Wall clock time and date at job start Tue Mar 31 2020 17:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.52999 * 109.47299 * 120.00442 * 2 1 3 5 5 C 1.50697 * 109.47377 * 174.99879 * 4 2 1 6 6 N 1.31800 * 119.03491 * 89.99488 * 5 4 2 7 7 C 1.32252 * 120.90141 * 180.02562 * 6 5 4 8 8 C 1.39290 * 119.01078 * 359.97438 * 7 6 5 9 9 N 1.39780 * 120.87832 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00045 * 212.41785 * 9 8 7 11 11 O 1.21380 * 119.99959 * 5.26367 * 10 9 8 12 12 C 1.49349 * 119.99939 * 185.26791 * 10 9 8 13 13 O 1.21358 * 120.00033 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99939 * 179.97438 * 12 10 9 15 15 C 1.46500 * 119.99964 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47110 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47135 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47124 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00062 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00122 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00025 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47402 * 89.99710 * 22 20 18 24 24 H 1.48510 * 109.47103 * 210.00172 * 22 20 18 25 25 H 1.48504 * 109.46901 * 329.99838 * 22 20 18 26 26 C 1.39286 * 118.24445 * 359.97438 * 8 7 6 27 27 N 1.31806 * 119.03147 * 269.97683 * 5 4 2 28 28 H 1.08999 * 109.46746 * 299.99982 * 1 2 3 29 29 H 1.08994 * 109.47384 * 59.99709 * 1 2 3 30 30 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46806 * 240.00053 * 2 1 3 32 32 H 1.08997 * 109.46918 * 299.99974 * 3 2 1 33 33 H 1.08999 * 109.47171 * 60.00279 * 3 2 1 34 34 H 1.09002 * 109.47241 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47544 * 54.99243 * 4 2 1 36 36 H 1.09003 * 109.46844 * 294.99208 * 4 2 1 37 37 H 1.08011 * 120.49710 * 179.97438 * 7 6 5 38 38 H 0.97000 * 119.99843 * 32.41953 * 9 8 7 39 39 H 0.97001 * 119.99800 * 0.02562 * 14 12 10 40 40 H 1.08998 * 109.47459 * 300.00254 * 15 14 12 41 41 H 1.09005 * 109.46932 * 60.00240 * 15 14 12 42 42 H 1.09006 * 109.47111 * 300.00161 * 16 15 14 43 43 H 1.08997 * 109.47153 * 60.00088 * 16 15 14 44 44 H 1.08993 * 109.46890 * 300.00002 * 17 16 15 45 45 H 1.09005 * 109.47098 * 60.00196 * 17 16 15 46 46 H 0.97007 * 120.00101 * 180.02562 * 21 20 18 47 47 H 1.08009 * 120.49916 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.2741 0.1355 1.7082 7 6 5.5950 0.0787 1.6751 8 6 6.2092 -1.0214 1.0811 9 7 7.6022 -1.1218 1.0252 10 6 8.1921 -1.7376 -0.0186 11 8 7.5218 -2.1202 -0.9553 12 6 9.6705 -1.9492 -0.0224 13 8 10.3408 -1.5663 0.9140 14 7 10.2603 -2.5654 -1.0659 15 6 11.7106 -2.7725 -1.0699 16 6 12.1199 -3.4890 -2.3583 17 6 13.6345 -3.7059 -2.3623 18 6 14.0376 -4.4111 -3.6316 19 1 13.2885 -4.6783 -4.3622 20 6 15.3627 -4.7161 -3.8597 21 7 15.7145 -5.3320 -4.9672 22 14 16.6582 -4.2559 -2.5950 23 1 16.8252 -5.3712 -1.6290 24 1 17.9497 -3.9974 -3.2809 25 1 16.2294 -3.0330 -1.8698 26 6 5.3985 -2.0193 0.5454 27 7 4.0846 -1.8866 0.6185 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6053 -1.7199 1.2952 36 1 1.7518 -0.1583 2.1369 37 1 6.1887 0.8734 2.1024 38 1 8.1444 -0.7483 1.7375 39 1 9.7246 -2.8712 -1.8145 40 1 12.2155 -1.8082 -1.0139 41 1 11.9931 -3.3810 -0.2108 42 1 11.6149 -4.4535 -2.4138 43 1 11.8373 -2.8810 -3.2177 44 1 14.1396 -2.7417 -2.3065 45 1 13.9167 -4.3142 -1.5029 46 1 16.6468 -5.5469 -5.1275 47 1 5.8362 -2.8880 0.0760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351526917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:56 Heat of formation + Delta-G solvation = -41.001629 kcal Electronic energy + Delta-G solvation = -27017.032824 eV Core-core repulsion = 23006.519788 eV Total energy + Delta-G solvation = -4010.513036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97771 -40.79753 -38.96892 -37.02847 -36.15893 -35.42779 -34.17470 -33.43347 -31.58670 -31.48957 -28.27618 -27.56154 -27.47005 -25.30391 -25.11149 -23.31876 -22.33310 -20.99822 -20.61242 -20.45137 -19.16905 -18.06802 -17.69811 -17.26694 -16.79058 -16.54044 -16.27146 -15.68380 -15.44116 -15.30193 -14.95345 -14.40600 -14.29551 -14.20601 -13.98357 -13.94895 -13.75302 -12.94386 -12.78032 -12.64150 -12.34662 -12.20035 -12.17069 -12.05324 -11.98633 -11.77825 -11.36323 -11.20578 -11.19781 -11.15747 -11.05079 -10.97807 -10.32058 -10.09768 -9.89979 -9.76730 -9.61082 -9.29567 -9.25949 -8.95962 -8.60673 -6.10890 -4.10371 0.21237 0.61975 1.13203 1.85529 2.82448 3.20065 3.26748 3.28147 3.34819 3.37323 3.51599 3.71453 3.98029 4.12770 4.38295 4.39299 4.48684 4.49935 4.57118 4.85071 5.12680 5.18588 5.22616 5.28618 5.29098 5.31233 5.35960 5.45746 5.46358 5.50348 5.60981 5.73340 5.82271 5.89665 5.94602 5.97074 6.01842 6.29500 6.31580 6.47891 6.50672 6.65796 7.01604 7.13382 7.26621 7.30199 7.65581 7.69093 7.72343 8.44749 8.92837 9.50668 11.02250 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.001600 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.802065 B =17496.429599 C =18045.117549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.046 4.046 5 C 0.304 3.696 6 N -0.493 5.493 7 C 0.133 3.867 8 C 0.036 3.964 9 N -0.638 5.638 10 C 0.511 3.489 11 O -0.496 6.496 12 C 0.506 3.494 13 O -0.520 6.520 14 N -0.686 5.686 15 C 0.111 3.889 16 C -0.116 4.116 17 C -0.010 4.010 18 C -0.525 4.525 19 H 0.073 0.927 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.154 3.846 27 N -0.494 5.494 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.174 0.826 38 H 0.428 0.572 39 H 0.414 0.586 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.015 0.985 46 H 0.264 0.736 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.846 12.418 15.493 34.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.085 4.085 5 C 0.037 3.963 6 N -0.206 5.206 7 C -0.036 4.036 8 C -0.063 4.063 9 N -0.286 5.286 10 C 0.293 3.707 11 O -0.368 6.368 12 C 0.285 3.715 13 O -0.397 6.397 14 N -0.338 5.338 15 C -0.011 4.011 16 C -0.154 4.154 17 C -0.048 4.048 18 C -0.563 4.563 19 H 0.091 0.909 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.015 4.015 27 N -0.208 5.208 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.191 0.809 38 H 0.267 0.733 39 H 0.250 0.750 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -28.591 12.370 15.401 34.752 hybrid contribution 1.982 0.121 0.466 2.040 sum -26.609 12.491 15.867 33.404 Atomic orbital electron populations 1.21813 0.94272 1.02044 1.02100 1.21064 0.96117 0.96544 0.97231 1.21851 1.01319 0.95418 1.01700 1.20521 0.85359 1.02712 0.99941 1.23214 0.97973 0.85527 0.89621 1.68277 1.05566 1.28579 1.18151 1.23162 0.90929 0.94320 0.95204 1.19566 0.84620 0.97758 1.04388 1.42978 1.04274 1.56767 1.24588 1.20653 0.89733 0.78266 0.82029 1.90810 1.65267 1.47139 1.33598 1.19606 0.87104 0.80628 0.84192 1.90795 1.64575 1.49683 1.34639 1.46032 1.10536 1.56428 1.20781 1.21919 0.76615 1.01559 1.01030 1.21759 1.00063 0.99581 0.93985 1.19501 0.90329 0.97047 0.97919 1.21077 0.94024 1.37744 1.03419 0.90931 1.25024 0.98609 0.94472 0.95299 1.69911 1.17639 1.41172 1.25259 0.86777 0.81120 0.79576 0.81807 1.20233 1.21321 1.18940 1.23448 0.88190 0.96754 0.93087 1.68334 1.12121 1.24358 1.15942 0.92415 0.92342 0.92371 0.90843 0.92880 0.92238 0.92716 0.89040 0.89073 0.80916 0.73295 0.74969 0.90851 0.90846 0.91722 0.91712 0.96220 0.96646 0.92636 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.09 -0.60 2.91 -90.62 -0.26 -0.86 16 3 C -0.15 -1.01 8.91 37.16 0.33 -0.68 16 4 C -0.05 -0.32 5.12 -27.88 -0.14 -0.46 16 5 C 0.30 2.86 6.25 -157.18 -0.98 1.88 16 6 N -0.49 -4.45 9.25 -10.56 -0.10 -4.55 16 7 C 0.13 1.02 11.26 -16.98 -0.19 0.83 16 8 C 0.04 0.32 6.33 -83.45 -0.53 -0.21 16 9 N -0.64 -5.27 5.35 -10.11 -0.05 -5.33 16 10 C 0.51 5.46 7.66 -11.63 -0.09 5.37 16 11 O -0.50 -6.14 14.17 5.47 0.08 -6.06 16 12 C 0.51 6.20 7.89 -11.63 -0.09 6.11 16 13 O -0.52 -7.35 16.48 5.49 0.09 -7.26 16 14 N -0.69 -8.61 5.55 -60.76 -0.34 -8.95 16 15 C 0.11 1.62 5.67 -4.04 -0.02 1.59 16 16 C -0.12 -2.02 5.27 -26.73 -0.14 -2.16 16 17 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 18 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 22 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 26 C 0.15 1.59 9.94 -16.98 -0.17 1.42 16 27 N -0.49 -5.28 10.32 -10.56 -0.11 -5.39 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.47 6.66 -51.93 -0.35 0.13 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.43 2.70 8.30 -40.82 -0.34 2.37 16 39 H 0.41 4.71 7.94 -40.82 -0.32 4.38 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 45 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 47 H 0.18 1.86 6.47 -52.48 -0.34 1.52 16 LS Contribution 395.08 15.07 5.95 5.95 Total: -1.00 -32.52 395.08 -8.06 -40.58 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.20 Total: 1.82 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.49 Total: -0.79 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.18 Total: -50.71 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.17 Total: -13.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.52 -8.06 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351526917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.425 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds