Wall clock time and date at job start Tue Mar 31 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 C 1.52999 * 109.47138 * 119.99998 * 2 1 3 5 5 N 1.46500 * 109.46925 * 175.00015 * 4 2 1 6 6 N 1.39931 * 125.75020 * 90.02889 * 5 4 2 7 7 C 1.30449 * 108.89685 * 179.97438 * 6 5 4 8 8 C 1.41293 * 108.02222 * 359.97438 * 7 6 5 9 9 C 1.47426 * 126.41892 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00266 * 185.41801 * 9 8 7 11 11 N 1.34773 * 119.99766 * 5.40594 * 9 8 7 12 12 C 1.46499 * 120.00257 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47637 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99926 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00489 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00387 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00019 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00370 * 179.97438 * 16 15 13 19 19 N 1.31420 * 119.99946 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00310 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47230 * 89.99899 * 20 18 16 22 22 H 1.48501 * 109.47320 * 209.99892 * 20 18 16 23 23 H 1.48496 * 109.47250 * 329.99957 * 20 18 16 24 24 C 1.34257 * 125.75220 * 270.26787 * 5 4 2 25 25 C 1.50701 * 126.29726 * 0.04151 * 24 5 4 26 26 C 1.52998 * 117.49311 * 311.57374 * 25 24 5 27 27 C 1.52997 * 117.49649 * 242.91298 * 25 24 5 28 28 H 1.08993 * 109.47181 * 299.99965 * 1 2 3 29 29 H 1.09001 * 109.46857 * 60.00040 * 1 2 3 30 30 H 1.09001 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47278 * 240.00364 * 2 1 3 32 32 H 1.09003 * 109.47314 * 300.00276 * 3 2 1 33 33 H 1.09001 * 109.47035 * 59.99646 * 3 2 1 34 34 H 1.09000 * 109.47340 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46834 * 55.00285 * 4 2 1 36 36 H 1.09000 * 109.46737 * 295.00317 * 4 2 1 37 37 H 1.07997 * 125.99260 * 180.02562 * 7 6 5 38 38 H 0.97002 * 120.00016 * 0.02562 * 11 9 8 39 39 H 1.09004 * 109.47243 * 300.00488 * 12 11 9 40 40 H 1.08996 * 109.47218 * 59.99979 * 12 11 9 41 41 H 0.97007 * 119.99792 * 359.97438 * 15 13 12 42 42 H 0.96992 * 120.00198 * 180.02562 * 19 18 16 43 43 H 1.08997 * 115.55067 * 97.23739 * 25 24 5 44 44 H 1.08995 * 117.50231 * 359.97438 * 26 25 24 45 45 H 1.09001 * 117.49590 * 145.02383 * 26 25 24 46 46 H 1.09005 * 117.50009 * 214.97239 * 27 25 24 47 47 H 1.08995 * 117.50329 * 359.97325 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 7 4.4082 0.1110 1.6953 7 6 5.6213 -0.3105 1.4667 8 6 5.5340 -1.5520 0.7977 9 6 6.6640 -2.3847 0.3470 10 8 6.4565 -3.3888 -0.3068 11 7 7.9269 -2.0330 0.6594 12 6 9.0499 -2.8601 0.2111 13 6 10.3435 -2.2529 0.6892 14 8 10.3290 -1.2300 1.3408 15 7 11.5167 -2.8468 0.3936 16 6 12.6935 -2.2946 0.8290 17 1 12.6805 -1.3838 1.4093 18 6 13.9030 -2.9073 0.5248 19 7 13.9187 -4.0164 -0.1799 20 14 15.5064 -2.1553 1.1187 21 1 15.8472 -2.7072 2.4545 22 1 16.5911 -2.4795 0.1577 23 1 15.3557 -0.6812 1.2160 24 6 4.1923 -1.8360 0.6393 25 6 3.6116 -3.0568 -0.0268 26 6 2.5086 -3.8108 0.7187 27 6 3.9100 -4.4168 0.6074 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1583 2.1369 37 1 6.5328 0.1995 1.7415 38 1 8.0924 -1.2322 1.1811 39 1 8.9473 -3.8650 0.6208 40 1 9.0522 -2.9103 -0.8777 41 1 11.5283 -3.6655 -0.1266 42 1 14.7629 -4.4443 -0.3920 43 1 3.5446 -3.0121 -1.1138 44 1 2.2033 -3.4242 1.6910 45 1 1.7162 -4.2627 0.1220 46 1 4.0388 -5.2671 -0.0623 47 1 4.5266 -4.4286 1.5061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343512068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:02 Heat of formation + Delta-G solvation = -4.380463 kcal Electronic energy + Delta-G solvation = -28414.463606 eV Core-core repulsion = 24405.538583 eV Total energy + Delta-G solvation = -4008.925023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.65551 -40.66491 -39.59120 -38.03138 -37.32972 -36.19828 -35.16040 -33.37439 -33.05646 -31.37453 -29.40839 -28.10126 -27.47670 -26.30885 -24.54774 -23.56142 -22.98829 -21.86460 -21.32901 -21.08598 -20.38690 -19.96854 -18.87136 -17.50951 -17.07571 -17.05487 -16.65716 -16.48335 -16.29837 -16.18685 -15.75137 -15.66566 -15.43827 -15.25078 -14.83040 -14.66960 -14.25324 -13.90696 -13.78999 -13.53645 -13.48537 -13.19778 -13.03113 -12.97245 -12.89455 -12.47007 -12.44312 -12.31979 -12.19689 -12.11852 -11.91897 -11.77397 -11.55681 -11.44691 -11.18488 -10.86237 -10.53408 -10.36085 -10.16121 -10.06282 -9.59129 -8.49639 -5.99553 0.46543 1.11790 1.30914 1.37289 1.43326 1.55998 1.92490 2.14962 2.36561 2.46165 2.76736 3.16744 3.17604 3.33178 3.43270 3.71668 3.82694 3.92086 3.95705 3.98923 4.12811 4.21370 4.29485 4.33120 4.42612 4.47085 4.48863 4.57002 4.64129 4.73467 4.78170 4.81494 4.92218 5.00286 5.01092 5.10206 5.16771 5.22471 5.32634 5.33213 5.37165 5.40109 5.42609 5.87622 5.93828 6.47431 6.50537 6.66856 7.05169 7.29526 7.46841 7.96851 8.67307 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002176 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.739569 B =12867.151494 C =13708.947893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.146 4.146 4 C 0.118 3.882 5 N -0.343 5.343 6 N -0.307 5.307 7 C 0.077 3.923 8 C -0.312 4.312 9 C 0.593 3.407 10 O -0.568 6.568 11 N -0.709 5.709 12 C 0.127 3.873 13 C 0.433 3.567 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.336 4.336 17 H 0.086 0.914 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.997 3.003 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.189 3.811 25 C -0.110 4.110 26 C -0.152 4.152 27 C -0.143 4.143 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.200 0.800 38 H 0.409 0.591 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.279 0.721 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.132 0.868 46 H 0.106 0.894 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.100 2.473 0.084 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.204 4.204 4 C -0.001 4.001 5 N -0.121 5.121 6 N -0.126 5.126 7 C -0.110 4.110 8 C -0.327 4.327 9 C 0.382 3.618 10 O -0.449 6.449 11 N -0.362 5.362 12 C -0.001 4.001 13 C 0.220 3.780 14 O -0.512 6.512 15 N -0.196 5.196 16 C -0.465 4.465 17 H 0.104 0.896 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.820 3.180 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.195 1.195 24 C 0.055 3.945 25 C -0.130 4.130 26 C -0.189 4.189 27 C -0.180 4.180 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.217 0.783 38 H 0.247 0.753 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.120 0.880 45 H 0.151 0.849 46 H 0.124 0.876 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.941 3.301 0.524 30.126 hybrid contribution 2.149 -0.210 -0.200 2.169 sum -27.791 3.090 0.324 27.965 Atomic orbital electron populations 1.21747 0.91495 1.03392 1.03064 1.21479 0.98084 0.96225 0.96758 1.21817 1.00223 0.96052 1.02262 1.22481 0.71939 1.04716 1.01006 1.48731 1.07645 1.13785 1.41953 1.77160 0.98909 1.14092 1.22392 1.24305 0.96964 0.93796 0.95959 1.19920 0.92800 1.01168 1.18769 1.17392 0.81732 0.84007 0.78697 1.90713 1.85254 1.27574 1.41324 1.45469 1.04555 1.29534 1.56674 1.20719 0.83596 0.94996 1.00771 1.20463 0.85865 0.86635 0.85014 1.90468 1.87416 1.27525 1.45758 1.41840 1.04766 1.25053 1.47912 1.19729 0.83914 1.09624 1.33260 0.89633 1.26129 1.02522 0.96208 0.96386 1.69681 1.29253 1.18541 1.38142 0.84867 0.76515 0.78408 0.78190 1.19573 1.19638 1.19517 1.20746 0.90226 0.90584 0.92966 1.20480 1.05488 0.88198 0.98840 1.23341 0.92284 1.01426 1.01808 1.22769 0.98422 0.94828 1.02024 0.91516 0.91634 0.90710 0.91321 0.92033 0.92015 0.94759 0.85930 0.87691 0.78327 0.75296 0.88794 0.88844 0.76688 0.91103 0.85128 0.87990 0.84945 0.87553 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 71.98 0.66 -0.20 16 2 C -0.11 -1.22 3.13 -10.79 -0.03 -1.25 16 3 C -0.15 -2.21 9.04 71.98 0.65 -1.56 16 4 C 0.12 1.49 5.59 86.38 0.48 1.97 16 5 N -0.34 -7.20 3.19 -332.99 -1.06 -8.26 16 6 N -0.31 -7.83 11.55 -56.27 -0.65 -8.48 16 7 C 0.08 2.06 11.50 85.65 0.99 3.05 16 8 C -0.31 -9.03 6.12 -20.15 -0.12 -9.16 16 9 C 0.59 19.94 7.81 86.66 0.68 20.62 16 10 O -0.57 -20.83 14.69 -4.02 -0.06 -20.89 16 11 N -0.71 -24.81 5.52 -470.13 -2.59 -27.40 16 12 C 0.13 4.77 6.15 85.63 0.53 5.30 16 13 C 0.43 20.38 7.85 87.66 0.69 21.07 16 14 O -0.62 -32.80 15.24 -3.06 -0.05 -32.85 16 15 N -0.56 -28.51 5.29 -307.00 -1.62 -30.13 16 16 C -0.34 -18.72 9.68 84.04 0.81 -17.90 16 17 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 18 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 19 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 20 Si 1.00 42.23 29.55 68.60 2.03 44.26 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.19 4.53 6.44 42.14 0.27 4.80 16 25 C -0.11 -2.12 5.01 -11.54 -0.06 -2.18 16 26 C -0.15 -1.80 8.81 30.62 0.27 -1.53 16 27 C -0.14 -2.80 8.96 30.62 0.27 -2.52 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.03 0.72 6.94 -2.39 -0.02 0.70 16 35 H 0.12 0.99 5.10 -2.39 -0.01 0.97 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.20 4.71 7.53 -2.91 -0.02 4.69 16 38 H 0.41 14.25 6.42 -92.71 -0.59 13.65 16 39 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.40 19.47 7.90 -92.70 -0.73 18.74 16 42 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 43 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.10 1.05 6.88 -2.39 -0.02 1.04 16 45 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.69 392.26 2.51 -67.17 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -0.32 Total: 44.99 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 6.55 Total: 20.34 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -5.64 Total: -123.03 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.11 Total: -53.74 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.69 2.51 -67.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.794 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds