Wall clock time and date at job start Tue Mar 31 2020 19:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47235 * 2 1 4 4 H 1.09007 * 109.46883 * 305.00509 * 3 2 1 5 5 C 1.53005 * 109.46912 * 64.99594 * 3 2 1 6 6 N 1.46499 * 109.47459 * 184.99945 * 3 2 1 7 7 N 1.39930 * 125.75450 * 300.18039 * 6 3 2 8 8 C 1.30448 * 108.89741 * 180.27138 * 7 6 3 9 9 C 1.41297 * 108.02112 * 359.74521 * 8 7 6 10 10 C 1.47421 * 126.41390 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00244 * 185.39026 * 10 9 8 12 12 N 1.34781 * 119.99937 * 5.39800 * 10 9 8 13 13 C 1.46500 * 119.99785 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47281 * 179.97438 * 13 12 10 15 15 O 1.21294 * 119.99802 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00455 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99901 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00480 * 359.97438 * 17 16 14 19 19 C 1.38959 * 119.99674 * 179.97438 * 17 16 14 20 20 N 1.31405 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47151 * 60.00073 * 21 19 17 23 23 H 1.48497 * 109.46936 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47085 * 300.00148 * 21 19 17 25 25 C 1.34264 * 125.75115 * 119.99657 * 6 3 2 26 26 C 1.50697 * 126.29406 * 0.02562 * 25 6 3 27 27 C 1.52998 * 117.49757 * 243.56887 * 26 25 6 28 28 C 1.52999 * 117.49413 * 312.19210 * 26 25 6 29 29 H 1.08997 * 109.46967 * 299.99652 * 1 2 3 30 30 H 1.08997 * 109.47216 * 59.99835 * 1 2 3 31 31 H 1.09001 * 109.46610 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47426 * 240.00104 * 2 1 3 33 33 H 1.09005 * 109.47478 * 120.00048 * 2 1 3 34 34 H 1.08996 * 109.47277 * 300.00275 * 5 3 2 35 35 H 1.09007 * 109.46599 * 60.00742 * 5 3 2 36 36 H 1.08997 * 109.46647 * 180.02562 * 5 3 2 37 37 H 1.08004 * 125.99342 * 179.72446 * 8 7 6 38 38 H 0.96999 * 119.99931 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47101 * 299.99431 * 13 12 10 40 40 H 1.08998 * 109.47258 * 59.99639 * 13 12 10 41 41 H 0.97000 * 119.99703 * 359.97438 * 16 14 13 42 42 H 0.97007 * 120.00198 * 180.02562 * 20 19 17 43 43 H 1.08998 * 115.56446 * 97.87597 * 26 25 6 44 44 H 1.09000 * 117.49641 * 0.02562 * 27 26 25 45 45 H 1.09000 * 117.49746 * 214.97890 * 27 26 25 46 46 H 1.09000 * 117.50142 * 145.02721 * 28 26 25 47 47 H 1.09002 * 117.52356 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.3949 0.8462 0.7738 8 6 5.6127 1.0523 0.3541 9 6 5.5417 1.7960 -0.8452 10 6 6.6819 2.2511 -1.6616 11 8 6.4922 2.9699 -2.6239 12 7 7.9345 1.8702 -1.3414 13 6 9.0675 2.3229 -2.1523 14 6 10.3464 1.7616 -1.5863 15 8 10.3146 1.0535 -0.6020 16 7 11.5256 2.0472 -2.1730 17 6 12.6891 1.5369 -1.6577 18 1 12.6608 0.9065 -0.7814 19 6 13.9048 1.8310 -2.2631 20 7 13.9392 2.5977 -3.3297 21 14 15.4902 1.1364 -1.5605 22 1 15.4307 -0.3473 -1.5772 23 1 16.6385 1.5945 -2.3830 24 1 15.6614 1.6092 -0.1633 25 6 4.2049 2.0173 -1.1091 26 6 3.6408 2.7696 -2.2866 27 6 3.8843 2.1864 -3.6800 28 6 2.4894 2.1182 -3.0552 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 0.5489 2.1253 1.3969 35 1 2.0699 1.5875 2.1492 36 1 1.9981 3.1544 1.3071 37 1 6.5168 0.7141 0.8385 38 1 8.0858 1.2970 -0.5736 39 1 8.9412 1.9769 -3.1782 40 1 9.1118 3.4119 -2.1389 41 1 11.5511 2.6138 -2.9600 42 1 14.7879 2.8027 -3.7525 43 1 3.6309 3.8553 -2.1902 44 1 4.4522 1.2583 -3.7448 45 1 4.0347 2.8884 -4.5002 46 1 1.7220 2.7752 -3.4645 47 1 2.1399 1.1452 -2.7096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344170764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:46 Heat of formation + Delta-G solvation = 16.280090 kcal Electronic energy + Delta-G solvation = -28433.528639 eV Core-core repulsion = 24425.499525 eV Total energy + Delta-G solvation = -4008.029114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.70389 -39.11225 -37.93305 -37.26057 -36.60799 -34.34327 -33.55189 -31.89514 -31.33784 -30.33160 -29.39282 -27.53251 -25.33382 -24.49798 -23.51901 -23.00870 -22.07561 -21.65399 -19.70219 -19.52721 -19.25708 -18.07260 -17.56555 -16.44925 -16.07286 -15.61772 -15.42465 -15.27330 -15.06089 -14.83054 -14.73670 -14.40795 -14.04156 -13.90089 -13.70662 -13.48906 -13.29302 -12.98659 -12.67894 -12.26803 -12.23087 -12.17748 -12.08059 -11.84635 -11.73127 -11.60061 -11.54075 -11.30373 -11.13659 -11.07471 -10.70263 -10.48191 -10.39442 -10.28015 -9.59030 -9.55753 -9.46912 -8.80083 -8.58079 -8.47267 -8.06254 -6.47992 -3.89772 1.47456 2.12222 2.21752 3.16463 3.23691 3.27204 3.47441 3.60077 3.68435 3.80861 4.05090 4.14024 4.16297 4.36236 4.52656 4.58848 4.72046 4.72536 4.88753 4.93904 4.94710 4.98054 5.08019 5.20699 5.23196 5.23838 5.31497 5.34328 5.46259 5.52295 5.54002 5.70891 5.76843 5.79756 5.83111 5.87358 5.97948 6.02830 6.04486 6.13589 6.40644 6.74868 6.82520 7.49164 7.50354 7.95852 8.00651 8.49138 8.65132 9.08241 9.43522 9.91746 10.68881 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.002162 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.435279 B =12945.022693 C =13713.274721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.152 3.848 4 H 0.108 0.892 5 C -0.162 4.162 6 N -0.352 5.352 7 N -0.294 5.294 8 C 0.082 3.918 9 C -0.281 4.281 10 C 0.591 3.409 11 O -0.550 6.550 12 N -0.706 5.706 13 C 0.113 3.887 14 C 0.429 3.571 15 O -0.597 6.597 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.180 3.820 26 C -0.095 4.095 27 C -0.124 4.124 28 C -0.191 4.191 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.192 0.808 38 H 0.408 0.592 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.249 -0.575 2.592 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.051 3.949 4 H 0.126 0.874 5 C -0.220 4.220 6 N -0.131 5.131 7 N -0.112 5.112 8 C -0.105 4.105 9 C -0.296 4.296 10 C 0.378 3.622 11 O -0.429 6.429 12 N -0.359 5.359 13 C -0.015 4.015 14 C 0.215 3.785 15 O -0.484 6.484 16 N -0.185 5.185 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.760 3.240 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.048 3.952 26 C -0.115 4.115 27 C -0.162 4.162 28 C -0.228 4.228 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.209 0.791 38 H 0.246 0.754 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.114 0.886 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.063 -1.012 3.393 28.286 hybrid contribution 1.656 0.139 -0.342 1.696 sum -26.407 -0.873 3.051 26.597 Atomic orbital electron populations 1.21802 0.94292 1.02548 1.02262 1.21864 0.96534 0.94842 1.03791 1.21571 0.74108 0.98416 1.00789 0.87411 1.22173 1.02145 1.01035 0.96644 1.48632 1.06522 1.40720 1.17220 1.77130 0.99168 1.20104 1.14842 1.24144 0.96203 0.96037 0.94162 1.19982 0.92590 1.15105 1.01926 1.17130 0.81709 0.79851 0.83541 1.90736 1.85230 1.37998 1.28910 1.45465 1.04969 1.52582 1.32916 1.20898 0.85375 0.99959 0.95234 1.19790 0.84908 0.86674 0.87169 1.90491 1.86504 1.42781 1.28583 1.41789 1.04898 1.44294 1.27528 1.19678 0.82888 1.28503 1.12320 0.87747 1.25319 0.99744 0.96754 0.95951 1.69607 1.27893 1.36200 1.19870 0.85875 0.80073 0.79262 0.78768 1.19808 1.20900 1.19799 1.20486 0.90596 0.93964 0.90193 1.20410 1.02969 0.98494 0.89640 1.22791 0.96316 1.02916 0.94177 1.23227 0.92686 1.02270 1.04611 0.91993 0.92358 0.91922 0.91432 0.90288 0.90382 0.90919 0.91984 0.79117 0.75389 0.89921 0.89921 0.77044 0.91590 0.85327 0.88613 0.87654 0.87903 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.67 37.16 0.36 -0.35 16 2 C -0.13 -0.93 5.65 -26.73 -0.15 -1.08 16 3 C 0.15 1.20 2.62 -67.93 -0.18 1.03 16 4 H 0.11 0.71 5.64 -51.93 -0.29 0.41 16 5 C -0.16 -1.14 9.20 37.16 0.34 -0.80 16 6 N -0.35 -3.99 3.25 -50.16 -0.16 -4.16 16 7 N -0.29 -3.85 12.33 30.86 0.38 -3.47 16 8 C 0.08 1.10 11.50 -16.98 -0.20 0.90 16 9 C -0.28 -4.10 6.12 -105.07 -0.64 -4.74 16 10 C 0.59 9.89 7.81 -12.52 -0.10 9.80 16 11 O -0.55 -10.10 14.78 5.27 0.08 -10.02 16 12 N -0.71 -12.24 5.52 -62.56 -0.35 -12.58 16 13 C 0.11 2.12 6.15 -5.19 -0.03 2.09 16 14 C 0.43 9.92 7.85 -10.99 -0.09 9.84 16 15 O -0.60 -15.36 15.24 5.54 0.08 -15.28 16 16 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 21 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C 0.18 2.27 6.45 -81.60 -0.53 1.75 16 26 C -0.10 -1.01 4.82 -91.77 -0.44 -1.45 16 27 C -0.12 -1.30 9.07 -26.73 -0.24 -1.54 16 28 C -0.19 -1.48 8.52 -26.73 -0.23 -1.70 16 29 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.36 6.56 -51.93 -0.34 0.02 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.19 2.20 7.53 -52.48 -0.40 1.81 16 38 H 0.41 6.96 6.42 -40.82 -0.26 6.70 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.50 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.69 7.46 -51.93 -0.39 0.30 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -32.13 392.21 -7.70 -39.83 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.93 Total: 15.37 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.36 Total: 5.83 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.54 Total: -57.31 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.16 Total: -25.30 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.13 -7.70 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344170764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.112 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds