Wall clock time and date at job start Tue Mar 31 2020 18:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47138 * 119.99998 * 2 1 3 5 5 N 1.46500 * 109.46925 * 175.00015 * 4 2 1 6 6 N 1.39931 * 125.75020 * 90.02889 * 5 4 2 7 7 C 1.30449 * 108.89685 * 179.97438 * 6 5 4 8 8 C 1.41293 * 108.02222 * 359.97438 * 7 6 5 9 9 C 1.47426 * 126.41892 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00266 * 185.41801 * 9 8 7 11 11 N 1.34773 * 119.99766 * 5.40594 * 9 8 7 12 12 C 1.46499 * 120.00257 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47637 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99926 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00489 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00387 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00019 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00370 * 179.97438 * 16 15 13 19 19 N 1.31420 * 119.99946 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00310 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47230 * 89.99899 * 20 18 16 22 22 H 1.48501 * 109.47320 * 209.99892 * 20 18 16 23 23 H 1.48496 * 109.47250 * 329.99957 * 20 18 16 24 24 C 1.34257 * 125.75220 * 270.26787 * 5 4 2 25 25 C 1.50701 * 126.29726 * 0.04151 * 24 5 4 26 26 C 1.52998 * 117.49311 * 311.57374 * 25 24 5 27 27 C 1.52997 * 117.49649 * 242.91298 * 25 24 5 28 28 H 1.08993 * 109.47181 * 299.99965 * 1 2 3 29 29 H 1.09001 * 109.46857 * 60.00040 * 1 2 3 30 30 H 1.09001 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47278 * 240.00364 * 2 1 3 32 32 H 1.09003 * 109.47314 * 300.00276 * 3 2 1 33 33 H 1.09001 * 109.47035 * 59.99646 * 3 2 1 34 34 H 1.09000 * 109.47340 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46834 * 55.00285 * 4 2 1 36 36 H 1.09000 * 109.46737 * 295.00317 * 4 2 1 37 37 H 1.07997 * 125.99260 * 180.02562 * 7 6 5 38 38 H 0.97002 * 120.00016 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47243 * 300.00488 * 12 11 9 40 40 H 1.08996 * 109.47218 * 59.99979 * 12 11 9 41 41 H 0.97007 * 119.99792 * 359.97438 * 15 13 12 42 42 H 0.96992 * 120.00198 * 180.02562 * 19 18 16 43 43 H 1.08997 * 115.55067 * 97.23739 * 25 24 5 44 44 H 1.08995 * 117.50231 * 359.97438 * 26 25 24 45 45 H 1.09001 * 117.49590 * 145.02383 * 26 25 24 46 46 H 1.09005 * 117.50009 * 214.97239 * 27 25 24 47 47 H 1.08995 * 117.50329 * 359.97325 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 7 4.4082 0.1110 1.6953 7 6 5.6213 -0.3105 1.4667 8 6 5.5340 -1.5520 0.7977 9 6 6.6640 -2.3847 0.3470 10 8 6.4565 -3.3888 -0.3068 11 7 7.9269 -2.0330 0.6594 12 6 9.0499 -2.8601 0.2111 13 6 10.3435 -2.2529 0.6892 14 8 10.3290 -1.2300 1.3408 15 7 11.5167 -2.8468 0.3936 16 6 12.6935 -2.2946 0.8290 17 1 12.6805 -1.3838 1.4093 18 6 13.9030 -2.9073 0.5248 19 7 13.9187 -4.0164 -0.1799 20 14 15.5064 -2.1553 1.1187 21 1 15.8472 -2.7072 2.4545 22 1 16.5911 -2.4795 0.1577 23 1 15.3557 -0.6812 1.2160 24 6 4.1923 -1.8360 0.6393 25 6 3.6116 -3.0568 -0.0268 26 6 2.5086 -3.8108 0.7187 27 6 3.9100 -4.4168 0.6074 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1583 2.1369 37 1 6.5328 0.1995 1.7415 38 1 8.0924 -1.2322 1.1811 39 1 8.9473 -3.8650 0.6208 40 1 9.0522 -2.9103 -0.8777 41 1 11.5283 -3.6655 -0.1266 42 1 14.7629 -4.4443 -0.3920 43 1 3.5446 -3.0121 -1.1138 44 1 2.2033 -3.4242 1.6910 45 1 1.7162 -4.2627 0.1220 46 1 4.0388 -5.2671 -0.0623 47 1 4.5266 -4.4286 1.5061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343512068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:03 Heat of formation + Delta-G solvation = 16.474837 kcal Electronic energy + Delta-G solvation = -28413.559253 eV Core-core repulsion = 24405.538583 eV Total energy + Delta-G solvation = -4008.020669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69789 -39.11008 -37.93280 -37.25865 -36.69105 -34.34802 -33.56217 -32.23220 -31.34158 -30.33417 -28.00633 -27.56616 -26.46146 -24.57969 -23.55101 -22.80119 -21.96491 -21.13335 -20.10684 -19.66059 -19.20531 -18.09775 -17.62951 -16.32843 -15.98355 -15.64030 -15.53880 -15.27646 -15.04039 -14.92816 -14.62116 -14.41281 -14.05916 -13.96899 -13.70895 -13.41478 -13.26045 -13.04380 -12.71650 -12.44912 -12.22704 -12.09446 -11.91098 -11.76000 -11.61732 -11.60414 -11.36926 -11.29710 -11.22897 -11.09944 -10.72572 -10.43577 -10.38199 -10.28787 -9.60336 -9.57045 -9.47403 -8.80762 -8.58515 -8.47873 -8.06513 -6.48402 -3.90154 1.46085 2.14321 2.20162 3.14056 3.24025 3.29156 3.47462 3.59751 3.67708 3.80364 4.10191 4.14404 4.21028 4.28780 4.52032 4.59754 4.66323 4.75290 4.93229 4.95857 4.97445 5.02104 5.16709 5.20378 5.23366 5.25642 5.31057 5.36867 5.47196 5.51621 5.63977 5.71264 5.76977 5.82633 5.85093 5.96964 5.98181 6.02225 6.04001 6.13147 6.38191 6.71771 6.81886 7.48671 7.49092 7.95710 7.99971 8.48707 8.64452 9.08036 9.43214 9.91326 10.68576 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002176 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.739569 B =12867.151494 C =13708.947893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.127 3.873 5 N -0.353 5.353 6 N -0.294 5.294 7 C 0.082 3.918 8 C -0.281 4.281 9 C 0.590 3.410 10 O -0.549 6.549 11 N -0.706 5.706 12 C 0.113 3.887 13 C 0.429 3.571 14 O -0.597 6.597 15 N -0.551 5.551 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.181 3.819 25 C -0.094 4.094 26 C -0.190 4.190 27 C -0.124 4.124 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.192 0.808 38 H 0.408 0.592 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.950 2.751 0.035 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.006 3.994 5 N -0.132 5.132 6 N -0.113 5.113 7 C -0.105 4.105 8 C -0.296 4.296 9 C 0.378 3.622 10 O -0.428 6.428 11 N -0.359 5.359 12 C -0.015 4.015 13 C 0.215 3.785 14 O -0.483 6.483 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.536 5.536 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C 0.049 3.951 25 C -0.114 4.114 26 C -0.227 4.227 27 C -0.162 4.162 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.209 0.791 38 H 0.246 0.754 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.146 0.854 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.753 3.575 0.474 27.986 hybrid contribution 1.603 -0.318 -0.180 1.644 sum -26.150 3.257 0.295 26.354 Atomic orbital electron populations 1.21774 0.93692 1.02191 1.02569 1.21518 0.96441 0.97573 0.97607 1.21830 1.02164 0.94708 1.01722 1.22074 0.74079 1.03034 1.00197 1.48434 1.06565 1.14808 1.43345 1.77201 0.98783 1.13365 1.21954 1.24148 0.96353 0.93994 0.96027 1.19985 0.92556 1.00491 1.16574 1.17126 0.81698 0.84116 0.79310 1.90736 1.85054 1.26668 1.40379 1.45465 1.04585 1.29578 1.56303 1.20898 0.85488 0.94792 1.00293 1.19788 0.84981 0.87370 0.86382 1.90491 1.86730 1.26299 1.44820 1.41797 1.04641 1.24731 1.47374 1.19725 0.82374 1.09368 1.31839 0.87694 1.25321 0.99839 0.95950 0.96694 1.69616 1.28146 1.17907 1.37903 0.85815 0.80439 0.79459 0.78328 1.20307 1.20843 1.19335 1.20465 0.90670 0.90020 0.93978 1.20394 1.03235 0.89129 0.98600 1.23221 0.93272 1.04527 1.01675 1.22811 0.96027 0.94698 1.02658 0.92230 0.91856 0.92250 0.90494 0.92643 0.92428 0.91857 0.88216 0.88572 0.79109 0.75391 0.89920 0.89912 0.77046 0.91645 0.85399 0.88942 0.87888 0.87683 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.19 37.16 0.34 -0.33 16 2 C -0.11 -0.76 3.13 -90.62 -0.28 -1.05 16 3 C -0.15 -1.19 9.04 37.16 0.34 -0.85 16 4 C 0.13 0.96 5.59 -4.04 -0.02 0.93 16 5 N -0.35 -3.90 3.19 -56.60 -0.18 -4.08 16 6 N -0.29 -3.79 11.55 30.86 0.36 -3.44 16 7 C 0.08 1.08 11.50 -16.98 -0.20 0.89 16 8 C -0.28 -4.04 6.12 -105.06 -0.64 -4.68 16 9 C 0.59 9.80 7.81 -12.52 -0.10 9.70 16 10 O -0.55 -10.00 14.69 5.28 0.08 -9.92 16 11 N -0.71 -12.15 5.52 -62.57 -0.35 -12.50 16 12 C 0.11 2.11 6.15 -5.20 -0.03 2.07 16 13 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 14 O -0.60 -15.32 15.24 5.55 0.08 -15.24 16 15 N -0.55 -13.72 5.29 -10.97 -0.06 -13.77 16 16 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 19 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 20 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 C 0.18 2.23 6.44 -81.60 -0.53 1.71 16 25 C -0.09 -0.97 5.01 -91.77 -0.46 -1.43 16 26 C -0.19 -1.43 8.81 -26.69 -0.24 -1.66 16 27 C -0.12 -1.28 8.96 -26.69 -0.24 -1.52 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.67 6.94 -51.93 -0.36 0.31 16 35 H 0.10 0.59 5.10 -51.93 -0.26 0.32 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.19 2.17 7.53 -52.49 -0.40 1.78 16 38 H 0.41 6.92 6.42 -40.82 -0.26 6.66 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.48 7.90 -40.82 -0.32 9.15 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.09 0.65 6.88 -51.93 -0.36 0.30 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -32.03 392.26 -7.81 -39.83 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.97 Total: 15.12 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.38 Total: 5.72 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.50 Total: -57.07 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.16 Total: -25.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.03 -7.81 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.307 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds