 14 2.9501 5.6498 4.0830 11 1 3.6452 6.1680 2.8773 12 1 1.7027 6.4239 4.3067 13 1 3.8385 5.7903 5.2646 14 6 4.2774 0.9597 0.9572 15 8 4.6794 0.6667 -0.1498 16 6 5.2049 0.9079 2.1262 17 8 4.8334 1.2995 3.2135 18 7 6.4544 0.4263 1.9742 19 6 7.3189 0.3775 3.0641 20 6 7.0377 0.7807 4.3345 21 6 8.1751 0.5615 5.1152 22 7 9.1052 0.0421 4.3555 23 7 8.5981 -0.0800 3.0556 24 6 9.3166 -0.6122 1.8952 25 6 10.0389 0.5284 1.1753 26 6 9.0084 1.5027 0.6013 27 6 10.8890 -0.0431 0.0388 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3586 2.1316 0.0898 32 1 2.6212 1.4026 -0.9314 33 1 1.4491 1.6298 2.5184 34 1 3.0167 1.1652 3.2220 35 1 1.6650 3.6237 5.6073 36 1 6.7513 0.1136 1.1053 37 1 6.1015 1.1961 4.6772 38 1 8.2690 0.7789 6.1689 39 1 8.6079 -1.0815 1.2128 40 1 10.0455 -1.3517 2.2270 41 1 10.6821 1.0540 1.8812 42 1 8.3652 0.9772 -0.1046 43 1 8.4028 1.9099 1.4110 44 1 9.5229 2.3155 0.0889 45 1 11.4039 0.7695 -0.4738 46 1 11.6232 -0.7372 0.4478 47 1 10.2458 -0.5686 -0.6671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340615250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:05 Heat of formation + Delta-G solvation = 31.975669 kcal Electronic energy + Delta-G solvation = -29885.107353 eV Core-core repulsion = 25877.758850 eV Total energy + Delta-G solvation = -4007.348503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.73026 -41.53890 -39.59711 -37.68219 -37.44992 -35.90873 -35.01144 -33.82234 -32.76242 -30.36476 -29.44140 -28.20117 -27.94910 -27.23755 -25.58998 -24.50357 -22.87542 -22.01923 -21.08421 -20.88997 -20.41710 -19.30531 -18.63104 -18.24746 -17.71586 -17.12176 -16.83701 -16.42389 -16.35639 -16.09411 -16.06919 -15.68332 -15.28058 -14.85673 -14.61474 -14.46344 -14.27512 -14.13493 -14.10887 -13.86175 -13.53397 -13.16677 -13.04551 -12.90818 -12.81791 -12.74878 -12.46136 -12.39077 -12.27824 -12.09514 -11.97421 -11.90987 -11.81385 -11.65436 -11.58946 -10.71689 -10.45771 -10.10445 -9.94802 -9.66561 -9.18347 -8.13666 -6.22710 0.14704 0.77283 0.98271 1.31111 1.38659 1.42193 1.50865 1.80531 1.84287 2.23366 2.41243 2.58946 3.20442 3.24848 3.47584 3.70477 3.93049 3.96322 4.03405 4.15165 4.20967 4.35503 4.46694 4.54075 4.55201 4.56171 4.72134 4.77885 4.81936 4.83045 4.83830 4.96618 5.03302 5.07939 5.12886 5.25302 5.36034 5.38260 5.46065 5.67732 5.71371 5.75894 5.83494 5.85264 6.05944 6.12379 6.25942 6.63539 6.74100 6.81050 6.98478 7.44057 8.94553 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.004279 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.458918 B = 6542.242414 C = 8107.871786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.136 3.864 4 N -0.556 5.556 5 C 0.241 3.759 6 C -0.525 4.525 7 H 0.045 0.955 8 C 0.027 3.973 9 N -0.916 5.916 10 Si 0.948 3.052 11 H -0.274 1.274 12 H -0.274 1.274 13 H -0.284 1.284 14 C 0.513 3.487 15 O -0.555 6.555 16 C 0.496 3.504 17 O -0.453 6.453 18 N -0.618 5.618 19 C 0.309 3.691 20 C -0.306 4.306 21 C 0.062 3.938 22 N -0.303 5.303 23 N -0.379 5.379 24 C 0.124 3.876 25 C -0.105 4.105 26 C -0.157 4.157 27 C -0.138 4.138 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.021 0.979 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.425 0.575 37 H 0.149 0.851 38 H 0.211 0.789 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.148 -8.677 -9.214 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.203 4.203 3 C 0.014 3.986 4 N -0.285 5.285 5 C 0.121 3.879 6 C -0.564 4.564 7 H 0.063 0.937 8 C -0.173 4.173 9 N -0.556 5.556 10 Si 0.774 3.226 11 H -0.198 1.198 12 H -0.199 1.199 13 H -0.210 1.210 14 C 0.295 3.705 15 O -0.436 6.436 16 C 0.277 3.723 17 O -0.321 6.321 18 N -0.270 5.270 19 C 0.089 3.911 20 C -0.338 4.338 21 C -0.123 4.123 22 N -0.125 5.125 23 N -0.168 5.168 24 C 0.004 3.996 25 C -0.125 4.125 26 C -0.215 4.215 27 C -0.196 4.196 28 H 0.138 0.862 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.264 0.736 37 H 0.166 0.834 38 H 0.228 0.772 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.141 -8.984 -9.012 17.588 hybrid contribution -0.772 1.358 0.216 1.577 sum 11.369 -7.626 -8.795 16.272 Atomic orbital electron populations 1.24072 0.95104 1.03230 0.97483 1.23142 0.96782 0.97753 1.02633 1.20796 0.91885 0.96824 0.89056 1.48209 1.07816 1.59256 1.13249 1.19628 0.94858 0.95136 0.78244 1.21414 1.38008 0.95687 1.01274 0.93700 1.25468 0.94884 1.01575 0.95389 1.70018 1.41029 1.37700 1.06835 0.85669 0.78070 0.80972 0.77877 1.19839 1.19913 1.20981 1.19531 0.83626 0.79525 0.87814 1.90649 1.76359 1.51588 1.25021 1.20403 0.82444 0.79433 0.90062 1.90906 1.73235 1.40917 1.27000 1.42419 1.11045 1.62129 1.11382 1.17997 0.84345 0.99628 0.89132 1.21723 1.03257 1.16816 0.92015 1.24086 0.90069 0.96920 1.01261 1.77315 1.22120 1.25426 0.87681 1.48998 1.07196 1.51629 1.08973 1.22202 0.97262 0.96925 0.83167 1.21492 0.97128 0.95633 0.98203 1.21988 0.99093 1.00060 1.00314 1.21745 0.99474 1.01627 0.96765 0.86235 0.87780 0.87528 0.89361 0.88797 0.96064 0.92780 0.92714 0.73561 0.83398 0.77221 0.87900 0.86561 0.91471 0.91538 0.95392 0.91330 0.91561 0.91027 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 14.32 67.78 0.97 -3.00 16 2 C -0.18 -5.37 9.84 25.65 0.25 -5.12 16 3 C 0.14 4.61 5.90 85.63 0.50 5.11 16 4 N -0.56 -23.00 2.46 -832.25 -2.05 -25.05 16 5 C 0.24 11.94 4.79 85.63 0.41 12.35 16 6 C -0.53 -28.43 8.31 25.60 0.21 -28.22 16 7 H 0.04 2.47 7.81 -2.91 -0.02 2.45 16 8 C 0.03 1.48 5.46 84.65 0.46 1.95 16 9 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 10 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 C 0.51 20.52 7.66 87.23 0.67 21.19 16 15 O -0.55 -21.20 15.98 -3.29 -0.05 -21.26 16 16 C 0.50 19.87 7.72 87.23 0.67 20.54 16 17 O -0.45 -21.44 9.49 -3.38 -0.03 -21.47 16 18 N -0.62 -20.02 4.62 -309.58 -1.43 -21.45 16 19 C 0.31 10.22 6.23 131.25 0.82 11.04 16 20 C -0.31 -11.21 9.65 22.15 0.21 -11.00 16 21 C 0.06 1.89 12.00 85.19 1.02 2.91 16 22 N -0.30 -9.10 12.56 -57.14 -0.72 -9.82 16 23 N -0.38 -10.50 3.46 -344.66 -1.19 -11.70 16 24 C 0.12 2.33 5.70 86.38 0.49 2.82 16 25 C -0.10 -1.84 3.13 -10.79 -0.03 -1.87 16 26 C -0.16 -3.34 8.09 71.98 0.58 -2.76 16 27 C -0.14 -1.59 9.19 71.98 0.66 -0.93 16 28 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 30 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.09 2.97 7.76 -2.39 -0.02 2.95 16 32 H 0.09 3.04 7.23 -2.39 -0.02 3.03 16 33 H 0.02 1.10 8.02 -2.38 -0.02 1.08 16 34 H 0.05 2.95 5.41 -2.39 -0.01 2.94 16 35 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.42 11.47 6.31 -92.71 -0.59 10.88 16 37 H 0.15 6.39 5.83 -2.91 -0.02 6.37 16 38 H 0.21 4.88 8.06 -2.91 -0.02 4.86 16 39 H 0.10 1.58 7.52 -2.39 -0.02 1.56 16 40 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.07 1.29 7.56 -2.38 -0.02 1.27 16 43 H 0.03 0.77 6.14 -2.39 -0.01 0.75 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -67.00 389.48 5.15 -61.85 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.40 Total: 30.25 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.91 Total: 25.00 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.10 Total: -120.59 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.08 Total: -42.72 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.00 5.15 -61.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340615250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.825 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds