Wall clock time and date at job start Tue Mar 31 2020 19:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47277 * 2 1 4 4 H 1.09004 * 109.46595 * 54.99903 * 3 2 1 5 5 C 1.52997 * 109.46968 * 295.00011 * 3 2 1 6 6 N 1.46499 * 109.47267 * 174.99780 * 3 2 1 7 7 N 1.39930 * 125.75540 * 60.02456 * 6 3 2 8 8 C 1.30444 * 108.89790 * 179.97438 * 7 6 3 9 9 C 1.41290 * 108.02381 * 0.02562 * 8 7 6 10 10 C 1.47433 * 126.41445 * 180.02562 * 9 8 7 11 11 O 1.21603 * 119.99685 * 185.40191 * 10 9 8 12 12 N 1.34769 * 119.99841 * 5.40260 * 10 9 8 13 13 C 1.46497 * 120.00131 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47577 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00100 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00055 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99929 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99961 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00106 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00064 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00240 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46839 * 60.00753 * 21 19 17 23 23 H 1.48498 * 109.47180 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47346 * 300.00803 * 21 19 17 25 25 C 1.34258 * 125.75266 * 239.71564 * 6 3 2 26 26 C 1.50699 * 126.29239 * 0.02562 * 25 6 3 27 27 C 1.53011 * 117.49624 * 312.38684 * 26 25 6 28 28 C 1.53002 * 60.00099 * 252.51430 * 27 26 25 29 29 H 1.08997 * 109.47223 * 300.00131 * 1 2 3 30 30 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47205 * 60.00221 * 1 2 3 32 32 H 1.09003 * 109.46879 * 120.00160 * 2 1 3 33 33 H 1.08998 * 109.47668 * 239.99578 * 2 1 3 34 34 H 1.08995 * 109.47010 * 299.99918 * 5 3 2 35 35 H 1.09002 * 109.47268 * 59.99766 * 5 3 2 36 36 H 1.08997 * 109.47362 * 179.97438 * 5 3 2 37 37 H 1.08003 * 125.98897 * 180.02562 * 8 7 6 38 38 H 0.97005 * 120.00354 * 0.02562 * 12 10 9 39 39 H 1.09009 * 109.47317 * 300.00084 * 13 12 10 40 40 H 1.09004 * 109.47585 * 59.99358 * 13 12 10 41 41 H 0.97000 * 120.00176 * 0.02562 * 16 14 13 42 42 H 0.96997 * 120.00767 * 179.97438 * 20 19 17 43 43 H 1.08995 * 115.55694 * 98.09781 * 26 25 6 44 44 H 1.08999 * 117.49585 * 0.02562 * 27 26 25 45 45 H 1.09003 * 117.49560 * 145.02187 * 27 26 25 46 46 H 1.09001 * 117.49397 * 252.51368 * 28 27 26 47 47 H 1.09001 * 117.50275 * 107.48777 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4443 0.1204 7 7 4.3951 0.8495 -0.7758 8 6 5.6126 1.0499 -0.3525 9 6 5.5415 1.7908 0.8485 10 6 6.6814 2.2395 1.6688 11 8 6.4839 2.7879 2.7360 12 7 7.9423 2.0417 1.2359 13 6 9.0750 2.4870 2.0513 14 6 10.3641 2.1491 1.3477 15 8 10.3391 1.5917 0.2707 16 7 11.5447 2.4673 1.9146 17 6 12.7175 2.1595 1.2746 18 1 12.6953 1.6624 0.3161 19 6 13.9347 2.4880 1.8588 20 7 13.9617 3.0933 3.0249 21 14 15.5326 2.0692 0.9866 22 1 15.5711 2.7528 -0.3311 23 1 16.6807 2.5211 1.8129 24 1 15.6162 0.6003 0.7849 25 6 4.2052 2.0218 1.1062 26 6 3.6413 2.7794 2.2806 27 6 2.5715 3.8348 1.9925 28 6 3.9839 4.2664 2.3923 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 2.0699 1.5875 -2.1491 35 1 0.5489 2.1252 -1.3969 36 1 1.9982 3.1543 -1.3072 37 1 6.5166 0.7092 -0.8354 38 1 8.0998 1.6046 0.3844 39 1 9.0138 3.5651 2.2004 40 1 9.0467 1.9844 3.0181 41 1 11.5647 2.9135 2.7756 42 1 14.8114 3.3224 3.4329 43 1 3.5526 2.2124 3.2072 44 1 2.2754 3.9807 0.9537 45 1 1.7787 3.9620 2.7298 46 1 4.1203 4.6776 3.3925 47 1 4.6173 4.6966 1.6164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344170762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:41 Heat of formation + Delta-G solvation = -4.902954 kcal Electronic energy + Delta-G solvation = -28415.884848 eV Core-core repulsion = 24406.937168 eV Total energy + Delta-G solvation = -4008.947680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.67890 -40.67230 -39.60175 -38.04711 -37.29734 -36.19872 -35.16306 -33.36373 -32.66248 -31.38645 -30.17924 -28.97943 -26.60768 -25.68765 -24.53363 -23.84137 -22.98494 -22.49741 -21.34421 -20.71645 -20.30074 -19.98393 -18.74350 -17.67253 -17.20163 -16.99711 -16.65287 -16.42926 -16.22715 -16.10094 -15.99618 -15.65925 -15.39126 -15.18555 -14.82313 -14.74506 -14.26624 -13.90121 -13.71294 -13.52963 -13.46652 -13.20505 -13.02732 -12.88544 -12.82348 -12.74085 -12.45594 -12.40971 -12.33578 -12.12855 -11.95851 -11.76804 -11.54881 -11.43826 -11.21737 -10.86179 -10.53447 -10.38137 -10.16614 -10.06487 -9.60525 -8.49355 -5.99436 0.45685 1.11869 1.26911 1.39111 1.43271 1.54223 1.92633 2.14601 2.36387 2.45516 2.74532 3.16563 3.17739 3.31411 3.33297 3.77366 3.79699 3.88951 3.91025 4.00695 4.12980 4.20582 4.28684 4.33913 4.41521 4.43095 4.48383 4.48646 4.57783 4.70653 4.76003 4.80620 4.90156 4.98890 5.03228 5.08770 5.09954 5.19784 5.22970 5.34553 5.38597 5.40115 5.43388 5.89420 5.93730 6.47130 6.50437 6.66350 7.05081 7.28922 7.46779 7.96843 8.67311 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.002161 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.767351 B =12955.323660 C =13745.080153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.143 3.857 4 H 0.129 0.871 5 C -0.159 4.159 6 N -0.343 5.343 7 N -0.307 5.307 8 C 0.077 3.923 9 C -0.311 4.311 10 C 0.593 3.407 11 O -0.568 6.568 12 N -0.708 5.708 13 C 0.127 3.873 14 C 0.433 3.567 15 O -0.624 6.624 16 N -0.560 5.560 17 C -0.337 4.337 18 H 0.086 0.914 19 C -0.012 4.012 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.186 3.814 26 C -0.113 4.113 27 C -0.154 4.154 28 C -0.141 4.141 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.201 0.799 38 H 0.409 0.591 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.132 0.868 44 H 0.100 0.900 45 H 0.133 0.867 46 H 0.108 0.892 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.383 -0.325 -2.442 29.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.043 3.957 4 H 0.146 0.854 5 C -0.216 4.216 6 N -0.122 5.122 7 N -0.126 5.126 8 C -0.110 4.110 9 C -0.326 4.326 10 C 0.382 3.618 11 O -0.449 6.449 12 N -0.362 5.362 13 C -0.001 4.001 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.195 5.195 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.195 1.195 25 C 0.052 3.948 26 C -0.133 4.133 27 C -0.190 4.190 28 C -0.179 4.179 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.218 0.782 38 H 0.247 0.753 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.150 0.850 44 H 0.118 0.882 45 H 0.151 0.849 46 H 0.126 0.874 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -30.236 -0.785 -3.237 30.419 hybrid contribution 2.196 0.014 0.313 2.218 sum -28.040 -0.771 -2.924 28.203 Atomic orbital electron populations 1.21789 0.92026 1.03155 1.03412 1.21810 0.98381 0.93925 1.02428 1.22003 0.72081 0.99437 1.02168 0.85386 1.22179 1.04003 1.00121 0.95309 1.48977 1.07602 1.39173 1.16404 1.77088 0.99298 1.20747 1.15465 1.24316 0.96810 0.96163 0.93717 1.19924 0.92799 1.17247 1.02626 1.17384 0.81787 0.77868 0.84751 1.90712 1.85601 1.45048 1.23539 1.45465 1.04298 1.61747 1.24690 1.20723 0.83441 1.01465 0.94463 1.20459 0.85801 0.84401 0.87337 1.90467 1.87464 1.48908 1.24332 1.41836 1.04546 1.52104 1.21051 1.19697 0.83783 1.38241 1.04917 0.89620 1.26127 1.02461 0.95973 0.96651 1.69672 1.28960 1.40215 1.16742 0.84930 0.76295 0.78782 0.77984 1.19526 1.19602 1.19537 1.20794 0.90178 0.93276 0.90540 1.20513 1.05982 0.91868 0.94919 1.23346 0.92637 0.99224 1.03822 1.22758 0.98105 0.93728 1.03349 0.91060 0.91704 0.90889 0.92578 0.91933 0.92507 0.87358 0.92459 0.78246 0.75283 0.88791 0.88837 0.76688 0.91090 0.84991 0.88154 0.84881 0.87403 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 71.98 0.70 -0.30 16 2 C -0.13 -1.64 5.65 30.59 0.17 -1.47 16 3 C 0.14 1.96 2.60 44.99 0.12 2.08 16 4 H 0.13 1.25 5.64 -2.39 -0.01 1.23 16 5 C -0.16 -1.82 9.20 71.98 0.66 -1.16 16 6 N -0.34 -7.48 3.25 -312.62 -1.02 -8.50 16 7 N -0.31 -8.04 12.33 -56.27 -0.69 -8.73 16 8 C 0.08 2.10 11.50 85.65 0.99 3.09 16 9 C -0.31 -9.15 6.12 -20.15 -0.12 -9.28 16 10 C 0.59 20.12 7.81 86.67 0.68 20.80 16 11 O -0.57 -21.01 14.80 -4.04 -0.06 -21.06 16 12 N -0.71 -24.92 5.52 -470.11 -2.59 -27.52 16 13 C 0.13 4.78 6.15 85.63 0.53 5.31 16 14 C 0.43 20.40 7.85 87.66 0.69 21.09 16 15 O -0.62 -32.84 15.24 -3.06 -0.05 -32.89 16 16 N -0.56 -28.53 5.29 -306.99 -1.62 -30.15 16 17 C -0.34 -18.79 9.68 84.04 0.81 -17.98 16 18 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 21 Si 1.00 42.23 29.55 68.60 2.03 44.25 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 C 0.19 4.59 6.45 42.14 0.27 4.87 16 26 C -0.11 -2.24 4.82 -11.53 -0.06 -2.29 16 27 C -0.15 -1.92 8.52 30.60 0.26 -1.66 16 28 C -0.14 -2.81 9.09 30.60 0.28 -2.54 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.07 0.35 6.56 -2.39 -0.02 0.33 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.60 6.57 -2.39 -0.02 0.58 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.20 4.78 7.53 -2.91 -0.02 4.76 16 38 H 0.41 14.32 6.42 -92.70 -0.59 13.72 16 39 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 40 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.40 19.50 7.90 -92.71 -0.73 18.76 16 42 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.10 1.14 7.44 -2.39 -0.02 1.12 16 45 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.89 392.20 2.40 -67.50 By element: Atomic # 1 Polarization: 45.76 SS G_CDS: -0.32 Total: 45.45 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.44 Total: 20.43 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.64 Total: -123.68 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -0.11 Total: -53.95 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -69.89 2.40 -67.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344170762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.592 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds